EsuBft1811_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1811_2a-0001
Unique Name	EsuBft1811_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_385	contig	Scaffold_385:45986..47590 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1811_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	136
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1811_2a	EsuBft1811_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_385 45986..47590 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1811_2a-0001-exon	EsuBft1811_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 45986..46904 -
EsuBft1811_2a-0001-exon	agat-exon-22957	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 47143..47590 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1811_2a-0001-exon	agat-three_prime_utr-6489	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_385 45986..46641 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1811_2a-0001-cds	EsuBft1811_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_385 46642..46904 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1811_2a-0001	EsuBft1811_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_385 46642..47590 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_385:45986..47590-
coding sequence from alignment at Scaffold_385:45986..47590-

spliced messenger RNA

>EsuBft1811_2a-0001 ID=EsuBft1811_2a-0001|Name=EsuBft1811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1367bp|location=Sequence derived from alignment at Scaffold_385:45986..47590- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTACCAGGTGGCCAAAACGGTAGCAGAAAAAATGCGTGAAGACAA
GTACAAAGCTCACGACAATAAGACGGATCACCTCAAAGCGTACACAGCTA
CCAGGCAGACGATGGACGATACCTGGCAAGGTAAAGAGGCCAGATGTGTT
GAAACAGAGCAGGCGGTGAGGGACCAAGAGAGAGTAGTAAGAGGCCTCAG
GAAGATAAAAGAGGATGCACTTGAGATGAAAAACAAGCTCGGGGCACAAT
CGGGGGAGTCCCCACCTCTCAAGCCACTGGCGCCATCCTCATTAAAACAG
AGGGATGAAGCAGCCGACCAAAGGAAGGTTGAGAAAAAGCAGACTCTGAA
AAAGAAAGAGAGGAAGGAGTACCAAATTCCGAAGAAACCGAGCGTGAAGG
AGGCTGAACTGATGAAAAGAGTGGCCGAGATCGTCGCGAGCTCGCCTGGG
GTGGCAGAGGGGGTGGAAGGGGAGGAGGCGGAAGAGGAGGAAGGGGAAGG
GGAAGGTTCTCTCCGAGGGGCAAAGGAAGGGGGCAAGGACACTTTCAGAA
AGGAGGATACAGGGAAAGGAATGAAGGATGGATGGGACAAGGAGGAATGG
ATGGTGGAATGGGAGGTGGATTGGGAGGTGGATTTGGTGGAGGTGGGTCG
GGGGAGTACCCGGTCCAGGGATACCAAGGTGGATACCAGGGAGGTCCGCC
CCAAGGAATGATGTACCCTCAAGGACCATTCCACACACCCCAAGGACAGC
CGCCGCCGCACTGGCAAAATGGCAGGTATGTCGACAGCTATGGCTATGAA
TATGGCATTCCGATGTATGCGGCAAAACCAGCAAACCATAGGTACATGGA
GGCGAGAGAAATAAACTCTGGTAGGGAACAACCTCCTATGGTGGAAGCAA
CAAAACTGCCTCCTGTGGTCACTTTCACAAGGGTGGAGTCTCCGAGGGCA
GTAGACGCCCCAGTGACAGCAGCGGTCACCCCAGCGGTGATAGACGCGCC
TCAAACTGTGCAGCAGAGTGTGACAGAACCATCCTCTGTACCCAACAGCG
CAGTGGAGCTAGAGAATTCAACGGAGGCAAAAGAAGAAAGTTCTGATGAC
GAAAGACTATCAAAGGAACAAGTGACGGCAATCAGACAAAAATATGCCAC
GTATTCCACAGCTAATCTGATGAGGTTGCCGCTTCTAGCTGGCCAGCGCA
TGAGTGTTGCTGAAACTGTTTCCTTGTCATCCACTCTGGTTAAAAACGTG
GAAGAATTGAGGTTGGGGGCAGGAGATAATTCGAAATCGTCAGATTGGGT
GCGAGGATGGGACATCGCACTTGAAAAACATGTATTGAATTCCGTGTCTT
CGCGCCTTCCTAACGCG

protein sequence of EsuBft1811_2a-0001

>EsuBft1811_2 ID=EsuBft1811_2|Name=EsuBft1811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=236bp
MVYQVAKTVAEKMREDKYKAHDNKTDHLKAYTATRQTMDDTWQGKEARCV
ETEQAVRDQERVVRGLRKIKEDALEMKNKLGAQSGESPPLKPLAPSSLKQ
RDEAADQRKVEKKQTLKKKERKEYQIPKKPSVKEAELMKRVAEIVASSPG
VAEGVEGEEAEEEEGEGEGSLRGAKEGGKDTFRKEDTGKGMKDGWDKEEW
MVEWEVDWEVDLVEVGRGSTRSRDTKVDTREVRPKE

mRNA from alignment at Scaffold_385:45986..47590-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1811_2a-0001 ID=EsuBft1811_2a-0001|Name=EsuBft1811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1605bp|location=Sequence derived from alignment at Scaffold_385:45986..47590- (Ectocarpus subulatus male Bft15b)
ATGGTGTACCAGGTGGCCAAAACGGTAGCAGAAAAAATGCGTGAAGACAA
GTACAAAGCTCACGACAATAAGACGGATCACCTCAAAGCGTACACAGCTA
CCAGGCAGACGATGGACGATACCTGGCAAGGTAAAGAGGCCAGATGTGTT
GAAACAGAGCAGGCGGTGAGGGACCAAGAGAGAGTAGTAAGAGGCCTCAG
GAAGATAAAAGAGGATGCACTTGAGATGAAAAACAAGCTCGGGGCACAAT
CGGGGGAGTCCCCACCTCTCAAGCCACTGGCGCCATCCTCATTAAAACAG
AGGGATGAAGCAGCCGACCAAAGGAAGGTTGAGAAAAAGCAGACTCTGAA
AAAGAAAGAGAGGAAGGAGTACCAAATTCCGAAGAAACCGAGCGTGAAGG
AGGCTGAACTGATGAAAAGAGTGGCCGAGATCGTCGCGAGCTCGCCTGGT
TTAGACACGCGGTCGGTAACTGCCCAAGTCATGGCAGACATGGGAATCGA
ACAGGAAGACTCTGAGGAAAATTCTGTCGAAGTAAAGGAAGAAGAGGTGG
AGCAGAGACCCACAAGGAGAATTATTGGGGGGTCGGGCACTCTCGAAGTT
AATTCAGAAGATACTCGGACGATCTTTGGTGCTAGTTCCCCTGGCTCGGT
GTCATCTAGCCAAAGCTTTAGTAGCAGCAGGAGCAGGGGTGGCAGAGGGG
GTGGAAGGGGAGGAGGCGGAAGAGGAGGAAGGGGAAGGGGAAGGTTCTCT
CCGAGGGGCAAAGGAAGGGGGCAAGGACACTTTCAGAAAGGAGGATACAG
GGAAAGGAATGAAGGATGGATGGGACAAGGAGGAATGGATGGTGGAATGG
GAGGTGGATTGGGAGGTGGATTTGGTGGAGGTGGGTCGGGGGAGTACCCG
GTCCAGGGATACCAAGGTGGATACCAGGGAGGTCCGCCCCAAGGAATGAT
GTACCCTCAAGGACCATTCCACACACCCCAAGGACAGCCGCCGCCGCACT
GGCAAAATGGCAGGTATGTCGACAGCTATGGCTATGAATATGGCATTCCG
ATGTATGCGGCAAAACCAGCAAACCATAGGTACATGGAGGCGAGAGAAAT
AAACTCTGGTAGGGAACAACCTCCTATGGTGGAAGCAACAAAACTGCCTC
CTGTGGTCACTTTCACAAGGGTGGAGTCTCCGAGGGCAGTAGACGCCCCA
GTGACAGCAGCGGTCACCCCAGCGGTGATAGACGCGCCTCAAACTGTGCA
GCAGAGTGTGACAGAACCATCCTCTGTACCCAACAGCGCAGTGGAGCTAG
AGAATTCAACGGAGGCAAAAGAAGAAAGTTCTGATGACGAAAGACTATCA
AAGGAACAAGTGACGGCAATCAGACAAAAATATGCCACGTATTCCACAGC
TAATCTGATGAGGTTGCCGCTTCTAGCTGGCCAGCGCATGAGTGTTGCTG
AAACTGTTTCCTTGTCATCCACTCTGGTTAAAAACGTGGAAGAATTGAGG
TTGGGGGCAGGAGATAATTCGAAATCGTCAGATTGGGTGCGAGGATGGGA
CATCGCACTTGAAAAACATGTATTGAATTCCGTGTCTTCGCGCCTTCCTA
ACGCG

Coding sequence (CDS) from alignment at Scaffold_385:45986..47590-

>EsuBft1811_2a-0001 ID=EsuBft1811_2a-0001|Name=EsuBft1811_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=711bp|location=Sequence derived from alignment at Scaffold_385:45986..47590- (Ectocarpus subulatus male Bft15b)
ATGGTGTACCAGGTGGCCAAAACGGTAGCAGAAAAAATGCGTGAAGACAA
GTACAAAGCTCACGACAATAAGACGGATCACCTCAAAGCGTACACAGCTA
CCAGGCAGACGATGGACGATACCTGGCAAGGTAAAGAGGCCAGATGTGTT
GAAACAGAGCAGGCGGTGAGGGACCAAGAGAGAGTAGTAAGAGGCCTCAG
GAAGATAAAAGAGGATGCACTTGAGATGAAAAACAAGCTCGGGGCACAAT
CGGGGGAGTCCCCACCTCTCAAGCCACTGGCGCCATCCTCATTAAAACAG
AGGGATGAAGCAGCCGACCAAAGGAAGGTTGAGAAAAAGCAGACTCTGAA
AAAGAAAGAGAGGAAGGAGTACCAAATTCCGAAGAAACCGAGCGTGAAGG
AGGCTGAACTGATGAAAAGAGTGGCCGAGATCGTCGCGAGCTCGCCTGGG
GTGGCAGAGGGGGTGGAAGGGGAGGAGGCGGAAGAGGAGGAAGGGGAAGG
GGAAGGTTCTCTCCGAGGGGCAAAGGAAGGGGGCAAGGACACTTTCAGAA
AGGAGGATACAGGGAAAGGAATGAAGGATGGATGGGACAAGGAGGAATGG
ATGGTGGAATGGGAGGTGGATTGGGAGGTGGATTTGGTGGAGGTGGGTCG
GGGGAGTACCCGGTCCAGGGATACCAAGGTGGATACCAGGGAGGTCCGCC
CCAAGGAATGA