EsuBft1809_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1809_3a-0001
Unique NameEsuBft1809_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:26121..26470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1809_3
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length35
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_3aEsuBft1809_3aEctocarpus subulatus male Bft15bgeneScaffold_350 26121..26470 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_3a-0001-exonEsuBft1809_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 26121..26470 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_3a-0001-exonagat-five_prime_utr-4241Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 26121..26254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_3a-0001-cdsEsuBft1809_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 26255..26470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_3a-0001EsuBft1809_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 26255..26470 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1809_3a-0001 ID=EsuBft1809_3a-0001|Name=EsuBft1809_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=350bp|location=Sequence derived from alignment at Scaffold_350:26121..26470+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTCTACTGGTGACGCCAGCGCCGGCCGTTGTTCTCTCTCTCTACCGCTC
TCTCTCTCTGTGTTTCTCTCTCGCTCTGTCTCTGTCTGTCTCTGTCTTAG
TCTCTGACAACTGTAATTGCGTGCCCTTTCACCCATGAGTTCACTTCGCA
GTGAGAGTACTGACATGGCACGCTCGCTCACCCACGGCCACGCCACACCA
TGCAGACAAACAGAACGTATATTTGCAGCATCTTTCACTACGTTATGGGT
CCACTTCGCAGGGAGTGTGCTGCATGACCTCCTCTTTGCTACTCATATGT
GGGACACCACGCGATACACGTATAGATTATTTTCAGTGGAAAACAGATGA
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protein sequence of EsuBft1809_3a-0001

>EsuBft1809_3 ID=EsuBft1809_3|Name=EsuBft1809_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=71bp
MSSLRSESTDMARSLTHGHATPCRQTERIFAASFTTLWVHFAGSVLHDLL
FATHMWDTTRYTYRLFSVENR
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mRNA from alignment at Scaffold_350:26121..26470+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1809_3a-0001 ID=EsuBft1809_3a-0001|Name=EsuBft1809_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=350bp|location=Sequence derived from alignment at Scaffold_350:26121..26470+ (Ectocarpus subulatus male Bft15b)
CCTCTACTGGTGACGCCAGCGCCGGCCGTTGTTCTCTCTCTCTACCGCTC
TCTCTCTCTGTGTTTCTCTCTCGCTCTGTCTCTGTCTGTCTCTGTCTTAG
TCTCTGACAACTGTAATTGCGTGCCCTTTCACCCATGAGTTCACTTCGCA
GTGAGAGTACTGACATGGCACGCTCGCTCACCCACGGCCACGCCACACCA
TGCAGACAAACAGAACGTATATTTGCAGCATCTTTCACTACGTTATGGGT
CCACTTCGCAGGGAGTGTGCTGCATGACCTCCTCTTTGCTACTCATATGT
GGGACACCACGCGATACACGTATAGATTATTTTCAGTGGAAAACAGATGA
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Coding sequence (CDS) from alignment at Scaffold_350:26121..26470+

>EsuBft1809_3a-0001 ID=EsuBft1809_3a-0001|Name=EsuBft1809_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=216bp|location=Sequence derived from alignment at Scaffold_350:26121..26470+ (Ectocarpus subulatus male Bft15b)
ATGAGTTCACTTCGCAGTGAGAGTACTGACATGGCACGCTCGCTCACCCA
CGGCCACGCCACACCATGCAGACAAACAGAACGTATATTTGCAGCATCTT
TCACTACGTTATGGGTCCACTTCGCAGGGAGTGTGCTGCATGACCTCCTC
TTTGCTACTCATATGTGGGACACCACGCGATACACGTATAGATTATTTTC
AGTGGAAAACAGATGA
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