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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 13735.ENSPSIP00000000226 |
| ProteomeId | EsuBft1809_2 |
| Protein domains | IPR012816 |
| Protein domains | SSF143990 |
| Protein domains | G3DSA |
| Protein domains | IPR000477 |
| Protein domains | SSF56672 |
| Protein domains | PTHR10178 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 996 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.79e-37 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48NVP@7711|Chordata,49IM1@7742|Vertebrata,4CIIU@8459|Testudines |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | K02A2.6-like |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1809_2a-0001 ID=EsuBft1809_2a-0001|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=996bp|location=Sequence derived from alignment at Scaffold_350:37124..39673- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTCGTATGACCAAATAATGGCCACAACAGATCCCAAGACACACAA
GTTTTTGGGTCGTAACGTGCGCCCTTTCAACTATGCTTTAAGGGAGCGTC
GTCGCGAAGAGATTGTGCTTATGGGGTCGTATGCCAAATTTGCTCAAAAC
CATGACATGAACCAACATCTACTGGAAACGGGTACCCGCCTCCTTGCGGA
AGTCAGCCCCTTCGATCGTGGTTGTAGTATCGGCATGTCTGCATACTTTC
CAGAGGCTAGCGATTCATCCAAGTGGACGGTTAGCGGGCTCACCCAGCAT
TCCGCTTCCCCGTGGGTTTCCCCTTTGGTTGTCATCCCAAAGAAGAACGG
ATCGGTTCGCATCACCGTCAACTACAAGCGTCTCAACGCCCTGGTGGATT
TGGATGGACAGCCTCTCCCTCGTGTGGACGGTATCCTGGATTCTCTGTAC
ACCAGGAAAGTGTTCTCCATCTTCGACCTCAGCTCGGCTTTCCACCAGAT
CGATTGTGACGAAGACACCTTCCCGCTCACCGCCTTTGGCGCTCCCACGC
AGCTGTTCGAATGGCTTCGTATGGGAGCCAACGCACGTCCGTCCTGGTTC
GTCAAGTTCATCAATCGAGTGGTGCACGGTCTGGAGCGCGTGCTTACGTA
TCTGGACGATGTCATCTGTTTCGATGAGGAACCTCTGGGACACGTGCTCA
ACATGATCGAATTCTTCAAACGGCTGCGACAGTACAACCTCAAACTGTCT
CCGGGGAAAGTTCGCGTCGGCGCCACACACGCCAACTTCCTCGGTCACAT
CATCTCCCCGGCCGGCGTTAGCCCTGATGGCCTCAAGGCTGGGGCGCTAA
CGGACATGCCGCCGCCGCCGAATGTCAAACAGCGTTGGAGCCTTCTCGGT
GGACTCAGTTATCAGTTACTACCGGAAATTCCTCAGGAATCTCGCCACCA
AGGTGCGACCTCTCACCGCTCTTGCCAAACAAGGTGTCCCCATTAA back to topprotein sequence of EsuBft1809_2a-0001 >EsuBft1809_2 ID=EsuBft1809_2|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=331bp
MASYDQIMATTDPKTHKFLGRNVRPFNYALRERRREEIVLMGSYAKFAQN
HDMNQHLLETGTRLLAEVSPFDRGCSIGMSAYFPEASDSSKWTVSGLTQH
SASPWVSPLVVIPKKNGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLY
TRKVFSIFDLSSAFHQIDCDEDTFPLTAFGAPTQLFEWLRMGANARPSWF
VKFINRVVHGLERVLTYLDDVICFDEEPLGHVLNMIEFFKRLRQYNLKLS
PGKVRVGATHANFLGHIISPAGVSPDGLKAGALTDMPPPPNVKQRWSLLG
GLSYQLLPEIPQESRHQGATSHRSCQTRCPH back to topmRNA from alignment at Scaffold_350:37124..39673- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1809_2a-0001 ID=EsuBft1809_2a-0001|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2550bp|location=Sequence derived from alignment at Scaffold_350:37124..39673- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGTATGACCAAATAATGGCCACAACAGATCCCAAGACACACAA
GTTTTTGGGTCGTAACGTGCGCCCTTTCAACTATGCTTTAAGGGAGCGTC
GTCGCGAAGAGATTGTGCTTATGGGGTCGTATGCCAAATTTGCTCAAAAC
CATGACATGAACCAACATCTACTGGAAACGGGTACCCGCCTCCTTGCGGA
AGTCAGCCCCTTCGATCGTGGTTGTAGTATCGGCATGTCTGCATACTTTC
CAGAGGCTAGCGATTCATCCAAGTGGACGGTTAGCGGTAAAACTTGTTGG
GAAAAGCTTTGATGGAAGTTCGACGCCTTTTGCGTGATCATCCCTTGTCT
GGCAAGATTGTCTCCGCTTCCAATCCTCCCACGCCCCCCATTTCGCAGCC
TCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTACTGCTACAGGTT
CTTCGTCTCCGGGGGACCGGGGCGAAGATCCAGCTTGTCTCCGTTTGGAC
GCTCCACGGGACCATGCTCCTGGCGTTCATATGGTGGCATCGACCTCCGC
TTGTGCAGACCAAGCTCCTCTTCTGGAACATGGGTCCGATCTGGTTGGCG
GCACGCTCCCGTTGGACTCGGACTCATACACCACCCGGGTTCTGCTGCAT
GGAGGACCTACAGCCACTTCCCAACTCACGCGAGTGGCGCTGCTGGACTC
TGGGTCTCCGGCGTCCTTCGTGTCTGACTCCCTGGTCACCGCCATGATAG
ACGCTAGAGCTTTGACCGCTGGGAGAGTTCGTGTCTCACCCTTTCGTCGT
TGGAGTGGGTTTGGTGATGGACCCCCCCTTGTGACCACCAGGTCGGTTCA
TCTCACCGTCAACTTTCTTCACGGGGATCGCGCTATCGCTTCCTTGGCGG
TCTGGGCCTGTGTTGTTCCAGATGCAGCCATGGGGCACGCCGTGCTTCTG
TGTCGTGATAGCGGGATGCGGTTCAACTCTCGCGTGTTTACCACCCTTCC
TCACCCTGGACCGGATGGCCGGGTTATGGGCGAGCTCACGCCCTCTCCGC
GTTTTTCCGCTGGCGCTTGCGTTTATGCTACACACGACGACGTTACTGCC
TCCTCCTTTCACCTTAAATATGCAGGGACTTCGAGAATTTCATCGGGGCC
GGAGGCTGCACTCGTTGAGGTGGACCTCGTCCGTTCTTCTGCATGCCCGC
GTTGATCGGCGAATGTCTGGTGTCGTTTCGACCAGAAGTAGGTGCGCTAT
CGTCCCCCGACGCTTCGTTTCCAATGGCATCCAGCGTATTCCCCCTGCAG
GTTGTGCTGAGCTGGAGCCAGGAGACGCCATAGGAGTGTCTGCCGCGCCG
CTATTACGAGTACCGGTGGAAACCATGAAGGCGACACCATCTTCGATTCC
TACCGGTCCCACGGCCTCTACATCACCACCTCGGGTCAACGTCGTCTATC
CCAAGTCTGGGACTCGCCGCTCTCCGGACCCAGCTTGAGCCCCGCCTCCC
CCGAAGCCGCATCCGCAAGAACTGATGGACTGCTCTTCCGAGGCACAGCG
CTCCAGCTTTTCGCGCTTGTGGGCTAGGCTGCCAGCTCATATTCACGACA
TCGCTTTCGATTTACACAATACGGGATGGACGCCGGAGGCTATTTGTCGA
TTGGTTGACGCTCTTGTCGAGTATTCTGACGTATTCTCCACTTCGAAAAC
CGATTTTGGTTCCTGCACCATCATGCCGTTCACCCTTTCTGTCCCGGTAT
GGACGAAGCCGGTTGCATCACGCCCGTATCGCATCAACCCGTCAATGCAG
AAGATAGTGGATGCAGTTCTGGACCAATGCCTGGCGGCAGGGCTCACCCA
GCATTCCGCTTCCCCGTGGGTTTCCCCTTTGGTTGTCATCCCAAAGAAGA
ACGGATCGGTTCGCATCACCGTCAACTACAAGCGTCTCAACGCCCTGGTG
GATTTGGATGGACAGCCTCTCCCTCGTGTGGACGGTATCCTGGATTCTCT
GTACACCAGGAAAGTGTTCTCCATCTTCGACCTCAGCTCGGCTTTCCACC
AGATCGATTGTGACGAAGACACCTTCCCGCTCACCGCCTTTGGCGCTCCC
ACGCAGCTGTTCGAATGGCTTCGTATGGGAGCCAACGCACGTCCGTCCTG
GTTCGTCAAGTTCATCAATCGAGTGGTGCACGGTCTGGAGCGCGTGCTTA
CGTATCTGGACGATGTCATCTGTTTCGATGAGGAACCTCTGGGACACGTG
CTCAACATGATCGAATTCTTCAAACGGCTGCGACAGTACAACCTCAAACT
GTCTCCGGGGAAAGTTCGCGTCGGCGCCACACACGCCAACTTCCTCGGTC
ACATCATCTCCCCGGCCGGCGTTAGCCCTGATGGCCTCAAGGCTGGGGCG
CTAACGGACATGCCGCCGCCGCCGAATGTCAAACAGCGTTGGAGCCTTCT
CGGTGGACTCAGTTATCAGTTACTACCGGAAATTCCTCAGGAATCTCGCC
ACCAAGGTGCGACCTCTCACCGCTCTTGCCAAACAAGGTGTCCCCATTAA
back to topCoding sequence (CDS) from alignment at Scaffold_350:37124..39673- >EsuBft1809_2a-0001 ID=EsuBft1809_2a-0001|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=996bp|location=Sequence derived from alignment at Scaffold_350:37124..39673- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGTATGACCAAATAATGGCCACAACAGATCCCAAGACACACAA
GTTTTTGGGTCGTAACGTGCGCCCTTTCAACTATGCTTTAAGGGAGCGTC
GTCGCGAAGAGATTGTGCTTATGGGGTCGTATGCCAAATTTGCTCAAAAC
CATGACATGAACCAACATCTACTGGAAACGGGTACCCGCCTCCTTGCGGA
AGTCAGCCCCTTCGATCGTGGTTGTAGTATCGGCATGTCTGCATACTTTC
CAGAGGCTAGCGATTCATCCAAGTGGACGGTTAGCGGGCTCACCCAGCAT
TCCGCTTCCCCGTGGGTTTCCCCTTTGGTTGTCATCCCAAAGAAGAACGG
ATCGGTTCGCATCACCGTCAACTACAAGCGTCTCAACGCCCTGGTGGATT
TGGATGGACAGCCTCTCCCTCGTGTGGACGGTATCCTGGATTCTCTGTAC
ACCAGGAAAGTGTTCTCCATCTTCGACCTCAGCTCGGCTTTCCACCAGAT
CGATTGTGACGAAGACACCTTCCCGCTCACCGCCTTTGGCGCTCCCACGC
AGCTGTTCGAATGGCTTCGTATGGGAGCCAACGCACGTCCGTCCTGGTTC
GTCAAGTTCATCAATCGAGTGGTGCACGGTCTGGAGCGCGTGCTTACGTA
TCTGGACGATGTCATCTGTTTCGATGAGGAACCTCTGGGACACGTGCTCA
ACATGATCGAATTCTTCAAACGGCTGCGACAGTACAACCTCAAACTGTCT
CCGGGGAAAGTTCGCGTCGGCGCCACACACGCCAACTTCCTCGGTCACAT
CATCTCCCCGGCCGGCGTTAGCCCTGATGGCCTCAAGGCTGGGGCGCTAA
CGGACATGCCGCCGCCGCCGAATGTCAAACAGCGTTGGAGCCTTCTCGGT
GGACTCAGTTATCAGTTACTACCGGAAATTCCTCAGGAATCTCGCCACCA
AGGTGCGACCTCTCACCGCTCTTGCCAAACAAGGTGTCCCCATTAA back to top
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