Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7668.SPU_005982-tr |
| ProteomeId | EsuBft1799_9 |
| Protein domains | SSF56672 |
| Protein domains | PTHR10178 |
| Protein domains | G3DSA |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 33208|Metazoa |
| Length | 1146 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.14e-78 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3AH2J@33154|Opisthokonta,3BX3Q@33208|Metazoa |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1799_9a-0001 ID=EsuBft1799_9a-0001|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1146bp|location=Sequence derived from alignment at Scaffold_550:100949..102618- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTTGACGATGACATCATCGAAGAGCTGCCTAGTCAGTGGGGTTCCCC
CGTTACTCTCGTCGCGCGTAAACATGGTAAACCTCGTTTTTGCGTCGATT
TCCGAATCACCGTCAACAAGCACATCATTCGCAAGACCTGGCCTCTAGCG
GACATGGAGTCCAACCTTGACTCTGTCGGCAGCGCCAACTTCATCAGCGT
TGCAAACGTCCAGTCAGCGTACTGGCAGATTCCTGTTCATCCTGACCACG
TCGAAAGGACAGCCTTTGTCACCAACTCTGGCAAGTACTGTTACAAGCGG
ATGCCGTTTGGTGTTTGCCATATTCCCGAATTGTTGATTTACATGGATGG
TTTTTGTGTGCTTTCAGCAACTTTCGAGAATCATATGAAGTCTTTGGAGA
GCATGTTCGTAGCTCTCCAAGCAGCAGGTCTGACATTGAAACCTTCGAAG
ATTTCGTTTGGCCCCAAGTCCATCGAGTATTTGGGACATATTATTTCGGC
TGAAGGTATTTCTGTCGGGAAGGATCGTATCAAAGCCGTCCAAAACCTTC
CTACTCCTCGTTGCCTGAAAGATCTTCGCTCAGTACTCGGGGTGGTTAAT
TTTGTGCGCCGGTTCATACCGGATTATGCAGAAATAACCAATCCGTTGGT
GGAGTTAACTCGCAAAGAGTACGCCACAAAATCACGTTTCGTAAAAGCTT
GGAACAAATCGCACGACGCATCGTTCGCTCATCTAAAGCGGTTATTAACT
TCAGCGCCCGTTCTACACTTCCCAGACTTCGATCGGGAATTCGTAGTTCA
TGTGGATGCATCCGAACATGGGTGTGGCGCGTTTCTTGCCCAGCCGTCCA
AGGCTGATCCAGAGTCTCTTGGCATGATTACGTATTATAGTCATAGATTC
AAACATGGACAGCGTCATTACTCTGCGTCTATGAAAGAGTGTTGCGGTGT
GGTTCTTGCAATTTCGCATTGGCGACCGTACTTATTTGGGAAACACTTTA
CGGTGATCACGGATCATCAAGCGTTGACTCATCTTTTTTATATGCAAGAC
ACCAGCAACATGCTCACTCGTTGGGCTATCGCTCTTCAAAATTATGATTT
TACCGTCAAACACGTAGCGGGAAAATTGAACGTCGGGGTCATCTAG back to topprotein sequence of EsuBft1799_9a-0001 >EsuBft1799_9 ID=EsuBft1799_9|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MLDDDIIEELPSQWGSPVTLVARKHGKPRFCVDFRITVNKHIIRKTWPLA
DMESNLDSVGSANFISVANVQSAYWQIPVHPDHVERTAFVTNSGKYCYKR
MPFGVCHIPELLIYMDGFCVLSATFENHMKSLESMFVALQAAGLTLKPSK
ISFGPKSIEYLGHIISAEGISVGKDRIKAVQNLPTPRCLKDLRSVLGVVN
FVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKRLLT
SAPVLHFPDFDREFVVHVDASEHGCGAFLAQPSKADPESLGMITYYSHRF
KHGQRHYSASMKECCGVVLAISHWRPYLFGKHFTVITDHQALTHLFYMQD
TSNMLTRWAIALQNYDFTVKHVAGKLNVGVI back to topmRNA from alignment at Scaffold_550:100949..102618- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1799_9a-0001 ID=EsuBft1799_9a-0001|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1670bp|location=Sequence derived from alignment at Scaffold_550:100949..102618- (Ectocarpus subulatus male Bft15b)
ATGCTTGACGATGACATCATCGAAGAGCTGCCTAGTCAGTGGGGTTCCCC
CGTTACTCTCGTCGCGCGTAAACATGGTAAACCTCGTTTTTGCGTCGATT
TCCGAATCACCGTCAACAAGCACATCATTCGCAAGACCTGGCCTCTAGCG
GACATGGAGTCCAACCTTGACTCTGTCGGCAGCGCCAACTTCATCAGCGT
TGCAAACGTCCAGTCAGCGTACTGGCAGATTCCTGTTCATCCTGACCACG
TCGAAAGGACAGCCTTTGTCACCAACTCTGGCAAGTACTGTTACAAGCGG
ATGCCGTTTGGTGTTTGTAATGCCCCATGGATTTTTACTGAGATGGCCCA
TAAACATTAGGCCATATTCCCGAATTGTTGATTTACATGGATGGTTTTTG
TGTGCTTTCAGCAACTTTCGAGAATCATATGAAGTCTTTGGAGAGCATGT
TCGTAGCTCTCCAAGCAGCAGGTCTGACATTGAAACCTTCGAAGATTTCG
TTTGGCCCCAAGTCCATCGAGTATTTGGGACATATTATTTCGGCTGAAGG
TATTTCTGTCGGGAAGGATCGTATCAAAGCCGTCCAAAACCTTCCTACTC
CTCGTTGCCTGAAAGATCTTCGCTCAGTACTCGGGGTGGTTAATTTTGTG
CGCCGGTTCATACCGGATTATGCAGAAATAACCAATCCGTTGGTGGAGTT
AACTCGCAAAGAGTACGCCACAAAATCACGTTTCGTAAAAGCTTGGAACA
AATCGCACGACGCATCGTTCGCTCATCTAAAGCGGTTATTAACTTCAGCG
CCCGTTCTACACTTCCCAGACTTCGATCGGGAATTCGTAGTTCATGTGGA
TGCATCCGAACATGGGTGTGGCGCGTTTCTTGCCCAGCCGTCCAAGGCTG
ATCCAGAGTCTCTTGGCATGATTACGTATTATAGTCATAGATTCAAACAT
GGACAGCGTCATTACTCTGCGTCTATGAAAGAGTGTTGCGGTGTGGTTCT
TGCAATTTCGCATTGGCGACCGTACTTATTTGGGAAACACTTTACGGTGA
TCACGGATCATCAAGCGTTGACTCATCTTTTTTATATGCAAGACACCAGC
AACATGCTCACTCGTTGGGCTATCGCTCTTCAAAATTATGATTTTACCGT
CAAACACGTAGCGGGAAAATTGAACGTCGTACCCGATACGTTATCTCGTT
TATTTGGCGAAATTGAGTCCGAAACCATATCACACAAACCGGCCCTAGCG
TCGATTTGTAGAAATGTGCCGAGTGATCGTCCGTACCATCCTCCTGGCCC
TCGTGACTCAAAATTTCTGCCGATTCGTTGAACGATGTTGATATCGTCCA
TAATGACAACGAACTGTTTGCTAGTGCTGTATCGTTATCTCCTGTACTGG
ATTCCGCTAAATTGCGGAGAGAACAGTACTAAGAGTTCGGTCCGTATATC
GACTACGTCAAGAAACCCAAACCAGCACCGTTACCGTCTAGCGAAAATAG
AGGAACCATGAGTAATTACTTCTTGAATGAGAACGTTCTATTCAGGTCGT
ATTTACCAGGGTATCTTCGTAAACGCAGTTCGCTTTGTGATCAACTTGTC
GTTCCCACCGTTTTGCGTGCGCTAGTCTTGGATTCTTGTCATGATGCTCC
TGCGTCAGGGGGTCATCTAG back to topCoding sequence (CDS) from alignment at Scaffold_550:100949..102618- >EsuBft1799_9a-0001 ID=EsuBft1799_9a-0001|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1146bp|location=Sequence derived from alignment at Scaffold_550:100949..102618- (Ectocarpus subulatus male Bft15b)
ATGCTTGACGATGACATCATCGAAGAGCTGCCTAGTCAGTGGGGTTCCCC
CGTTACTCTCGTCGCGCGTAAACATGGTAAACCTCGTTTTTGCGTCGATT
TCCGAATCACCGTCAACAAGCACATCATTCGCAAGACCTGGCCTCTAGCG
GACATGGAGTCCAACCTTGACTCTGTCGGCAGCGCCAACTTCATCAGCGT
TGCAAACGTCCAGTCAGCGTACTGGCAGATTCCTGTTCATCCTGACCACG
TCGAAAGGACAGCCTTTGTCACCAACTCTGGCAAGTACTGTTACAAGCGG
ATGCCGTTTGGTGTTTGCCATATTCCCGAATTGTTGATTTACATGGATGG
TTTTTGTGTGCTTTCAGCAACTTTCGAGAATCATATGAAGTCTTTGGAGA
GCATGTTCGTAGCTCTCCAAGCAGCAGGTCTGACATTGAAACCTTCGAAG
ATTTCGTTTGGCCCCAAGTCCATCGAGTATTTGGGACATATTATTTCGGC
TGAAGGTATTTCTGTCGGGAAGGATCGTATCAAAGCCGTCCAAAACCTTC
CTACTCCTCGTTGCCTGAAAGATCTTCGCTCAGTACTCGGGGTGGTTAAT
TTTGTGCGCCGGTTCATACCGGATTATGCAGAAATAACCAATCCGTTGGT
GGAGTTAACTCGCAAAGAGTACGCCACAAAATCACGTTTCGTAAAAGCTT
GGAACAAATCGCACGACGCATCGTTCGCTCATCTAAAGCGGTTATTAACT
TCAGCGCCCGTTCTACACTTCCCAGACTTCGATCGGGAATTCGTAGTTCA
TGTGGATGCATCCGAACATGGGTGTGGCGCGTTTCTTGCCCAGCCGTCCA
AGGCTGATCCAGAGTCTCTTGGCATGATTACGTATTATAGTCATAGATTC
AAACATGGACAGCGTCATTACTCTGCGTCTATGAAAGAGTGTTGCGGTGT
GGTTCTTGCAATTTCGCATTGGCGACCGTACTTATTTGGGAAACACTTTA
CGGTGATCACGGATCATCAAGCGTTGACTCATCTTTTTTATATGCAAGAC
ACCAGCAACATGCTCACTCGTTGGGCTATCGCTCTTCAAAATTATGATTT
TACCGTCAAACACGTAGCGGGAAAATTGAACGTCGGGGTCATCTAG back to top
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