EsuBft1799_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1799_9a-0001
Unique NameEsuBft1799_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:100949..102618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_005982-tr
ProteomeIdEsuBft1799_9
Protein domainsSSF56672
Protein domainsPTHR10178
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length1146
Hectar predicted targeting categoryother localisation
Evalue4.14e-78
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3AH2J@33154|Opisthokonta,3BX3Q@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_9aEsuBft1799_9aEctocarpus subulatus male Bft15bgeneScaffold_550 100949..102618 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_9a-0001-exonagat-exon-84935Ectocarpus subulatus male Bft15bexonScaffold_550 100949..100960 -
EsuBft1799_9a-0001-exonagat-exon-84934Ectocarpus subulatus male Bft15bexonScaffold_550 101441..102258 -
EsuBft1799_9a-0001-exonEsuBft1799_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 102303..102618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_9a-0001-cdsEsuBft1799_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 100949..100960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_9a-0001EsuBft1799_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 100949..102618 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1799_9a-0001 ID=EsuBft1799_9a-0001|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1146bp|location=Sequence derived from alignment at Scaffold_550:100949..102618- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGACGATGACATCATCGAAGAGCTGCCTAGTCAGTGGGGTTCCCC
CGTTACTCTCGTCGCGCGTAAACATGGTAAACCTCGTTTTTGCGTCGATT
TCCGAATCACCGTCAACAAGCACATCATTCGCAAGACCTGGCCTCTAGCG
GACATGGAGTCCAACCTTGACTCTGTCGGCAGCGCCAACTTCATCAGCGT
TGCAAACGTCCAGTCAGCGTACTGGCAGATTCCTGTTCATCCTGACCACG
TCGAAAGGACAGCCTTTGTCACCAACTCTGGCAAGTACTGTTACAAGCGG
ATGCCGTTTGGTGTTTGCCATATTCCCGAATTGTTGATTTACATGGATGG
TTTTTGTGTGCTTTCAGCAACTTTCGAGAATCATATGAAGTCTTTGGAGA
GCATGTTCGTAGCTCTCCAAGCAGCAGGTCTGACATTGAAACCTTCGAAG
ATTTCGTTTGGCCCCAAGTCCATCGAGTATTTGGGACATATTATTTCGGC
TGAAGGTATTTCTGTCGGGAAGGATCGTATCAAAGCCGTCCAAAACCTTC
CTACTCCTCGTTGCCTGAAAGATCTTCGCTCAGTACTCGGGGTGGTTAAT
TTTGTGCGCCGGTTCATACCGGATTATGCAGAAATAACCAATCCGTTGGT
GGAGTTAACTCGCAAAGAGTACGCCACAAAATCACGTTTCGTAAAAGCTT
GGAACAAATCGCACGACGCATCGTTCGCTCATCTAAAGCGGTTATTAACT
TCAGCGCCCGTTCTACACTTCCCAGACTTCGATCGGGAATTCGTAGTTCA
TGTGGATGCATCCGAACATGGGTGTGGCGCGTTTCTTGCCCAGCCGTCCA
AGGCTGATCCAGAGTCTCTTGGCATGATTACGTATTATAGTCATAGATTC
AAACATGGACAGCGTCATTACTCTGCGTCTATGAAAGAGTGTTGCGGTGT
GGTTCTTGCAATTTCGCATTGGCGACCGTACTTATTTGGGAAACACTTTA
CGGTGATCACGGATCATCAAGCGTTGACTCATCTTTTTTATATGCAAGAC
ACCAGCAACATGCTCACTCGTTGGGCTATCGCTCTTCAAAATTATGATTT
TACCGTCAAACACGTAGCGGGAAAATTGAACGTCGGGGTCATCTAG
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protein sequence of EsuBft1799_9a-0001

>EsuBft1799_9 ID=EsuBft1799_9|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=381bp
MLDDDIIEELPSQWGSPVTLVARKHGKPRFCVDFRITVNKHIIRKTWPLA
DMESNLDSVGSANFISVANVQSAYWQIPVHPDHVERTAFVTNSGKYCYKR
MPFGVCHIPELLIYMDGFCVLSATFENHMKSLESMFVALQAAGLTLKPSK
ISFGPKSIEYLGHIISAEGISVGKDRIKAVQNLPTPRCLKDLRSVLGVVN
FVRRFIPDYAEITNPLVELTRKEYATKSRFVKAWNKSHDASFAHLKRLLT
SAPVLHFPDFDREFVVHVDASEHGCGAFLAQPSKADPESLGMITYYSHRF
KHGQRHYSASMKECCGVVLAISHWRPYLFGKHFTVITDHQALTHLFYMQD
TSNMLTRWAIALQNYDFTVKHVAGKLNVGVI
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mRNA from alignment at Scaffold_550:100949..102618-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1799_9a-0001 ID=EsuBft1799_9a-0001|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1670bp|location=Sequence derived from alignment at Scaffold_550:100949..102618- (Ectocarpus subulatus male Bft15b)
ATGCTTGACGATGACATCATCGAAGAGCTGCCTAGTCAGTGGGGTTCCCC
CGTTACTCTCGTCGCGCGTAAACATGGTAAACCTCGTTTTTGCGTCGATT
TCCGAATCACCGTCAACAAGCACATCATTCGCAAGACCTGGCCTCTAGCG
GACATGGAGTCCAACCTTGACTCTGTCGGCAGCGCCAACTTCATCAGCGT
TGCAAACGTCCAGTCAGCGTACTGGCAGATTCCTGTTCATCCTGACCACG
TCGAAAGGACAGCCTTTGTCACCAACTCTGGCAAGTACTGTTACAAGCGG
ATGCCGTTTGGTGTTTGTAATGCCCCATGGATTTTTACTGAGATGGCCCA
TAAACATTAGGCCATATTCCCGAATTGTTGATTTACATGGATGGTTTTTG
TGTGCTTTCAGCAACTTTCGAGAATCATATGAAGTCTTTGGAGAGCATGT
TCGTAGCTCTCCAAGCAGCAGGTCTGACATTGAAACCTTCGAAGATTTCG
TTTGGCCCCAAGTCCATCGAGTATTTGGGACATATTATTTCGGCTGAAGG
TATTTCTGTCGGGAAGGATCGTATCAAAGCCGTCCAAAACCTTCCTACTC
CTCGTTGCCTGAAAGATCTTCGCTCAGTACTCGGGGTGGTTAATTTTGTG
CGCCGGTTCATACCGGATTATGCAGAAATAACCAATCCGTTGGTGGAGTT
AACTCGCAAAGAGTACGCCACAAAATCACGTTTCGTAAAAGCTTGGAACA
AATCGCACGACGCATCGTTCGCTCATCTAAAGCGGTTATTAACTTCAGCG
CCCGTTCTACACTTCCCAGACTTCGATCGGGAATTCGTAGTTCATGTGGA
TGCATCCGAACATGGGTGTGGCGCGTTTCTTGCCCAGCCGTCCAAGGCTG
ATCCAGAGTCTCTTGGCATGATTACGTATTATAGTCATAGATTCAAACAT
GGACAGCGTCATTACTCTGCGTCTATGAAAGAGTGTTGCGGTGTGGTTCT
TGCAATTTCGCATTGGCGACCGTACTTATTTGGGAAACACTTTACGGTGA
TCACGGATCATCAAGCGTTGACTCATCTTTTTTATATGCAAGACACCAGC
AACATGCTCACTCGTTGGGCTATCGCTCTTCAAAATTATGATTTTACCGT
CAAACACGTAGCGGGAAAATTGAACGTCGTACCCGATACGTTATCTCGTT
TATTTGGCGAAATTGAGTCCGAAACCATATCACACAAACCGGCCCTAGCG
TCGATTTGTAGAAATGTGCCGAGTGATCGTCCGTACCATCCTCCTGGCCC
TCGTGACTCAAAATTTCTGCCGATTCGTTGAACGATGTTGATATCGTCCA
TAATGACAACGAACTGTTTGCTAGTGCTGTATCGTTATCTCCTGTACTGG
ATTCCGCTAAATTGCGGAGAGAACAGTACTAAGAGTTCGGTCCGTATATC
GACTACGTCAAGAAACCCAAACCAGCACCGTTACCGTCTAGCGAAAATAG
AGGAACCATGAGTAATTACTTCTTGAATGAGAACGTTCTATTCAGGTCGT
ATTTACCAGGGTATCTTCGTAAACGCAGTTCGCTTTGTGATCAACTTGTC
GTTCCCACCGTTTTGCGTGCGCTAGTCTTGGATTCTTGTCATGATGCTCC
TGCGTCAGGGGGTCATCTAG
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Coding sequence (CDS) from alignment at Scaffold_550:100949..102618-

>EsuBft1799_9a-0001 ID=EsuBft1799_9a-0001|Name=EsuBft1799_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1146bp|location=Sequence derived from alignment at Scaffold_550:100949..102618- (Ectocarpus subulatus male Bft15b)
ATGCTTGACGATGACATCATCGAAGAGCTGCCTAGTCAGTGGGGTTCCCC
CGTTACTCTCGTCGCGCGTAAACATGGTAAACCTCGTTTTTGCGTCGATT
TCCGAATCACCGTCAACAAGCACATCATTCGCAAGACCTGGCCTCTAGCG
GACATGGAGTCCAACCTTGACTCTGTCGGCAGCGCCAACTTCATCAGCGT
TGCAAACGTCCAGTCAGCGTACTGGCAGATTCCTGTTCATCCTGACCACG
TCGAAAGGACAGCCTTTGTCACCAACTCTGGCAAGTACTGTTACAAGCGG
ATGCCGTTTGGTGTTTGCCATATTCCCGAATTGTTGATTTACATGGATGG
TTTTTGTGTGCTTTCAGCAACTTTCGAGAATCATATGAAGTCTTTGGAGA
GCATGTTCGTAGCTCTCCAAGCAGCAGGTCTGACATTGAAACCTTCGAAG
ATTTCGTTTGGCCCCAAGTCCATCGAGTATTTGGGACATATTATTTCGGC
TGAAGGTATTTCTGTCGGGAAGGATCGTATCAAAGCCGTCCAAAACCTTC
CTACTCCTCGTTGCCTGAAAGATCTTCGCTCAGTACTCGGGGTGGTTAAT
TTTGTGCGCCGGTTCATACCGGATTATGCAGAAATAACCAATCCGTTGGT
GGAGTTAACTCGCAAAGAGTACGCCACAAAATCACGTTTCGTAAAAGCTT
GGAACAAATCGCACGACGCATCGTTCGCTCATCTAAAGCGGTTATTAACT
TCAGCGCCCGTTCTACACTTCCCAGACTTCGATCGGGAATTCGTAGTTCA
TGTGGATGCATCCGAACATGGGTGTGGCGCGTTTCTTGCCCAGCCGTCCA
AGGCTGATCCAGAGTCTCTTGGCATGATTACGTATTATAGTCATAGATTC
AAACATGGACAGCGTCATTACTCTGCGTCTATGAAAGAGTGTTGCGGTGT
GGTTCTTGCAATTTCGCATTGGCGACCGTACTTATTTGGGAAACACTTTA
CGGTGATCACGGATCATCAAGCGTTGACTCATCTTTTTTATATGCAAGAC
ACCAGCAACATGCTCACTCGTTGGGCTATCGCTCTTCAAAATTATGATTT
TACCGTCAAACACGTAGCGGGAAAATTGAACGTCGGGGTCATCTAG
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