EsuBft1799_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1799_5a-0001
Unique NameEsuBft1799_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:113818..114344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1799_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length52
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_5aEsuBft1799_5aEctocarpus subulatus male Bft15bgeneScaffold_550 113818..114344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_5a-0001-exonEsuBft1799_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 113818..114344 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_5a-0001-exonagat-five_prime_utr-4207Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_550 113818..113926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_5a-0001-cdsEsuBft1799_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 113927..114112 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_5a-0001-exonagat-three_prime_utr-6420Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 114113..114344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1799_5a-0001EsuBft1799_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 113927..114112 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1799_5a-0001 ID=EsuBft1799_5a-0001|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=527bp|location=Sequence derived from alignment at Scaffold_550:113818..114344+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCATC
ACACACACCCAACACCTGTATTCAGGAAAAAAACGGAGAAATAATTGACA
ACACAAGAGATGTTCGTCCGTGCGCCACGGTTCGATGCCGTCCGCATGCT
CTGGTTCCGCTGCTCCGGTGCCGCTTCTCCGGTGCCGCTGTGGCCAGTCC
TAGCACGACCAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTG
TCCATCCCAGTCGGTCCCTCGTTCTCTCCCTCGTTGTGCACTTAGGGTTC
TTGGTCTAAAAATTCTCGCGCCGAAGGATCAACCAGCCCAACCAGCTCGT
CACCACCTGTCCCCTCCTCGTTTGATGGCAAAACCAGGTTACTGAGACAG
TACAGCTCCCTCTAGCAAACCTAGGGCCGTGTACATAGTGCCCGTCCACC
TTTCTGATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCATTGCTGC
CTACACCGACGGCCTGGAGGCCCGCGC
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protein sequence of EsuBft1799_5a-0001

>EsuBft1799_5 ID=EsuBft1799_5|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MFVRAPRFDAVRMLWFRCSGAASPVPLWPVLARPNSTRSASYTLSLLSIP
VGPSFSPSLCT
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mRNA from alignment at Scaffold_550:113818..114344+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1799_5a-0001 ID=EsuBft1799_5a-0001|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=527bp|location=Sequence derived from alignment at Scaffold_550:113818..114344+ (Ectocarpus subulatus male Bft15b)
TTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCATC
ACACACACCCAACACCTGTATTCAGGAAAAAAACGGAGAAATAATTGACA
ACACAAGAGATGTTCGTCCGTGCGCCACGGTTCGATGCCGTCCGCATGCT
CTGGTTCCGCTGCTCCGGTGCCGCTTCTCCGGTGCCGCTGTGGCCAGTCC
TAGCACGACCAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTG
TCCATCCCAGTCGGTCCCTCGTTCTCTCCCTCGTTGTGCACTTAGGGTTC
TTGGTCTAAAAATTCTCGCGCCGAAGGATCAACCAGCCCAACCAGCTCGT
CACCACCTGTCCCCTCCTCGTTTGATGGCAAAACCAGGTTACTGAGACAG
TACAGCTCCCTCTAGCAAACCTAGGGCCGTGTACATAGTGCCCGTCCACC
TTTCTGATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCATTGCTGC
CTACACCGACGGCCTGGAGGCCCGCGC
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Coding sequence (CDS) from alignment at Scaffold_550:113818..114344+

>EsuBft1799_5a-0001 ID=EsuBft1799_5a-0001|Name=EsuBft1799_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_550:113818..114344+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTCCGTGCGCCACGGTTCGATGCCGTCCGCATGCTCTGGTTCCG
CTGCTCCGGTGCCGCTTCTCCGGTGCCGCTGTGGCCAGTCCTAGCACGAC
CAAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTGTCCATCCCA
GTCGGTCCCTCGTTCTCTCCCTCGTTGTGCACTTAG
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