Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1799_2 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 88 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1799_2a-0001 ID=EsuBft1799_2a-0001|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=883bp|location=Sequence derived from alignment at Scaffold_550:138299..141155+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGGGGAGACTCTACTCCTCCATCTGTCCCACATGGACGCGACGAGGCGGG
CGGTGCTTAGTGGTACGGCAATCAGCCACGCATTCGACAACCTCCTCCGT
CCTTTGGCCGACAACCTGATATGGATGACCCGGAACAAGCTGGCCAAGAG
AGCGCTGACCAACAACTACTTGAAAAAGCTGTTGCTTGACGCGTATCTGG
CCTTCGAAGCCCTCACCGACCACCCCTACGGCTTCTTCAGCTTCATCGAC
GGGTATTTTCCGCTTCTTTCGAGTTTTGACGGCTGCGCCAAGGTGGCGAC
CAACATCTGCATCGAGAAGTACCTGCAACAGCGCATGCTGCAAGTGATCG
ACATGAGCCTTGATGCGATCTGGCTCGTCATCAGCATGCTGTCGCCGATG
GTGTTCGGAATGCGGCTGCAGTTCTCACAAAACACGCCGGTGACTTTTTG
CCCCCAAAACCGCAAGTCCAACATCATCGTGGTACCTGCTCGTGGACATG
CCCCGCGTAGCGGAGATGCACAGGCTGCCGATGGCCAAAAACTGATGGAG
CGTGTCCGGGAGAACAAGGATGGCCTTGGACTGTCGGAGATGTTGGAGGG
CATGTCGCTGGACGGGCTGAAAGACCTCTATCGTTTGTGCTTTGGGCCGC
GAGCGCCGGGAAATAGCAGGTACCCCAACAGGGTGCTGTTGATTGAGCTG
TTCAAGACGGTGGAGAAGCTCTGGCGGGAGAGCAACCATGGAAAGGAGGA
TTGCTCGTCTGGGGTGGAGGGGGGGTACAGCCCGGACGGAGTCCAGACGT
GCCATATGTTCATGCTGCGGGCGGAGAGCCCCACAGACTTGGCCGTGCTC
CTGTTGCACCACGTGGTGAGTGCCCCGTTGTAG back to topprotein sequence of EsuBft1799_2a-0001 >EsuBft1799_2 ID=EsuBft1799_2|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=283bp
MDATRRAVLSGTAISHAFDNLLRPLADNLIWMTRNKLAKRALTNNYLKKL
LLDAYLAFEALTDHPYGFFSFIDGYFPLLSSFDGCAKVATNICIEKYLQQ
RMLQVIDMSLDAIWLVISMLSPMVFGMRLQFSQNTPVTFCPQNRKSNIIV
VPARGHAPRSGDAQAADGQKLMERVRENKDGLGLSEMLEGMSLDGLKDLY
RLCFGPRAPGNSRYPNRVLLIELFKTVEKLWRESNHGKEDCSSGVEGGYS
PDGVQTCHMFMLRAESPTDLAVLLLHHVVSAPL back to topmRNA from alignment at Scaffold_550:138299..141155+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1799_2a-0001 ID=EsuBft1799_2a-0001|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2857bp|location=Sequence derived from alignment at Scaffold_550:138299..141155+ (Ectocarpus subulatus male Bft15b)
CGGGGAGACTCTACTCCTCCATCTGTCCCACATGGACGCGACGAGGCGGG
CGGTGCTTAGTGGTACGGCAATCAGCCACGCATTCGACAACCTCCTCCGT
CCTTTGGCCGACAACCTGATATGGATGACCCGGAACAAGCTGGCCAAGAG
GTGATTGTGAAAATCGTCATCATCCACTGTTTGTTGTTCTTTGCCTTCCA
CTTGTAGCAGCACGGAGCGATCCAATGTGTCACGGGGGGGTGTTAACCTG
AGACTGCAAGGGAAACACCCGTCTTCGGGAGCAGCCCTCCGTGATCAAGC
TAGGAAATAAATATTAACCCCTTCGAACTCCAGCCCCGAAACCCTTGTTG
GCTATCGTAAATCAAACGCACGATCTTCGAACCGAATGCAGCAATTAGTG
CAGGTGTGGCAATGCCAAGGCGGTAGGTCGTAGCCACTGTATTTATCCCC
CACATTTTGACCTCAAAGTCGAATGTAGGACAACCTAATTCCGGCTTTCC
TGGGGGATCAAAGTACGATATTGTTTCAAGGAGTCATTGATCACACTTTT
CCCTCAGGGCTGTTGTTATGTAAGTCGTTCCCAGTACATTTCGTATCCCC
CTCCCAGGGGACGTTGGATGAGGATACCGCAAAGCGCTTTTAGTATTCAC
GGAGGTGCGAGGGTTTTCCAAACCGCTTCGTTTGTTTTCGCGCCCCCGGT
CCCACTGCATCTATTCTCATTTTTTTTCCCGCCCCCCCCCTGCGAAGTCA
AACCAATGCGCGGAAGGAAAGGACAACGAAGTCTTTGGGCTGGTCTTAGG
ATAGGGACAAGAAGGGGTGGGGGGAATATAGCTGAAACATGTTGGGTATA
TTGCGGTAGTATCTCGGCTGGTCTGCATCGTGCAACAAGTAGTTTGACCA
GCTGGGTGGGGTGCAATTTCGTTGCAGAGAGGGTTATTGAGCATCGGCAG
CACATTGTTTTGGCCTACAGTACTTGCCATTTATATTCACCCGGTACTTG
CGTGAAGGCGGCATGTACCTCCGTGCCAAAACATTATGTTGAGGAAGCTG
ATGTGTACCGGCAACATGCGCTCCGTGGTAGAGCTGGGCTCCGGCGTGTC
TCAAGCGATTTTTCTTAAGAATGTCACCCTCGAGGTGGCACGGTCAACCG
TCGTGCGATCGTTCTTGAAAGGTGTTCATGTCCCATGTTATCGCAGTACC
GAATTAAATACCGGAGTGGAAAATGCAAATAGATCACTTTGTTTTGGTTT
TTCGCATCACGGTGCGGACTGGTTCCCTGGGCGTTGGTAATGCGCGGTGC
AGCATGGACGTGTTGATACGTAGGGGCGTGACCCCCCAACGCTTGGAATG
AAGCTCACTCCCCTTCCGGCATGTTCCTGTTGCTGTCCCCGGCCTACCGC
TCTCTCCTGCCAGAGCGCTGACCAACAACTACTTGAAAAAGCTGTTGCTT
GACGCGTATCTGGCCTTCGAAGCCCTCACCGACCACCCCTACGGCTTCTT
CAGCTTCATCGACGGGTATTTTCCGCTTCTTTCGAGTTTTGACGGCTGCG
CCAAGGTGGCGACCAACATCTGCATCGAGAAGTACCTGCAACAGCGCATG
CTGCAAGTGATCGACATGAGCCTTGATGCGATCTGGCTCGTCATCAGCAT
GCTGTCGCCGATGGTGTTCGGAATGCGGCTGCAGTTCTCACAAAACACGC
CGGTGACTTTTTGCCCCCAAAACCGCAAGTCCAACATCATCGTGGTACCT
GCTCGTGGACATGCCCCGCGTAGCGGAGATGCACAGGCTGCCGATGGCCA
AAAACTGATGGAGCGTGTCCGGGAGAACAAGGATGGCCTTGGACTGTCGG
AGATGTTGGAGGGCATGTCGCTGGACGGGCTGAAAGACCTCTATCGTTTG
TGCTTTGGGCCGCGAGCGCCGGGAAATAGCAGGTATGTTTCACGAGAAGC
TACAGCGATTTCTTTTGCCCATATCGTCAATATTCTTGAGGTGGTAGTGC
TTATTACAGAATGCATCGCTTAATTTCCGTAGTATTTAGTTTTTTTCCCC
GTTTGGTACTCTGCGATGATCATGTTGCGTTTTGTTCGAGAAGAAACAGT
GCTTCCGTGAGGCACTACGAGAAACCGTTTCTTGGTTTTTACGCAGGGGT
TGTACTTGTCATAGTTCCACCGCACATTTGAAGTTGCTCCATTGAGGGCT
GAGAGGTAGCTCGAGACTATTGCAGTAGTTGATTCAACAGGTATCATTAT
TCATATCGAAAACATCGACAGCTATCCGCACGTTTGTTTTCCGTGTGGGG
GAGTAGTCGAGATCGTCGGAAATATGGACGCCCGCCATGTGCGTCCAATT
TATGCATTCGGGCCGGGTGTTTCGCTCATCAAGGTAACGTCTGTTGCAAA
CCTCCAAACTTATCCATCTCACATCTCAAGAAAAGACTCGGGACGCCGAA
AGTGCATGTGCACCAATGTGGGAACCTTTCATTTATCGCGCAGTGCGAGA
CATGCTTCCTTTTTCCACACGAAGTAGGGCGTGTTTGCATACAGCAAAGA
GCAATTGCACTGCCATGAGCACCGATCGCTCTCATACAAGATTTTCTGTC
GGTCTCTTGTACACTGCCCCCCCTCCACTCCCCCCACCCTCAGGTACCCC
AACAGGGTGCTGTTGATTGAGCTGTTCAAGACGGTGGAGAAGCTCTGGCG
GGAGAGCAACCATGGAAAGGAGGATTGCTCGTCTGGGGTGGAGGGGGGGT
ACAGCCCGGACGGAGTCCAGACGTGCCATATGTTCATGCTGCGGGCGGAG
AGCCCCACAGACTTGGCCGTGCTCCTGTTGCACCACGTGGTGAGTGCCCC
GTTGTAG back to topCoding sequence (CDS) from alignment at Scaffold_550:138299..141155+ >EsuBft1799_2a-0001 ID=EsuBft1799_2a-0001|Name=EsuBft1799_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=852bp|location=Sequence derived from alignment at Scaffold_550:138299..141155+ (Ectocarpus subulatus male Bft15b)
ATGGACGCGACGAGGCGGGCGGTGCTTAGTGGTACGGCAATCAGCCACGC
ATTCGACAACCTCCTCCGTCCTTTGGCCGACAACCTGATATGGATGACCC
GGAACAAGCTGGCCAAGAGAGCGCTGACCAACAACTACTTGAAAAAGCTG
TTGCTTGACGCGTATCTGGCCTTCGAAGCCCTCACCGACCACCCCTACGG
CTTCTTCAGCTTCATCGACGGGTATTTTCCGCTTCTTTCGAGTTTTGACG
GCTGCGCCAAGGTGGCGACCAACATCTGCATCGAGAAGTACCTGCAACAG
CGCATGCTGCAAGTGATCGACATGAGCCTTGATGCGATCTGGCTCGTCAT
CAGCATGCTGTCGCCGATGGTGTTCGGAATGCGGCTGCAGTTCTCACAAA
ACACGCCGGTGACTTTTTGCCCCCAAAACCGCAAGTCCAACATCATCGTG
GTACCTGCTCGTGGACATGCCCCGCGTAGCGGAGATGCACAGGCTGCCGA
TGGCCAAAAACTGATGGAGCGTGTCCGGGAGAACAAGGATGGCCTTGGAC
TGTCGGAGATGTTGGAGGGCATGTCGCTGGACGGGCTGAAAGACCTCTAT
CGTTTGTGCTTTGGGCCGCGAGCGCCGGGAAATAGCAGGTACCCCAACAG
GGTGCTGTTGATTGAGCTGTTCAAGACGGTGGAGAAGCTCTGGCGGGAGA
GCAACCATGGAAAGGAGGATTGCTCGTCTGGGGTGGAGGGGGGGTACAGC
CCGGACGGAGTCCAGACGTGCCATATGTTCATGCTGCGGGCGGAGAGCCC
CACAGACTTGGCCGTGCTCCTGTTGCACCACGTGGTGAGTGCCCCGTTGT
AG back to top
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