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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7029.ACYPI067527-PA |
| ProteomeId | EsuBft1793_4 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | PR01217 |
| Protein domains | IPR013103 |
| Protein domains | IPR001584 |
| Protein domains | IPR012337 |
| Protein domains | TMhelix |
| Protein domains | PTHR11439 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 7029.ACYPI067527-PA|- |
| Length | 2669 |
| Hectar predicted targeting category | signal anchor |
| Evalue | 2.85e-21 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38VJ1@33154|Opisthokonta,3CB3U@33208|Metazoa,3DT1J@33213|Bilateria,4294G@6656|Arthropoda,3SW1M@50557|Insecta,3EE1Z@33342|Paraneoptera |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0003676 |
| GO | 0003824 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1793_4a-0001 ID=EsuBft1793_4a-0001|Name=EsuBft1793_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2669bp|location=Sequence derived from alignment at Scaffold_370:334273..337758- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACGGGGCAAGAGGGCGTCGGTGCCGAAGGGGCCGGGAGCACGGGCG TCGAAGCCACTCGGGCGTGTTCACCTGGATCTGTGTGGCGCCTTCCCTGG GCGGCAACCTTTACCTGTTCGTCGCGCTCGACAGCGCCCCGCGGTGGAAC AAGATCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCTACAAAACG GCTGCAGGCGGACGTGGGGCGGTACGACCTCGGCCGCATCGAGTGCTACC GGATCGACAACGGCACCGAGTGGACCCGGGGCGAGTTTCGGCGTTTCCGC GACGACAACGGCATCGGCGTCGAGTTCACCCCGCCTGGCGTCCCGCAGTA CAACGGCGTCGTCCAGAGCGCCATCTGGCGCATCATGAAGGCCGGCATGG CCGCTCGCCGCAGCGCTGCCCGTGTGCTCAACGTCGACTACGCCTCAATC CCCGGCCTCGACCCGCGCGGTGACCGTCTTTGGTTGGTTTCTGCGAAGTG GGCCGCCGACGCTTTCAACCAGTCGGCGACCAAGGCCAACCCCGGGCGTC GCTCTCCGCACGAGCTATTCACCGGTCAGCAGGGGCCGTTCCGCGTGCTG CCGTTCTTCCAGCTCAGCTACATGCGTGAGGATCGCCGCACCAAGCTCGA CGACCAGGCCACCCTGTGCTATTACCTGAACGGCGGCGACAACCCCCCGA GCGGCACCGTCAAGGTCCTCAAGGCGCCCACCGGCCGCGTCGTCTACACC AACAATGTGTCGTGGGTGGCGTCGTCGCCAGCTGGCGAGGGGGGTTCCGC TGGCATCCCCGCTGCGCCGACGCCTCCCCCGTTCACGCCGGTCGTCTTGA TCAACTTCGGCCCAGCCCCGACGCCTTCGACCGCCGCACAGTCGCCGCCA GCGCACACGCCCACGCCGTCGCCCGCACCCGCTCCTGGCCAGCCGCCCTC TGCCGCTTCGCCGTCATCGTCGGCGACCCCCGCTCCTGGCCAGACTCCTT CTGCCACATCGCCGTCACCGTCGGCGACCCCATCTCCAGTTCAGCTACCG CCGTTGCCGCCGCCGCCGCCGCCGCCGGGCCCCGCGTTGCCCCCGCTCTC GGCTCACGCCATGCGGCAGCTTCGCCCGGGCAAGAAGGCCGAGGGTATGA AGGACCCGCGGCTGCCAGGCCGCACGAGATCGGGCACGAGGCACAGCACA GGGCTCATCTCGATACTGGACAAGAACACTCTGGTATCGATGCTGGAGGC CCAGAGCGCGATGGAGGAGAAGCACAGGGAGCCAGGGGGAGCGGGGAGCG GAGAGACGGGGGGAGCGGAGACCGGAGAACAGGGGGGAGCGCTCGCAGCC GTGGACCTGGGGGCTGGAGGAGCGGGCTTCTCACTTGCATGTGCCACGCT CCTCGCCAACCGGGAGCCAGGGGGAGCGGGGAGCGGAGAGACGGGGGGAG CGGAGACCGGAGAACAGGGGGGAGCGCTCGCAGCCGTGGACCTGGGGGCT GGAGGAGCGGGCTTCTCACTTGCATGTGCCACGCTCCTCGCCAACCGGTT AGACATCGATGCCATGCTGCGCGACCAGCGCCCGCCGGAGCAACGCCCTG ATCACCCGCACTGCCAGGCGAGCGACCTTCGCATCCCCAAGAGCTACGAC GAGGCTATGGCGTCGGAGTATCGGCACCTCTGCGGCGACTCGATGAAAAG GGAGCTCTTCGAGTTGCTGGAAGCGGGGACTTTTCTCCGGCGAAATGAGT TTGGATGGGCCACTAAGGCCAAGTCGAGACTTGTAGCGAGAGGTGATATG CAGAGAGAGTACATTGACTTTGGAGAGTTGTACGCGCCTACCGTTTCTGT TTCGTGTGTTAGGATGTTGGCTGCGTTGGCGTGCGAGTTGAACCTCGACT TGTGTCATTTCGATATTGAGCACGCTTGTGTGCGTTCGGAGTTGGAAGAA GACGTATATATGCGATGGCCGCAGGGATGTGGAGCTCTATCTGGAATGAT TGTAAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGT GGCATGCAATGCTGAAGAGGTTGACGATTTCTCAGCAGACTTTCACGGAT GAGCTAGCAGCAGAGTATGGAGTAGCAGGGGGTAAGAGCGTTCCCATGTC TTCGGGGTTCAAGCTTTCTGACTTTGATGCGGATGAAGAGGCGACAGATT TTCCGTTTCGTGAGATAGTAGGACCTTCGATGTGGCTGGCGGCTCAGACT AGGCCAGACATTGCGAATGCAGTAAGGGCAGTAGCTAGATATTGCGCGTC TCAGAAGCAGGTGTACTGGGATGCAGCGATGGGTATATTAGGGGGTACGC TGATGCGGACTTTGCGAGCAAGGCAGCAGACCGTAGGTCGGTAGCAGGGG GGATAGTAACATGCGGAGGAGGCGTTGTGTCTTGGTTTTCCAGAACGCAG AAGTGCGCTACGCTTTCGACAACAGAAGCAGGGTAGTATGTCGCTNGCTA GGCGACGTAGTGAAGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCAT GTTGCCGCAGGTCGGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGG GGGCGATTCAACTAGCGCAGAACCCCATCTCGAACTCGAACTCGAAGCAC ATTGATGTAAGGCACCATT back to topprotein sequence of EsuBft1793_4a-0001 >EsuBft1793_4 ID=EsuBft1793_4|Name=EsuBft1793_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=797bp
MDGARGRRCRRGREHGRRSHSGVFTWICVAPSLGGNLYLFVALDSAPRWN KIYGLRRKSDALAATKRLQADVGRYDLGRIECYRIDNGTEWTRGEFRRFR DDNGIGVEFTPPGVPQYNGVVQSAIWRIMKAGMAARRSAARVLNVDYASI PGLDPRGDRLWLVSAKWAADAFNQSATKANPGRRSPHELFTGQQGPFRVL PFFQLSYMREDRRTKLDDQATLCYYLNGGDNPPSGTVKVLKAPTGRVVYT NNVSWVASSPAGEGGSAGIPAAPTPPPFTPVVLINFGPAPTPSTAAQSPP AHTPTPSPAPAPGQPPSAASPSSSATPAPGQTPSATSPSPSATPSPVQLP PLPPPPPPPGPALPPLSAHAMRQLRPGKKAEGMKDPRLPGRTRSGTRHST GLISILDKNTLVSMLEAQSAMEEKHREPGGAGSGETGGAETGEQGGALAA VDLGAGGAGFSLACATLLANREPGGAGSGETGGAETGEQGGALAAVDLGA GGAGFSLACATLLANRLDIDAMLRDQRPPEQRPDHPHCQASDLRIPKSYD EAMASEYRHLCGDSMKRELFELLEAGTFLRRNEFGWATKAKSRLVARGDM QREYIDFGELYAPTVSVSCVRMLAALACELNLDLCHFDIEHACVRSELEE DVYMRWPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRLTISQQTFTD ELAAEYGVAGGKSVPMSSGFKLSDFDADEEATDFPFREIVGPSMWLAAQT RPDIANAVRAVARYCASQKQVYWDAAMGILGGTLMRTLRARQQTVGR back to topmRNA from alignment at Scaffold_370:334273..337758- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1793_4a-0001 ID=EsuBft1793_4a-0001|Name=EsuBft1793_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3486bp|location=Sequence derived from alignment at Scaffold_370:334273..337758- (Ectocarpus subulatus male Bft15b) ATGGACGGGTATGACAATACCCCGTACCAAGATTTTTTCACCGCGTTCAT
GCTAGAGAATGAAGCTGCGATCGCGGCTGGTGTTATGGATGGAATTGATG
GTGGTGTTGGCTTTGACGTGGGTGTGGCTGCTCTTGGTCCTGGTGCGTCC
CCGCTTTCCATTTGTTCGACCGACAAGTCCGTCGACATCAACCGCTTCCA
CCGTTTCCTTGCCCACGCTTGTGAACCTCTATTGAGAGAAACTGCCCGGC
AGAGGGGCATCACTCTCACGGGAACGTTGGAACCATGCACGGACTGCATG
AAGGTGAAGGGCAAGAGGGCGTCGGTGCCGAAGGGGCCGGGAGCACGGGC
GTCGAAGCCACTCGGGCGTGTTCACCTGGATCTGTGTGGCGCCTTCCCTG
GGCGGCAACCTTTACCTGTTCGTCGCGCTCGACAGCGCCCCGCGGTGGAA
CAAGATCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCTACAAAAC
GGCTGCAGGCGGACGTGGGGCGGTACGACCTCGGCCGCATCGAGTGCTAC
CGGATCGACAACGGCACCGAGTGGACCCGGGGCGAGTTTCGGCGTTTCCG
CGACGACAACGGCATCGGCGTCGAGTTCACCCCGCCTGGCGTCCCGCAGT
ACAACGGCGTCGTCCAGAGCGCCATCTGGCGCATCATGAAGGCCGGCATG
GCCGCTCGCCGCAGCGCTGCCCGTGTGCTCAACGTCGACTACGCCTCAAT
CCCCGGCCTCGACCCGCGCGGTGACCGTCTTTGGTTGGTTTCTGCGAAGT
GGGCCGCCGACGCTTTCAACCAGTCGGCGACCAAGGCCAACCCCGGGCGT
CGCTCTCCGCACGAGCTATTCACCGGTCAGCAGGGGCCGTTCCGCGTGCT
GCCGTTCTTCCAGCTCAGCTACATGCGTGAGGATCGCCGCACCAAGCTCG
ACGACCAGGCCACCCTGTGCTATTACCTGAACGGCGGCGACAACCCCCCG
AGCGGCACCGTCAAGGTCCTCAAGGCGCCCACCGGCCGCGTCGTCTACAC
CAACAATGTGTCGTGGGTGGCGTCGTCGCCAGCTGGCGAGGGGGGTTCCG
CTGGCATCCCCGCTGCGCCGACGCCTCCCCCGTTCACGCCGGTCGTCTTG
ATCAACTTCGGCCCAGCCCCGACGCCTTCGACCGCCGCACAGTCGCCGCC
AGCGCACACGCCCACGCCGTCGCCCGCACCCGCTCCTGGCCAGCCGCCCT
CTGCCGCTTCGCCGTCATCGTCGGCGACCCCCGCTCCTGGCCAGACTCCT
TCTGCCACATCGCCGTCACCGTCGGCGACCCCATCTCCAGTTCAGCTACC
GCCGTTGCCGCCGCCGCCGCCGCCGCCGGGCCCCGCGTTGCCCCCGCTCT
CGGCTCACGCCATGCGGCAGCTTCGCCCGGGCAAGAAGGCCGAGGGTATG
AAGGACCCGCGGCTGCCAGGCCGCACGAGATCGGGCACGAGGCACAGCAC
AGGGCTCATCTCGATACTGGACAAGAACACTCTGGTATCGATGCTGGAGG
CCCAGAGCGCGATGGAGGAGAAGCACAGGGAGCCAGGGGGAGCGGGGAGC
GGAGAGACGGGGGGAGCGGAGACCGGAGAACAGGGGGGAGCGCTCGCAGC
CGTGGACCTGGGGGCTGGAGGAGCGGGCTTCTCACTTGCATGTGCCACGC
TCCTCGCCAACCGGTTNCGATACTGGACAAGAACACTCTGGTATCGATGC
TGGAGGCCCAGAGCGCGATGGAGGAGAAGCACAGGGAGCCAGGGGGAGCG
GGGAGCGGAGAGACGGGGGGAGCGGAGACCGGAGAACAGGGGGGAGCGCT
CGCAGCCGTGGACCTGGGGGCTGGAGGAGCGGGCTTCTCACTTGCATGTG
CCACGCTCCTCGCCAACCGGTTAGACATCGATGCCATGCTGCGCGACCAG
CGCCCGCCGGAGCAACGCCCTGATCACCCGCACTGCCAGGCGAGCGACCT
TCGCATCCCCAAGAGCTACGACGAGGCTATGGCGTCGGAGTATCGGCACC
TCTGCGGCGACTCGATGAAAAGGGAGCTCTTCGAGTTGCTGGAAGCGGGG
ACTTTTCTCCGGCGAAGTAGCAATCAGTGCAGAACGCGATAAACGCGGAG
TGGGTATTCAATTGGAAGGCAGATGAGTTTGGATGGGCCACTAAGGCCAA
GTCGAGACTTGTAGCGAGAGGTGATATGCAGAGAGAGTACATTGACTTTG
GAGAGTTGTACGCGCCTACCGTTTCTGTTTCGTGTGTTAGGATGTTGGCT
GCGTTGGCGTGCGAGTTGAACCTCGACTTGTGTCATTTCGATATTGAGCA
CGCTTGTGTGCGTTCGGAGTTGGAAGAAGACGTATATATGCGATGGCCGC
AGGGATGTGGAGCTCTATCTGGAATGATTGTAAAACTAGGCAAGAGTCTG
TATGGCTTGAGACAGGCATCTAGGCAGTGGCATGCAATGCTGAAGAGGTG
TTTGGTGGCGTTAGGATTTGAGCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAG
TTTGGCGCCGACCTTAATAAGTCCGTGCCGGTGAAGAACCTGGGAGAGTT
GAGATGATATTCTGGGTGTTTTTACGAGAANTTTGCTGTTGGAGAGAGGG
AGAGATGTGATAAGTTTGGCGCTGACCTTAACAAGTCCGTGCCAGTGAAG
AACCTGGGAGAGTTGAGATGGTATTCTGGGTGCTTTTACGAGAGGAATAA
GGAGACCGGTAGGTTGACGATTTCTCAGCAGACTTTCACGGATGAGCTAG
CAGCAGAGTATGGAGTAGCAGGGGGTAAGAGCGTTCCCATGTCTTCGGGG
TTCAAGCTTTCTGACTTTGATGCGGATGAAGAGGCGACAGATTTTCCGTT
TCGTGAGATAGTAGGACCTTCGATGTGGCTGGCGGCTCAGACTAGGCCAG
ACATTGCGAATGCAGTAAGGGCAGTAGCTAGATATTGCGCGTCTCAGAAG
CAGGTGTACTGGGATGCAGCGATGGGTATATTAGGGTATGCGAAGAGGAC
GAGTTACATGGGTGTTTCATTTCAGAGAGGTACTGTAGAAGGAAGGATCC
AACTTGCAGGGGTACGCTGATGCGGACTTTGCGAGCAAGGCAGCAGACCG
TAGGTCGGTAGCAGGGGGGATAGTAACATGCGGAGGAGGCGTTGTGTCTT
GGTTTTCCAGAACGCAGAAGTGCGCTACGCTTTCGACAACAGAAGCAGGG
TAGTATGTCGCTNGCTAGGCGACGTAGTGAAGGAGATTTTGTTTTTGAGG
CAGATTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATCCCCGT
CTTCGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCATCTCGA
ACTCGAACTCGAAGCACATTGATGTAAGGCACCATT back to topCoding sequence (CDS) from alignment at Scaffold_370:334273..337758- >EsuBft1793_4a-0001 ID=EsuBft1793_4a-0001|Name=EsuBft1793_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2394bp|location=Sequence derived from alignment at Scaffold_370:334273..337758- (Ectocarpus subulatus male Bft15b) ATGGACGGGGCAAGAGGGCGTCGGTGCCGAAGGGGCCGGGAGCACGGGCG TCGAAGCCACTCGGGCGTGTTCACCTGGATCTGTGTGGCGCCTTCCCTGG GCGGCAACCTTTACCTGTTCGTCGCGCTCGACAGCGCCCCGCGGTGGAAC AAGATCTACGGTCTCCGGCGGAAGTCCGACGCGCTGGCGGCTACAAAACG GCTGCAGGCGGACGTGGGGCGGTACGACCTCGGCCGCATCGAGTGCTACC GGATCGACAACGGCACCGAGTGGACCCGGGGCGAGTTTCGGCGTTTCCGC GACGACAACGGCATCGGCGTCGAGTTCACCCCGCCTGGCGTCCCGCAGTA CAACGGCGTCGTCCAGAGCGCCATCTGGCGCATCATGAAGGCCGGCATGG CCGCTCGCCGCAGCGCTGCCCGTGTGCTCAACGTCGACTACGCCTCAATC CCCGGCCTCGACCCGCGCGGTGACCGTCTTTGGTTGGTTTCTGCGAAGTG GGCCGCCGACGCTTTCAACCAGTCGGCGACCAAGGCCAACCCCGGGCGTC GCTCTCCGCACGAGCTATTCACCGGTCAGCAGGGGCCGTTCCGCGTGCTG CCGTTCTTCCAGCTCAGCTACATGCGTGAGGATCGCCGCACCAAGCTCGA CGACCAGGCCACCCTGTGCTATTACCTGAACGGCGGCGACAACCCCCCGA GCGGCACCGTCAAGGTCCTCAAGGCGCCCACCGGCCGCGTCGTCTACACC AACAATGTGTCGTGGGTGGCGTCGTCGCCAGCTGGCGAGGGGGGTTCCGC TGGCATCCCCGCTGCGCCGACGCCTCCCCCGTTCACGCCGGTCGTCTTGA TCAACTTCGGCCCAGCCCCGACGCCTTCGACCGCCGCACAGTCGCCGCCA GCGCACACGCCCACGCCGTCGCCCGCACCCGCTCCTGGCCAGCCGCCCTC TGCCGCTTCGCCGTCATCGTCGGCGACCCCCGCTCCTGGCCAGACTCCTT CTGCCACATCGCCGTCACCGTCGGCGACCCCATCTCCAGTTCAGCTACCG CCGTTGCCGCCGCCGCCGCCGCCGCCGGGCCCCGCGTTGCCCCCGCTCTC GGCTCACGCCATGCGGCAGCTTCGCCCGGGCAAGAAGGCCGAGGGTATGA AGGACCCGCGGCTGCCAGGCCGCACGAGATCGGGCACGAGGCACAGCACA GGGCTCATCTCGATACTGGACAAGAACACTCTGGTATCGATGCTGGAGGC CCAGAGCGCGATGGAGGAGAAGCACAGGGAGCCAGGGGGAGCGGGGAGCG GAGAGACGGGGGGAGCGGAGACCGGAGAACAGGGGGGAGCGCTCGCAGCC GTGGACCTGGGGGCTGGAGGAGCGGGCTTCTCACTTGCATGTGCCACGCT CCTCGCCAACCGGGAGCCAGGGGGAGCGGGGAGCGGAGAGACGGGGGGAG CGGAGACCGGAGAACAGGGGGGAGCGCTCGCAGCCGTGGACCTGGGGGCT GGAGGAGCGGGCTTCTCACTTGCATGTGCCACGCTCCTCGCCAACCGGTT AGACATCGATGCCATGCTGCGCGACCAGCGCCCGCCGGAGCAACGCCCTG ATCACCCGCACTGCCAGGCGAGCGACCTTCGCATCCCCAAGAGCTACGAC GAGGCTATGGCGTCGGAGTATCGGCACCTCTGCGGCGACTCGATGAAAAG GGAGCTCTTCGAGTTGCTGGAAGCGGGGACTTTTCTCCGGCGAAATGAGT TTGGATGGGCCACTAAGGCCAAGTCGAGACTTGTAGCGAGAGGTGATATG CAGAGAGAGTACATTGACTTTGGAGAGTTGTACGCGCCTACCGTTTCTGT TTCGTGTGTTAGGATGTTGGCTGCGTTGGCGTGCGAGTTGAACCTCGACT TGTGTCATTTCGATATTGAGCACGCTTGTGTGCGTTCGGAGTTGGAAGAA GACGTATATATGCGATGGCCGCAGGGATGTGGAGCTCTATCTGGAATGAT TGTAAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGT GGCATGCAATGCTGAAGAGGTTGACGATTTCTCAGCAGACTTTCACGGAT GAGCTAGCAGCAGAGTATGGAGTAGCAGGGGGTAAGAGCGTTCCCATGTC TTCGGGGTTCAAGCTTTCTGACTTTGATGCGGATGAAGAGGCGACAGATT TTCCGTTTCGTGAGATAGTAGGACCTTCGATGTGGCTGGCGGCTCAGACT AGGCCAGACATTGCGAATGCAGTAAGGGCAGTAGCTAGATATTGCGCGTC TCAGAAGCAGGTGTACTGGGATGCAGCGATGGGTATATTAGGGGGTACGC TGATGCGGACTTTGCGAGCAAGGCAGCAGACCGTAGGTCGGTAG back to top
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