EsuBft1793_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1793_3a-0001
Unique NameEsuBft1793_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:332692..333432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1793_3
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length30
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1793_3aEsuBft1793_3aEctocarpus subulatus male Bft15bgeneScaffold_370 332692..333432 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1793_3a-0001-exonEsuBft1793_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 332692..332720 +
EsuBft1793_3a-0001-exonagat-exon-56299Ectocarpus subulatus male Bft15bexonScaffold_370 332868..333011 +
EsuBft1793_3a-0001-exonagat-exon-56298Ectocarpus subulatus male Bft15bexonScaffold_370 333297..333432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1793_3a-0001-cdsEsuBft1793_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 332692..332720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1793_3a-0001EsuBft1793_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 332692..333432 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1793_3a-0001 ID=EsuBft1793_3a-0001|Name=EsuBft1793_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=309bp|location=Sequence derived from alignment at Scaffold_370:332692..333432+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCACCTTGCGTTGCTTTTTCCCGGTTGGGGAAAGTGTCCTCATC
CACCTCGCTCGACCCTGCTCACTTTTTTACCACTCAGTCTGGTCATGAAG
CGGAGACTACTGGAGCGATATCCGTCCTCGATGCGAGCGAAGGTCTTGCA
TCCCGGTGGACCACGGCATACTGGAGACTCGCGACCGATACCAATAACTC
CGATGCCGCACAGACGTCTGTCGCTGGGGCGACGGCCAACAACGGCAATC
GCGAGAAGGAACTGCGGGCGGACATGCACGTCATCGGTGATAGGTTGACC
GTCAGGTAG
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protein sequence of EsuBft1793_3a-0001

>EsuBft1793_3 ID=EsuBft1793_3|Name=EsuBft1793_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=102bp
MNSPCVAFSRLGKVSSSTSLDPAHFFTTQSGHEAETTGAISVLDASEGLA
SRWTTAYWRLATDTNNSDAAQTSVAGATANNGNREKELRADMHVIGDRLT
VR
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mRNA from alignment at Scaffold_370:332692..333432+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1793_3a-0001 ID=EsuBft1793_3a-0001|Name=EsuBft1793_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=741bp|location=Sequence derived from alignment at Scaffold_370:332692..333432+ (Ectocarpus subulatus male Bft15b)
ATGAATTCACCTTGCGTTGCTTTTTCCCGGTATAAATGTATGGTTGGTAG
GACCACACCTTGCGTTTTTGGCCACCCACCATGAAGTCGTGCACGGGAAG
CAAATCTGCCAAAAGTTATTCACCAATCTGTTTCACTGGGCTGTGTACCT
TCACTGACCAAGGCGGCCTACGGCAGGTTGGGGAAAGTGTCCTCATCCAC
CTCGCTCGACCCTGCTCACTTTTTTACCACTCAGTCTGGTCATGAAGCGG
AGACTACTGGAGCGATATCCGTCCTCGATGCGAGCGAAGGTCTTGCATCC
CGGTGGACCACGGCATACTGGTAAGGTGTGGGGGTGTTGCTCGGGATATT
GATCAGACAGTTTTCAAATGTGACGAGGCGCTTCCTAGGAGTTACCATTC
CTGCAGAAATCAAGAATGTATCTTCCCAATGAGCTTCACACGAACTCCTG
GACAGAATAAAGTCAGGTGAGGAATACTGTCAACATCCAAGATGAAAGTT
TGAATTGTGATTGACCCCCCGCATGTGTACACCTGCATCTGTTCAACGAT
CATGCCGCCATGATGCAACGTCCGCGTCTCACGCGGTAGACTGAATGCCC
ACCAGGAGACTCGCGACCGATACCAATAACTCCGATGCCGCACAGACGTC
TGTCGCTGGGGCGACGGCCAACAACGGCAATCGCGAGAAGGAACTGCGGG
CGGACATGCACGTCATCGGTGATAGGTTGACCGTCAGGTAG
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Coding sequence (CDS) from alignment at Scaffold_370:332692..333432+

>EsuBft1793_3a-0001 ID=EsuBft1793_3a-0001|Name=EsuBft1793_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=309bp|location=Sequence derived from alignment at Scaffold_370:332692..333432+ (Ectocarpus subulatus male Bft15b)
ATGAATTCACCTTGCGTTGCTTTTTCCCGGTTGGGGAAAGTGTCCTCATC
CACCTCGCTCGACCCTGCTCACTTTTTTACCACTCAGTCTGGTCATGAAG
CGGAGACTACTGGAGCGATATCCGTCCTCGATGCGAGCGAAGGTCTTGCA
TCCCGGTGGACCACGGCATACTGGAGACTCGCGACCGATACCAATAACTC
CGATGCCGCACAGACGTCTGTCGCTGGGGCGACGGCCAACAACGGCAATC
GCGAGAAGGAACTGCGGGCGGACATGCACGTCATCGGTGATAGGTTGACC
GTCAGGTAG
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