EsuBft1791_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1791_4a-0001
Unique Name	EsuBft1791_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_270	contig	Scaffold_270:31557..32825 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	164328.Phyra85923
ProteomeId	EsuBft1791_4
Protein domains	Coil
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	2
Max annot lvl	4776\|Peronosporales
Length	1173
Evalue	1.68e-20
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QGIS@4776\|Peronosporales
Date last modified	2016-06-13
Date creation	2016-06-13
Description	transposition, RNA-mediated
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0043170
GO	0003824
GO	0044238

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1791_4a	EsuBft1791_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_270 31557..32825 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1791_4a-0001-exon	EsuBft1791_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_270 31557..32423 +
EsuBft1791_4a-0001-exon	agat-exon-21825	Ectocarpus subulatus male Bft15b	exon	Scaffold_270 32520..32825 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1791_4a-0001-cds	EsuBft1791_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_270 31557..32423 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1791_4a-0001	EsuBft1791_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_270 31557..32825 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_270:31557..32825+
coding sequence from alignment at Scaffold_270:31557..32825+

spliced messenger RNA

>EsuBft1791_4a-0001 ID=EsuBft1791_4a-0001|Name=EsuBft1791_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1173bp|location=Sequence derived from alignment at Scaffold_270:31557..32825+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAACCGAAGCTGGAACCAAAATCACCACCCGCAATTTCACCTGGCG
CTACGTGCCCGCTGCATCGCCCGCTCCCCCGCAGCTGCCACCTCTCGCAG
ATGACGAGGAGGGCGGGGAAGGCGAGAGCAGAGCGGATGCATCACGCCAA
GGTTGGGGGGGCGAGAGAGACTCAGAGAGTGAGTCCGACCTCCACGTGAT
GGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTGTGTGCGCGAGGAGGCGC
CGACGGCACCCGGCAACGGGATTCCGGAGGACGGAGGCAGCGTTCCCCCG
TCGCCCCCTTCGGGAAGGGGCGACTTCGGCGGAGGCAGTGACAGCCCCAC
CGACAGCAGTAGCAGCAGCAGTGACGCCGGCGGTTCCGGCGGCCCGGGCA
GCGAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCC
GGCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCG
CTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTGTGCGGATCATGTCCTACCTGAAA
TTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTT
CTGTCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGA
GGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGCGA
GGAGCAAGCACATCGACGTGCGCTTCCATTTCATTCGCGAGCTATTCAAG
TTGGGTAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGA
CATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACCGGAAGG
CTCTGATGAACCTACCGATGTAG

protein sequence of EsuBft1791_4a-0001

>EsuBft1791_4 ID=EsuBft1791_4|Name=EsuBft1791_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=390bp
MLTEAGTKITTRNFTWRYVPAASPAPPQLPPLADDEEGGEGESRADASRQ
GWGGERDSESESDLHVMEARGPGQATPCVREEAPTAPGNGIPEDGGSVPP
SPPSGRGDFGGGSDSPTDSSSSSSDAGGSGGPGSEESGDPGGDGGSDGDP
GDSENLEELKYDPADDRYPRGLEGKKLLXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVRIMSYLK
FTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAGVKEALFVRGV
LSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFK
LGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALMNLPM

mRNA from alignment at Scaffold_270:31557..32825+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1791_4a-0001 ID=EsuBft1791_4a-0001|Name=EsuBft1791_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1269bp|location=Sequence derived from alignment at Scaffold_270:31557..32825+ (Ectocarpus subulatus male Bft15b)
ATGCTAACCGAAGCTGGAACCAAAATCACCACCCGCAATTTCACCTGGCG
CTACGTGCCCGCTGCATCGCCCGCTCCCCCGCAGCTGCCACCTCTCGCAG
ATGACGAGGAGGGCGGGGAAGGCGAGAGCAGAGCGGATGCATCACGCCAA
GGTTGGGGGGGCGAGAGAGACTCAGAGAGTGAGTCCGACCTCCACGTGAT
GGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTGTGTGCGCGAGGAGGCGC
CGACGGCACCCGGCAACGGGATTCCGGAGGACGGAGGCAGCGTTCCCCCG
TCGCCCCCTTCGGGAAGGGGCGACTTCGGCGGAGGCAGTGACAGCCCCAC
CGACAGCAGTAGCAGCAGCAGTGACGCCGGCGGTTCCGGCGGCCCGGGCA
GCGAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCC
GGCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCG
CTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTGTGCGGATCATGTCCTACCTGAAA
TTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGTGACCGTAGGTGGTACCGTAGTGTGTGCATCC
ACCAAGACGCAGCCAGTGACGGCTCAGTCGACCTCGGAAGCAGGGTATAT
GGCAGCCGGGGAGGGCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGT
CGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGAGGAC
AACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGCGAGGAG
CAAGCACATCGACGTGCGCTTCCATTTCATTCGCGAGCTATTCAAGTTGG
GTAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGACATG
CTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACCGGAAGGCTCT
GATGAACCTACCGATGTAG

Coding sequence (CDS) from alignment at Scaffold_270:31557..32825+

>EsuBft1791_4a-0001 ID=EsuBft1791_4a-0001|Name=EsuBft1791_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1173bp|location=Sequence derived from alignment at Scaffold_270:31557..32825+ (Ectocarpus subulatus male Bft15b)
ATGCTAACCGAAGCTGGAACCAAAATCACCACCCGCAATTTCACCTGGCG
CTACGTGCCCGCTGCATCGCCCGCTCCCCCGCAGCTGCCACCTCTCGCAG
ATGACGAGGAGGGCGGGGAAGGCGAGAGCAGAGCGGATGCATCACGCCAA
GGTTGGGGGGGCGAGAGAGACTCAGAGAGTGAGTCCGACCTCCACGTGAT
GGAGGCTCGTGGGCCAGGGCAAGCGACGCCGTGTGTGCGCGAGGAGGCGC
CGACGGCACCCGGCAACGGGATTCCGGAGGACGGAGGCAGCGTTCCCCCG
TCGCCCCCTTCGGGAAGGGGCGACTTCGGCGGAGGCAGTGACAGCCCCAC
CGACAGCAGTAGCAGCAGCAGTGACGCCGGCGGTTCCGGCGGCCCGGGCA
GCGAAGAGTCCGGCGACCCAGGTGGGGACGGCGGTAGCGATGGTGATCCC
GGCGACTCCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCCGACGACCG
CTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTGTGCGGATCATGTCCTACCTGAAA
TTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTT
CTGTCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGA
GGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGCGA
GGAGCAAGCACATCGACGTGCGCTTCCATTTCATTCGCGAGCTATTCAAG
TTGGGTAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGA
CATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACCGGAAGG
CTCTGATGAACCTACCGATGTAG