EsuBft1791_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1791_3a-0001
Unique NameEsuBft1791_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_270contigScaffold_270:27070..30224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1791_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length53
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_3aEsuBft1791_3aEctocarpus subulatus male Bft15bgeneScaffold_270 27070..30224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_3a-0001EsuBft1791_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_270 27070..27603 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_3a-0001-exonagat-exon-21824Ectocarpus subulatus male Bft15bexonScaffold_270 27070..27122 +
EsuBft1791_3a-0001-exonEsuBft1791_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_270 27561..27997 +
EsuBft1791_3a-0001-exonagat-exon-21823Ectocarpus subulatus male Bft15bexonScaffold_270 30178..30224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_3a-0001-cdsEsuBft1791_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_270 27070..27122 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_3a-0001-exonagat-three_prime_utr-6396Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_270 27604..27997 +
EsuBft1791_3a-0001-exonagat-three_prime_utr-6397Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_270 30178..30224 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1791_3a-0001 ID=EsuBft1791_3a-0001|Name=EsuBft1791_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=537bp|location=Sequence derived from alignment at Scaffold_270:27070..30224+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTCGTTCGCAGCTGGACGGAGGAGACTGCTGTTGTGGACCCCGC
CAGGTATAAAGGTGCAGATGCGCGGGCCTCCAGGCCGTCGGTGTAGGCAG
CAATGCCCAACTCGTCTTTGTGCGCGGAGGCAGACGTCATCAGGAAGGTG
GACGGGCACTATGTACACGGCCCTAGGTTTGCTAGAGGGAGCTGTACTGC
CTCAGTAACCTGGTTTTGCCATCAAAAGAGGAGGGGACAGGTGGTGACGA
GCTGATTGGGCTGGTTGACCCTTCGGCGCGAGATATTTCAGACCAAGAAC
CCTAAGTGCAACGAGGGAGAAAGCGAGGAACCGACTGGGAAGGACAGCAA
CGAGAGCGTGTACGAAGCGGAGCGGGTCGACCTTGGTCGTGCTAGGACTG
GCCACAGCGGCACCGGAGCAGCGGCACCGGAGGAGCGGAACCGGAGCAGG
CGGACGGCATCGAACCGTGGCGCACGGACAAACATCTCTTGGCGCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1791_3a-0001

>EsuBft1791_3 ID=EsuBft1791_3|Name=EsuBft1791_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=31bp
MTFVRSWTEETAVVDPARYKGADARASRPSV
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mRNA from alignment at Scaffold_270:27070..30224+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1791_3a-0001 ID=EsuBft1791_3a-0001|Name=EsuBft1791_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3155bp|location=Sequence derived from alignment at Scaffold_270:27070..30224+ (Ectocarpus subulatus male Bft15b)
ATGACATTCGTTCGCAGCTGGACGGAGGAGACTGCTGTTGTGGACCCCGC
CAGGTGAGAAACAAGCAGAGTTTGCTGTGTTGCTTGTCACGCACGTCACG
AGAGCGTTGGTGCAGTTGTTTTCATAGTGCCCACATTGAATGTAAATCGT
CATAGAACTGCCTACGTACAAGCATTCATTGCTAGTCTACAACGTTACCC
TCGAGACATGGGTGTCAAGCCTCCCTAGGCCAGCCGAGGCTGACGCAAGA
CGGCATTCCCTAAAACTTGTTCTCGGTTAGTTTATCATCATGATTGATTT
GCTGTAGTATCATCCTTTCTTCCCCTCGCTGCCTCGGCAAGGTTTTGCGT
AGGCATGACCCCTAGCGAGGGGGGGGGTCTTTCTAGCGAACAGGGCTAGA
CTCACCCTCAGGGGACCGATACCTTCTTGCTGCGGCGCACCCGCCGCGAG
GCGTGCGTAGTGGTGATGTTGGGTCGGTACTGGTGCGTCAGGTATAAAGG
TGCAGATGCGCGGGCCTCCAGGCCGTCGGTGTAGGCAGCAATGCCCAACT
CGTCTTTGTGCGCGGAGGCAGACGTCATCAGGAAGGTGGACGGGCACTAT
GTACACGGCCCTAGGTTTGCTAGAGGGAGCTGTACTGCCTCAGTAACCTG
GTTTTGCCATCAAAAGAGGAGGGGACAGGTGGTGACGAGCTGATTGGGCT
GGTTGACCCTTCGGCGCGAGATATTTCAGACCAAGAACCCTAAGTGCAAC
GAGGGAGAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGTA
CGAAGCGGAGCGGGTCGACCTTGGTCGTGCTAGGACTGGCCACAGCGGCA
CCGGAGCAGCGGCACCGGAGGAGCGGAACCGGAGCAGGCGGACGGCATCG
AACCGTGGCGCACGGACAAACATCTCTTGTATTGTCAATTATTTCTCCGT
TTTTTTCCTGAATACAGGTGTTGGGTGTGTTTGATGACGTCACTGGTTTT
GTAGAGCGACGCGGCAGAGACGGCGCGGATAACCCGGGTGCCTTAATTGT
GTACCTGCATCGTGGAAGACCCCTTCAATGTGGAACGATTCCTAGTCAGT
GTCGATGTTTACACTGCTGTGCCTAACACAGATGATCTGGATAGATTCGG
GTGATTGTCAAGTGCAATGATGGCTTTGGTTGGGCGTTCTTCTTCATTGT
ATGTCCACGGACTCGTTCTGACAGACAGCAGCTCCATGCCCCGAGCTTGT
GTACCATGCACCATGGTGTTATTATTGTACAGACAGCACTTCAGACAGCA
GTACGCTGTAGTCGACAAACATTCATTTTGGTTAAATGAGGGACAAGGGG
GGTGACGCTGCTGCTGTAGTCGATTTGTAGTGTGTGGGCGTGTAGTTCAG
TTGTGAGCACGCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCGGGC
TTGCGTACCCTTTCCTTGCTTAAAGTATGTGTGTTCTTTAGATCTTCTGA
TGGCTCTAGCATTTTTGTGACCACGGACCGAGTCTTTGCTAGATTTTGGG
ATTAGCAACTGACACGAGTGTAATGCGAAGAAAAACAACAACAACAACAA
CAACAACAACAACAACAACAACCGTCTATGCATGGCTTGCAGTAGACTAA
ATAGCTAGTCAAGTCTAGACTACAGATCTTCTGTCCGTGTAGTCTACGCG
AAGACATGCACTACGATCCAACGTGCTGTTGTACGAGGATTGACACTTGT
GCCACGCAGCACACCTTGCTTTCTGGTCGCAAAAGATCGAAAGTACTGGC
TATTCGTTTGCGACGCCGACGGACTCAAAAGCTGCAAGGGCCTTCGTTGT
GTGTGTTCGTGTGTTTGGATACGGACTGGTTAGATCTACCGGCAACAACA
GAGGGCACGCAGATGGGGCATATCTACACCTTGAAATGGTTGCATGTGCG
GGGACCCCTCGAACTCCAAAGAGTAGCTACCAAAGAGGGCTTCTCTTCTC
CCTACTCCCCTTGCGTGTCTAATACAAGAGATAAAACTTCTTCCCCTTCC
AAGTAAAGGACATATACGAACACACTAGTGTCAGTCCCTCGAGGGAGAGT
CCATTAGGAATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTC
TGCGGCGGAAGACAGAAAGAGGTCAAGAAAAGAGCTCGTGGCCCTGAGGA
CGCAATTTTGCTCGCTGACAGATCAGATGATCCAGCTATTGTCACTAGTG
GAAGATACCATGAAAGCAAGCAAAAAGGAGGAGCCAGCTGGCACCATGGA
GGGTGCCGCTGATCGCGGCGATGCNATCTGGCCCGTCAGGGCGACATAAC
GGCGAAGCAAGGGGCTTTGTCCTCCAAGAGGTGAGAGTAGCCGCTGCTCA
CAACCAAGATTATAGTAGTGCCATGGGAGTTGGTGGTGCTGCTGTTGGCT
TTGGATACGGAGCCACAACCCCAGCGATGGGGTACCAAAGTGTGCGGTAC
ACTTCTCCGTTCAGCGGGAAATGGAAATATTTCAACGAATGGCTAAATGA
TTTCCGCATGGCAGCTAATGGCGCAAACCTGTTGGAACAGTTTGAAGAGA
ACGGGAGCTTGGAGATCCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTG
TCACAACAGTATCGGAGCGATCAAGTAGAGCTCGCATTCCACGCGTGGAA
CTTCCTGTCTCACGCGTTGAAAGAAAATGATCGGAAAATCATGAAGCGGG
CAGAGACGCCCCAGGGAGCACTCCGTGAGCTCAAGACCATACACGACCCT
GAATCATCTGTACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAA
GATCTCTGGAGGTGAAAACCCCCAAAACGCCCTCAATGAGATGCTCCAAA
CCGCAAAGTCCTTAACCGAGAAAGGACTAACTGTCAACGAAACGTTCGTT
CTTCACCTCTCTATGCCCTTCCGGACGAGTATGCCATGACAAAGCATAAG
CTGCGACACGTGAAAGAGTTGACGCGGACCGGTGTGCTAAAGAAAGTAAT
GATCGAATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAATAG
GGGCGAAGGGCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN
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Coding sequence (CDS) from alignment at Scaffold_270:27070..30224+

>EsuBft1791_3a-0001 ID=EsuBft1791_3a-0001|Name=EsuBft1791_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=96bp|location=Sequence derived from alignment at Scaffold_270:27070..30224+ (Ectocarpus subulatus male Bft15b)
ATGACATTCGTTCGCAGCTGGACGGAGGAGACTGCTGTTGTGGACCCCGC
CAGGTATAAAGGTGCAGATGCGCGGGCCTCCAGGCCGTCGGTGTAG
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