EsuBft1791_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1791_2a-0001
Unique NameEsuBft1791_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_270contigScaffold_270:25191..26477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G148
ProteomeIdEsuBft1791_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR027806
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length66
Evalue3.44e-118
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_2aEsuBft1791_2aEctocarpus subulatus male Bft15bgeneScaffold_270 25191..26477 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_2a-0001-exonagat-exon-21821Ectocarpus subulatus male Bft15bexonScaffold_270 25191..25344 -
EsuBft1791_2a-0001-exonagat-exon-21822Ectocarpus subulatus male Bft15bexonScaffold_270 25684..26027 -
EsuBft1791_2a-0001-exonEsuBft1791_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_270 26110..26113 -
EsuBft1791_2a-0001-exonagat-exon-21820Ectocarpus subulatus male Bft15bexonScaffold_270 26311..26477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_2a-0001-cdsEsuBft1791_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_270 25191..25344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1791_2a-0001EsuBft1791_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_270 25191..26477 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1791_2a-0001 ID=EsuBft1791_2a-0001|Name=EsuBft1791_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=669bp|location=Sequence derived from alignment at Scaffold_270:25191..26477- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGGCAGCAGTCCTATAGCCTATACACCAGCATGTGGTTCGCTTC
CCACGTCGCGGTCATGTACACTCTGGGTCGCCTGGCCATCGATGATATCC
CGACCGGTGCTGCACGGAGGGACGAAGACAACTTCTTCAGCCCTCAGAAT
TGCGTGGAGTTTATGAGCAAGATCGTACTCATGCTGGAACTGCTCATGGT
GCCTGCCATCATTCGGACAGAGTGTGGCTTTGTGGTGGGCGGACGAGAGG
CTCTTTGCGTGCTGCTGTACCGACTTGCTTTCCCGTGCCGTTTGAAGGAC
ATGCGTCTGGTTTTCGGCCTGAGCGAGTCCTGTATCTGCGAGACTTTCAA
CTGGATGCTACACTTCATGGATTTCAAGTGGGGGTTCCTCCTCTCGCTGG
ACGTTCAACGGCTGGTACCAAAGCTTCGTACTTTTGCGGAGGCGGTTTAC
AACAAAGGTTGTCCCCTGACACACTGTTGGGCCTTCATCGACGGAACTGT
GCGCGGTATTGCAAGGCCTATACGCAACCAGCGCTTTTTCTACAACGGGT
ACAAGAGGAAGCACGCTATCAAGTTCCAAGGAGTCGTGACGCCAGACGGG
CTGTTTGTTGACCTGTACGGCGCAGAGGTTGGAACGAGGCACGACGGCTA
CTTGCTTGCGCAGTCTNNN
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protein sequence of EsuBft1791_2a-0001

>EsuBft1791_2 ID=EsuBft1791_2|Name=EsuBft1791_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MQWQQSYSLYTSMWFASHVAVMYTLGRLAIDDIPTGAARRDEDNFFSPQN
CVEFMSKIVLMLELLMVPAIIRTECGFVVGGREALCVLLYRLAFPCRLKD
MRLVFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVY
NKGCPLTHCWAFIDGTVRGIARPIRNQRFFYNGYKRKHAIKFQGVVTPDG
LFVDLYGAEVGTRHDGYLLAQSX
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mRNA from alignment at Scaffold_270:25191..26477-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1791_2a-0001 ID=EsuBft1791_2a-0001|Name=EsuBft1791_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1287bp|location=Sequence derived from alignment at Scaffold_270:25191..26477- (Ectocarpus subulatus male Bft15b)
ATGCAGTGGCAGCAGTCCTATAGCCTATACACCAGCATGTGGTTCGCTTC
CCACGTCGCGGTCATGTACACTCTGGGTCGCCTGGCCATCGATGATATCC
CGACCGGTGCTGCACGGAGGGACGAAGACAACTTCTTCAGCCCTCAGAAT
TGCGTGGAGTTTATGAGGTTTACGCGAGACCAGGCAATTCTATCTATTGA
GTGACGTTGGTAACGCTGGTGCTGTGTTGCTGCTGTGTGCCTCCTGTGTG
TGCCTGCTGCTGTCGGGAGTGGACAAATGAAGACAGATAGACCATGGCCG
CACACAAAAGACCGCGAGTTGTGCTGTGACGAGAGCGACACCCGAAGGCA
CGAAATGCACACAGCAAGGTTGAGTGTTTTGTCAACGAACGGCTACTGCA
TGTATTTTGACAAACACTATCATGCTGCTTCGGATCTTTTTGTGCGGCAG
ATCGTACTCATGCTGGAACTGCTCATGGTGCCTGCCATCATTCGGACAGA
GTGTGGCTTTGTGGTGGGCGGACGAGAGGCTCTTTGCGTGCTGCTGTACC
GACTTGCTTTCCCGTGCCGTTTGAAGGACATGCGTCTGGTTTTCGGCCTG
AGCGAGTCCTGTATCTGCGAGACTTTCAACTGGATGCTACACTTCATGGA
TTTCAAGTGGGGGTTCCTCCTCTCGCTGGACGTTCAACGGCTGGTACCAA
AGCTTCGTACTTTTGCGGAGGCGGTTTACAACAAAGGTTGTCCCCTGACA
CACTGTTGGGCCTTCATCGACGGAACTGTGCGCGGTATTGCAAGGTATGA
TCCGGAAGCCGTGCCCCCGTTGATGGGTGGTAGTTGTAAAAAAGCACTTG
GGTGAAACGGCGTCATGTATGTCCCGCTACATTTGTATGTCTACTTTGGC
GAACGGTAGCTAACCGCAACAACCACTCGTACGGGTTCACTTTTACGAAG
AAGGAGCAAGGTGGGTAACATCGACCCCTAGACTACAGGGAAGATTCCAG
AGGTCCTTTTGACAACACTACGCAAGAAAATGCACTCCGCTATATGCGGC
AAACCTCACGAAAACATTGTCGGATGCAAGAAAATAGATCGACCACCCCG
TGCGTCATGTTGTCGACGATGTTTGCGTCTCAGGCCTATACGCAACCAGC
GCTTTTTCTACAACGGGTACAAGAGGAAGCACGCTATCAAGTTCCAAGGA
GTCGTGACGCCAGACGGGCTGTTTGTTGACCTGTACGGCGCAGAGGTTGG
AACGAGGCACGACGGCTACTTGCTTGCGCAGTCTNNN
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Coding sequence (CDS) from alignment at Scaffold_270:25191..26477-

>EsuBft1791_2a-0001 ID=EsuBft1791_2a-0001|Name=EsuBft1791_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_270:25191..26477- (Ectocarpus subulatus male Bft15b)
ATGCAGTGGCAGCAGTCCTATAGCCTATACACCAGCATGTGGTTCGCTTC
CCACGTCGCGGTCATGTACACTCTGGGTCGCCTGGCCATCGATGATATCC
CGACCGGTGCTGCACGGAGGGACGAAGACAACTTCTTCAGCCCTCAGAAT
TGCGTGGAGTTTATGAGCAAGATCGTACTCATGCTGGAACTGCTCATGGT
GCCTGCCATCATTCGGACAGAGTGTGGCTTTGTGGTGGGCGGACGAGAGG
CTCTTTGCGTGCTGCTGTACCGACTTGCTTTCCCGTGCCGTTTGAAGGAC
ATGCGTCTGGTTTTCGGCCTGAGCGAGTCCTGTATCTGCGAGACTTTCAA
CTGGATGCTACACTTCATGGATTTCAAGTGGGGGTTCCTCCTCTCGCTGG
ACGTTCAACGGCTGGTACCAAAGCTTCGTACTTTTGCGGAGGCGGTTTAC
AACAAAGGTTGTCCCCTGACACACTGTTGGGCCTTCATCGACGGAACTGT
GCGCGGTATTGCAAGGCCTATACGCAACCAGCGCTTTTTCTACAACGGGT
ACAAGAGGAAGCACGCTATCAAGTTCCAAGGAGTCGTGACGCCAGACGGG
CTGTTTGTTGACCTGTACGGCGCAGAGGTTGGAACGAGGCACGACGGCTA
CTTGCTTGCGCAGTCTNNN
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