EsuBft1750_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1750_3a-0001
Unique NameEsuBft1750_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:629018..629971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1750_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length84
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_3aEsuBft1750_3aEctocarpus subulatus male Bft15bgeneScaffold_647 629018..629971 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_3a-0001-exonEsuBft1750_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 629018..629174 +
EsuBft1750_3a-0001-exonagat-exon-31394Ectocarpus subulatus male Bft15bexonScaffold_647 629283..629971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_3a-0001-cdsEsuBft1750_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 629018..629174 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_3a-0001-exonagat-three_prime_utr-6149Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 629477..629971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_3a-0001EsuBft1750_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 629018..629476 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1750_3a-0001 ID=EsuBft1750_3a-0001|Name=EsuBft1750_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=846bp|location=Sequence derived from alignment at Scaffold_647:629018..629971+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCGCCGGTGGAGCCTCGGCCGCCGCCGGAGAGGACGAGGGCGGA
GCCGGTCATGCCCAAGCCGAGGAGGGGGCGGGCGGCGGGCAGCATGGAGG
AGAGGCACCCGCGGAGGCCCGTGGTCAGAAGCGTGCTCTACATGAGGGCT
TTTGAAGGTGGGGCCAGGACCGGAGGAGGCTCTGTGGAAATTGAGGAGGA
GGCCACCGGTGGTGACCCAGCCTACGTCGGAGGGGGCGAGGTTGGGGTCG
GTCAAGCCCAAGCCGAGGAGGGGGTGGGCGGCGGGCAGCATGGAAGAGAG
GCTCCCGCGGAGGCCCGCGGCCAGAAGCGTGCTCTACCTGAGGTCTTTTG
AAGGTGTGTTTTTGTTTGTTTTGTAGCTTCTACAGGCTGCTGGCCTCGCT
CCGCGCTCCCGGATAAGCAGTCGGAAACGCAGTCTACCCCCGGACTTTTG
AAGGTGTGTATTTTTTCAATATGCAATTGCACAAATATCAATCGTAATAC
CCCACCGCCCCCAATATTTCCCGCCGCAGATATGGCCAGGCCGGGCTTTC
TTCACCCGTTCGTGCGGAGGAAGAGGGTTGTTTTGCGTCCCCCTTCCCCG
CGAGAACAAGGACGAGAGTGGCACGAGACCTTGGTGTCAACTGCGCCTGA
ACGCCAGCATCATATACTGCAGCGGGGAAGCACGAGCGGCTGGCTATTTT
TTTATGGGGCTTACGGCCGGCCTGCGTGTGGGGGGTTGAACGGATTTGGT
GTACACGGGCGCGAAACACATTGTTATTCTTAGTATTCAGCTTGACACGT
TAATTAGGGCATGTTTCGTTTTTTTTCAGGGGGTGTATATACACGG
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protein sequence of EsuBft1750_3a-0001

>EsuBft1750_3 ID=EsuBft1750_3|Name=EsuBft1750_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=116bp
MSPPVEPRPPPERTRAEPVMPKPRRGRAAGSMEERHPRRPVVRSVLYMRA
FEGGARTGGGSVEIEEEATGGDPAYVGGGEVGVGQAQAEEGVGGGQHGRE
APAEARGQKRALPEVF
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mRNA from alignment at Scaffold_647:629018..629971+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1750_3a-0001 ID=EsuBft1750_3a-0001|Name=EsuBft1750_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=954bp|location=Sequence derived from alignment at Scaffold_647:629018..629971+ (Ectocarpus subulatus male Bft15b)
ATGAGCCCGCCGGTGGAGCCTCGGCCGCCGCCGGAGAGGACGAGGGCGGA
GCCGGTCATGCCCAAGCCGAGGAGGGGGCGGGCGGCGGGCAGCATGGAGG
AGAGGCACCCGCGGAGGCCCGTGGTCAGAAGCGTGCTCTACATGAGGGCT
TTTGAAGGTGTGTTTGGTGTGTGCTGAAGTAGTCTGGCTTCGCTCCCCGC
TCCCGGATAAGCGGTCGGAAACGCAGACCTTTGACGGTGTGTATTTTTGC
GATATCTCATTGCAGGTGGGGCCAGGACCGGAGGAGGCTCTGTGGAAATT
GAGGAGGAGGCCACCGGTGGTGACCCAGCCTACGTCGGAGGGGGCGAGGT
TGGGGTCGGTCAAGCCCAAGCCGAGGAGGGGGTGGGCGGCGGGCAGCATG
GAAGAGAGGCTCCCGCGGAGGCCCGCGGCCAGAAGCGTGCTCTACCTGAG
GTCTTTTGAAGGTGTGTTTTTGTTTGTTTTGTAGCTTCTACAGGCTGCTG
GCCTCGCTCCGCGCTCCCGGATAAGCAGTCGGAAACGCAGTCTACCCCCG
GACTTTTGAAGGTGTGTATTTTTTCAATATGCAATTGCACAAATATCAAT
CGTAATACCCCACCGCCCCCAATATTTCCCGCCGCAGATATGGCCAGGCC
GGGCTTTCTTCACCCGTTCGTGCGGAGGAAGAGGGTTGTTTTGCGTCCCC
CTTCCCCGCGAGAACAAGGACGAGAGTGGCACGAGACCTTGGTGTCAACT
GCGCCTGAACGCCAGCATCATATACTGCAGCGGGGAAGCACGAGCGGCTG
GCTATTTTTTTATGGGGCTTACGGCCGGCCTGCGTGTGGGGGGTTGAACG
GATTTGGTGTACACGGGCGCGAAACACATTGTTATTCTTAGTATTCAGCT
TGACACGTTAATTAGGGCATGTTTCGTTTTTTTTCAGGGGGTGTATATAC
ACGG
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Coding sequence (CDS) from alignment at Scaffold_647:629018..629971+

>EsuBft1750_3a-0001 ID=EsuBft1750_3a-0001|Name=EsuBft1750_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=351bp|location=Sequence derived from alignment at Scaffold_647:629018..629971+ (Ectocarpus subulatus male Bft15b)
ATGAGCCCGCCGGTGGAGCCTCGGCCGCCGCCGGAGAGGACGAGGGCGGA
GCCGGTCATGCCCAAGCCGAGGAGGGGGCGGGCGGCGGGCAGCATGGAGG
AGAGGCACCCGCGGAGGCCCGTGGTCAGAAGCGTGCTCTACATGAGGGCT
TTTGAAGGTGGGGCCAGGACCGGAGGAGGCTCTGTGGAAATTGAGGAGGA
GGCCACCGGTGGTGACCCAGCCTACGTCGGAGGGGGCGAGGTTGGGGTCG
GTCAAGCCCAAGCCGAGGAGGGGGTGGGCGGCGGGCAGCATGGAAGAGAG
GCTCCCGCGGAGGCCCGCGGCCAGAAGCGTGCTCTACCTGAGGTCTTTTG
A
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