Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 449447.MAE_44080 |
| ProteomeId | EsuBft1743_4 |
| Protein domains | IPR011990 |
| Protein domains | PTHR19959 |
| Protein domains | SSF48452 |
| Protein domains | PF13374 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | nephrocystin-3 os:xenopus laevis gn:nphp3 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 1117|Cyanobacteria |
| Length | 2307 |
| Hectar predicted targeting category | other localisation |
| Evalue | 0.000222 |
| EggNOG OGs | COG0457@1|root,COG0457@2|Bacteria,1G1QI@1117|Cyanobacteria |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-19_004920.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | PFAM Tetratricopeptide repeat |
| COG category | F |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1743_4a-0001 ID=EsuBft1743_4a-0001|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2307bp|location=Sequence derived from alignment at Scaffold_70:271163..274661+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCCGATGTTTGTATGTACATGTCCACCGCCCCCTGTCCGACGTATC
ACCAACCCCTACCCGAAAACAAACAAACAGCGATGCTGGTGCGGAGGCCG
CGCAACGCCATGCGCTAGCCCTGAGGTGTCGAGAGTGGGAAGACCGTGAC
GGAGGCGTGTTTGCCGGGGGGGGACGGCAAGAGGGTGACGCGGGGCGTGG
TGCTGGTTGTGATTCGGGCTTGTTGGACCCGTCGAGTGCTGTCGTCGCGG
CGAAGAGGGCGGCGGTGCCATGCCTGCGTAACCTGGCCAGCTTCGTGTCC
AACCAGGGGAGACATGTGGACGCCGAAGTGGTCCTGCGCACTGTGCTCAA
CATCCTCCGAGACTACAAGCAACAGCTCAGCAGCCAGCATCATGACGGCA
AGGGCAAGCGCGAGGCCGACGCACCTCAACTGGACGGCGGGGGAGGCTTC
GGCACCCACTCGGCCTCCTTCACGCCGTCGTCGTTTGAAGAGAGGCGATC
GGACGAAGCACGAGCGGACGTTGGCTCCCCGGCGCCGTCGCCAACGCCCG
AAACCCACGACGGCAGCCCCGCAGCACATCCGACAACAGCACCCCCTCCG
TTGTCCGCGGTGCCCGAGGTGGGCATCGCTGGGCGGTACGAAAGCCTTGG
TAGGGATGGCTCCACGGCCAACCCCACCACCGGCGGTGACGCATACGAGA
GCGGGAACACCCCGGCGGGTTCGCGTCCAAGCGCCGAGACCGCGGGCGGC
GGCGGGGGGGGGGGGGGGGTCGAAGGCGACGATCTAAGGAGCCAAGCTGC
ACAGGCTACGGCCGCGCTGGCGGAGGAAACGGTGGCGTCGGCGATGGCGG
CGGCCACGAGAGCGGTCGCCGTGATGGGAGAGACGGCGGCTACGCTAGAG
CCTTCCCTCGTCGTCAACCACAACCGCGCGACGAGAAGCGACGCCTCCCC
GGCCCCCCCGCCACCGTCCCCCGTCCCCCTGATGAAGCAGGCCAGCGCCG
GCCCGACGGCAGGGAGGCGGGGCGGCAGGCTGGAGGAGAGCAGGCTGCCG
GGCATGAAATTCGCCGGGGGTGAGAGCGGTGACGACGAGCGGGGCTTGGA
GGATGTCGAAGGAGGGGAGGACGAGGACCCGGATCAGATGGCGGCGGTGA
CAAGACACCGCCTTGCAGTCGTCATTCACGCGCAGGGTCGAGCGAAAGAG
GCCGAGCAGCTCCTGGAGGATAGCCTCCGCGTCCTCAAGCGGAGAAAGCC
GCCTCAGGCGGTGTGTGTCGCCCAAGCGATGCACGACCTGGCAGGGATCG
TCCGCCCGGCAGACCCCGCCCGGGCGTGCACCCTCTACCGCCAGGCCCTC
AAGACCCTCGAGGGGGCCTGCGGCGTCGACCACTTCCTGACGACCCCTAC
GCTCGCCAAGCTGGGGGCTCTTCTGGGGGAGAGTCTGGTGGCCGCGGCGG
ACATCCCCATAACGCCCGCCCAGCCGGCGGGCCCCGGCTGCGCCGGCATC
CAGCGGAGCGCGGGGCTTGCGGAGGCCGTGTGCGCCAGCGCCGGGTGCGG
CGTTGAAGACAGCTCGGCGGTGGCGGCGGCGGCCGGGGTCGACTGGGACC
CCAAGAAGGCGGAGGAGATGATCAAGCGGGCGGCGTTCATCCAGGGGAGG
TTCCTCGGGCTTCGGCACCCGACGGTTGCGTCGAGCATGCGCGCGATGGC
GGAACTCTACCGCAGGCAGGGGAGGCTGGCGGAGGCGGAGCCGCTCTTCA
GGAGGGCGATCGGGATCTGGGAGGTGTCGGGGGGCGAGGGGGGGATGGAC
TCCGACGCCATCGCCGCGCTGCACGGAACCGCGCACTGCGTGCTGGCCGG
CGCGGGGGCGGACTGGCTCGGCAGGTTCGAGGAGGCGTTTGCCCTGGTCG
ATCAGGCCTACCGTATCGCCTCGTCGCACCCCGGGAAGTGAGTGTTTTTT
TTCTTCTTTTTGGCCGCTGTTTGCAATATCTGGTGTCAGCACTCTAGTCT
AGCTTCGATGCGAAGTTGCTTTTTGTTTGTGCTGTTGTTTGCAGTACACG
TCCGGTGTCAGCGCCCTCGGCTAACTTCGCTGCGAGGTGATCGTCGAGTG
AGTGCTCTGGTAGGCCGCATTTTTGTCTGATAGCGGCTGTCTCGGGATTT
TTTTCGGCGCGATGTATATCGTCGACGGAAGCGTGTTGTTCTGCATTATT
TATCCGGTGGCATTGGCCTCGGCCAGTCGTGTTGCTGCGGTGGGGGTTAA
TCGTTCTCCTGGAGTAGGTACAAAGTCGTCGCCACGCCTATGTCCCTCAT
GTCGACA back to topprotein sequence of EsuBft1743_4a-0001 >EsuBft1743_4 ID=EsuBft1743_4|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=646bp
MFRCLYVHVHRPLSDVSPTPTRKQTNSDAGAEAAQRHALALRCREWEDRD
GGVFAGGGRQEGDAGRGAGCDSGLLDPSSAVVAAKRAAVPCLRNLASFVS
NQGRHVDAEVVLRTVLNILRDYKQQLSSQHHDGKGKREADAPQLDGGGGF
GTHSASFTPSSFEERRSDEARADVGSPAPSPTPETHDGSPAAHPTTAPPP
LSAVPEVGIAGRYESLGRDGSTANPTTGGDAYESGNTPAGSRPSAETAGG
GGGGGGVEGDDLRSQAAQATAALAEETVASAMAAATRAVAVMGETAATLE
PSLVVNHNRATRSDASPAPPPPSPVPLMKQASAGPTAGRRGGRLEESRLP
GMKFAGGESGDDERGLEDVEGGEDEDPDQMAAVTRHRLAVVIHAQGRAKE
AEQLLEDSLRVLKRRKPPQAVCVAQAMHDLAGIVRPADPARACTLYRQAL
KTLEGACGVDHFLTTPTLAKLGALLGESLVAAADIPITPAQPAGPGCAGI
QRSAGLAEAVCASAGCGVEDSSAVAAAAGVDWDPKKAEEMIKRAAFIQGR
FLGLRHPTVASSMRAMAELYRRQGRLAEAEPLFRRAIGIWEVSGGEGGMD
SDAIAALHGTAHCVLAGAGADWLGRFEEAFALVDQAYRIASSHPGK back to topmRNA from alignment at Scaffold_70:271163..274661+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1743_4a-0001 ID=EsuBft1743_4a-0001|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3499bp|location=Sequence derived from alignment at Scaffold_70:271163..274661+ (Ectocarpus subulatus male Bft15b)
ATGTTCCGATGTTTGTATGTACATGTCCACCGCCCCCTGTCCGACGTATC
ACCAACCCCTACCCGAAAACAAACAAACAGCGATGCTGGTGCGGAGGCCG
CGCAACGCCATGCGCTAGCCCTGAGGTGTCGAGAGTGGGAAGACCGTGAC
GGAGGCGTGTTTGCCGGGGGGGGACGGCAAGAGGGTGACGCGGGGCGTGG
TGCTGGTTGTGATTCGGGCTTGTTGGACCCGTCGAGTGCTGTCGTCGCGG
CGAAGAGGGCGGCGGTGCCATGCCTGCGTAACCTGGCCAGCTTCGTGTCC
AACCAGGGGAGACATGTGGACGCCGAAGTGGTCCTGGTGAGTAAGGGGGG
TGTCGACACCAAAAAAATGTTTTATGGCGGGTTAGATATTGGCGATCATA
TAATGTTTTTGTTCCAAGCAGAACGGGCAGTGTTGCGTCTCGCTGGCTGT
GGAGATGGTTGTGTAAAATTGGGCCCGCAAGCTGTTCGTAGACATGGGGC
CACCAACTTTCACAAAGTGTTATCTTGAGGGTGTGCGTCTCTCTCGCGCC
CCTCCCCTGCCCCCCCCCTACTGTTGTGTCCCACCAGCGCACTGTGCTCA
ACATCCTCCGAGACTACAAGCAACAGCTCAGCAGCCAGCATCATGACGGC
AAGGGCAAGCGCGAGGCCGACGCACCTCAACTGGACGGCGGGGGAGGCTT
CGGCACCCACTCGGCCTCCTTCACGCCGTCGTCGTTTGAAGAGAGGCGAT
CGGACGAAGCACGAGCGGACGTTGGCTCCCCGGCGCCGTCGCCAACGCCC
GAAACCCACGACGGCAGCCCCGCAGCACATCCGACAACAGCACCCCCTCC
GTTGTCCGCGGTGCCCGAGGTGGGCATCGCTGGGCGGTACGAAAGCCTTG
GTAGGGATGGCTCCACGGCCAACCCCACCACCGGCGGTGACGCATACGAG
AGCGGGAACACCCCGGCGGGTTCGCGTCCAAGCGCCGAGACCGCGGGCGG
CGGCGGGGGGGGGGGGGGGGTCGAAGGCGACGATCTAAGGAGCCAAGCTG
CACAGGCTACGGCCGCGCTGGCGGAGGAAACGGTGGCGTCGGCGATGGCG
GCGGCCACGAGAGCGGTCGCCGTGATGGGAGAGACGGCGGCTACGCTAGA
GCCTTCCCTCGTCGTCAACCACAACCGCGCGACGAGAAGCGACGCCTCCC
CGGCCCCCCCGCCACCGTCCCCCGTCCCCCTGATGAAGCAGGCCAGCGCC
GGCCCGACGGCAGGGAGGCGGGGCGGCAGGCTGGAGGAGAGCAGGCTGCC
GGGCATGAAATTCGCCGGGGGTGAGAGCGGTGACGACGAGCGGGGCTTGG
AGGATGTCGAAGGAGGGGAGGACGAGGACCCGGATCAGATGGCGGCGGTG
ACAAGACACCGCCTTGCAGTCGTCATTCACGCGCAGGTGGTGTATGTGTT
TTGTGCTTCTCTGTTGTTGTTAATTGTTACTGGCACTGCCCGCCCGCCCT
AACCGGCTGACCAATTTGTGGTGTGTGTGTGTCTGTCACTTGCATCGCCC
GCACTAGCCGGCTGACCAGTGAAAAGGCAGTCTCANNNNNNNNNNNNNNN
NNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAAGGACACCGAGAAGCTG
AGGTAACACGACGAAAAAAAAAGGCGTTGCCGCTCGTGAAACACCTGTAA
CGGCGGCCGCGGTGCCTCGAAGTGCGTGCGCTGCTGCTGCGGCGCCTCTT
GCGCTACACCTATCCGCGCCTCCCTCGCTCCCTCGGCCCTTTCCGTCATA
TGTCCTCACGCCTGACGATAACGACATGTCGCTTTCTTGTTGGCCGGCAG
GGTCGAGCGAAAGAGGCCGAGCAGCTCCTGGAGGATAGCCTCCGCGTCCT
CAAGCGGAGAAAGCCGCCTCAGGTGTGGAGACCTTTTTTATTTTTATTGC
CCAGCGAGAGAGCGCCAGAACTATACCAGAAAGACAAGCGCGATCGACGA
CGGCAGTAGTTGGCCGTTTGGTACGTCTGTCCCGGATGATGTTGATATAG
GTGTGGGTACGCGGAGGCAGTGATCTAGGACACCACGAAGGCCCATGTGT
TAGAGAAACACTCACTTCCCTTGCTCCAAAAAAGAAAATGCCGCCCGCAT
GTGTAGAGTCCTGTCACCCATCTGCCCTTCGTTTCTCTTGTCGAGTTTAC
GGCGGACCCCCCCCCTCCCCCCCCGCGAGGCCAATGGTCTCACAGCAAAG
GCATGCAAAACATGAGTAGGTCCCCATCGAGCTCGCCACCGCTGTTTCTT
TCCAAAACCTGCCCGCATGGCCACCAGCTAAGGCATGCATCACACATGAG
CACACCCCCTGCCCGACGCCGTTTCTTTCTTTCAAAAAACGCCCTTCAGG
CGGTGTGTGTCGCCCAAGCGATGCACGACCTGGCAGGGATCGTCCGCCCG
GCAGACCCCGCCCGGGCGTGCACCCTCTACCGCCAGGCCCTCAAGACCCT
CGAGGGGGCCTGCGGCGTCGACCACTTCCTGACGACCCCTACGCTCGCCA
AGCTGGGGGCTCTTCTGGGGGAGAGTCTGGTGGCCGCGGCGGACATCCCC
ATAACGCCCGCCCAGCCGGCGGGCCCCGGCTGCGCCGGCATCCAGCGGAG
CGCGGGGCTTGCGGAGGCCGTGTGCGCCAGCGCCGGGTGCGGCGTTGAAG
ACAGCTCGGCGGTGGCGGCGGCGGCCGGGGTCGACTGGGACCCCAAGAAG
GCGGAGGAGATGATCAAGCGGGCGGCGTTCATCCAGGGGAGGTTCCTCGG
GCTTCGGCACCCGACGGTTGCGTCGAGCATGCGCGCGATGGCGGAACTCT
ACCGCAGGCAGGGGAGGCTGGCGGAGGCGGAGCCGCTCTTCAGGAGGGCG
ATCGGGATCTGGGAGGTGTCGGGGGGCGAGGGGGGGATGGACTCCGACGC
CATCGCCGCGCTGCACGGAACCGCGCACTGCGTGCTGGCCGGCGCGGGGG
CGGACTGGCTCGGCAGGTTCGAGGAGGCGTTTGCCCTGGTCGATCAGGCC
TACCGTATCGCCTCGTCGCACCCCGGGAAGTGAGTGTTTTTTTTCTTCTT
TTTGGCCGCTGTTTGCAATATCTGGTGTCAGCACTCTAGTCTAGCTTCGA
TGCGAAGTTGCTTTTTGTTTGTGCTGTTGTTTGCAGTACACGTCCGGTGT
CAGCGCCCTCGGCTAACTTCGCTGCGAGGTGATCGTCGAGTGAGTGCTCT
GGTAGGCCGCATTTTTGTCTGATAGCGGCTGTCTCGGGATTTTTTTCGGC
GCGATGTATATCGTCGACGGAAGCGTGTTGTTCTGCATTATTTATCCGGT
GGCATTGGCCTCGGCCAGTCGTGTTGCTGCGGTGGGGGTTAATCGTTCTC
CTGGAGTAGGTACAAAGTCGTCGCCACGCCTATGTCCCTCATGTCGACA back to topCoding sequence (CDS) from alignment at Scaffold_70:271163..274661+ >EsuBft1743_4a-0001 ID=EsuBft1743_4a-0001|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1941bp|location=Sequence derived from alignment at Scaffold_70:271163..274661+ (Ectocarpus subulatus male Bft15b)
ATGTTCCGATGTTTGTATGTACATGTCCACCGCCCCCTGTCCGACGTATC
ACCAACCCCTACCCGAAAACAAACAAACAGCGATGCTGGTGCGGAGGCCG
CGCAACGCCATGCGCTAGCCCTGAGGTGTCGAGAGTGGGAAGACCGTGAC
GGAGGCGTGTTTGCCGGGGGGGGACGGCAAGAGGGTGACGCGGGGCGTGG
TGCTGGTTGTGATTCGGGCTTGTTGGACCCGTCGAGTGCTGTCGTCGCGG
CGAAGAGGGCGGCGGTGCCATGCCTGCGTAACCTGGCCAGCTTCGTGTCC
AACCAGGGGAGACATGTGGACGCCGAAGTGGTCCTGCGCACTGTGCTCAA
CATCCTCCGAGACTACAAGCAACAGCTCAGCAGCCAGCATCATGACGGCA
AGGGCAAGCGCGAGGCCGACGCACCTCAACTGGACGGCGGGGGAGGCTTC
GGCACCCACTCGGCCTCCTTCACGCCGTCGTCGTTTGAAGAGAGGCGATC
GGACGAAGCACGAGCGGACGTTGGCTCCCCGGCGCCGTCGCCAACGCCCG
AAACCCACGACGGCAGCCCCGCAGCACATCCGACAACAGCACCCCCTCCG
TTGTCCGCGGTGCCCGAGGTGGGCATCGCTGGGCGGTACGAAAGCCTTGG
TAGGGATGGCTCCACGGCCAACCCCACCACCGGCGGTGACGCATACGAGA
GCGGGAACACCCCGGCGGGTTCGCGTCCAAGCGCCGAGACCGCGGGCGGC
GGCGGGGGGGGGGGGGGGGTCGAAGGCGACGATCTAAGGAGCCAAGCTGC
ACAGGCTACGGCCGCGCTGGCGGAGGAAACGGTGGCGTCGGCGATGGCGG
CGGCCACGAGAGCGGTCGCCGTGATGGGAGAGACGGCGGCTACGCTAGAG
CCTTCCCTCGTCGTCAACCACAACCGCGCGACGAGAAGCGACGCCTCCCC
GGCCCCCCCGCCACCGTCCCCCGTCCCCCTGATGAAGCAGGCCAGCGCCG
GCCCGACGGCAGGGAGGCGGGGCGGCAGGCTGGAGGAGAGCAGGCTGCCG
GGCATGAAATTCGCCGGGGGTGAGAGCGGTGACGACGAGCGGGGCTTGGA
GGATGTCGAAGGAGGGGAGGACGAGGACCCGGATCAGATGGCGGCGGTGA
CAAGACACCGCCTTGCAGTCGTCATTCACGCGCAGGGTCGAGCGAAAGAG
GCCGAGCAGCTCCTGGAGGATAGCCTCCGCGTCCTCAAGCGGAGAAAGCC
GCCTCAGGCGGTGTGTGTCGCCCAAGCGATGCACGACCTGGCAGGGATCG
TCCGCCCGGCAGACCCCGCCCGGGCGTGCACCCTCTACCGCCAGGCCCTC
AAGACCCTCGAGGGGGCCTGCGGCGTCGACCACTTCCTGACGACCCCTAC
GCTCGCCAAGCTGGGGGCTCTTCTGGGGGAGAGTCTGGTGGCCGCGGCGG
ACATCCCCATAACGCCCGCCCAGCCGGCGGGCCCCGGCTGCGCCGGCATC
CAGCGGAGCGCGGGGCTTGCGGAGGCCGTGTGCGCCAGCGCCGGGTGCGG
CGTTGAAGACAGCTCGGCGGTGGCGGCGGCGGCCGGGGTCGACTGGGACC
CCAAGAAGGCGGAGGAGATGATCAAGCGGGCGGCGTTCATCCAGGGGAGG
TTCCTCGGGCTTCGGCACCCGACGGTTGCGTCGAGCATGCGCGCGATGGC
GGAACTCTACCGCAGGCAGGGGAGGCTGGCGGAGGCGGAGCCGCTCTTCA
GGAGGGCGATCGGGATCTGGGAGGTGTCGGGGGGCGAGGGGGGGATGGAC
TCCGACGCCATCGCCGCGCTGCACGGAACCGCGCACTGCGTGCTGGCCGG
CGCGGGGGCGGACTGGCTCGGCAGGTTCGAGGAGGCGTTTGCCCTGGTCG
ATCAGGCCTACCGTATCGCCTCGTCGCACCCCGGGAAGTGA back to top
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