EsuBft1743_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1743_4a-0001
Unique Name	EsuBft1743_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:271163..274661 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	449447.MAE_44080
ProteomeId	EsuBft1743_4
Protein domains	IPR011990
Protein domains	PTHR19959
Protein domains	SSF48452
Protein domains	PF13374
Owner	apollo_admin@sb-roscoff.fr
Note	nephrocystin-3 os:xenopus laevis gn:nphp3 pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	1117\|Cyanobacteria
Length	2307
Hectar predicted targeting category	other localisation
Evalue	0.000222
EggNOG OGs	COG0457@1\|root,COG0457@2\|Bacteria,1G1QI@1117\|Cyanobacteria
Ec32 ortholog description	Tetratricopeptide-like helical domain
Ec32 ortholog	Ec-19_004920.1
Date last modified	2016-06-13
Date creation	2016-06-13
Description	PFAM Tetratricopeptide repeat
COG category	F

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_4a	EsuBft1743_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 271163..274661 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_4a-0001	EsuBft1743_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 271163..274295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_4a-0001-exon	agat-exon-106455	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 271163..271498 +
EsuBft1743_4a-0001-exon	EsuBft1743_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 271750..272598 +
EsuBft1743_4a-0001-exon	agat-exon-106457	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 273063..273134 +
EsuBft1743_4a-0001-exon	agat-exon-106456	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 273612..274661 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_4a-0001-cds	EsuBft1743_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 271163..271498 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1743_4a-0001-exon	agat-three_prime_utr-6108	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_70 274296..274661 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:271163..274661+
coding sequence from alignment at Scaffold_70:271163..274661+

spliced messenger RNA

>EsuBft1743_4a-0001 ID=EsuBft1743_4a-0001|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2307bp|location=Sequence derived from alignment at Scaffold_70:271163..274661+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGATGTTTGTATGTACATGTCCACCGCCCCCTGTCCGACGTATC
ACCAACCCCTACCCGAAAACAAACAAACAGCGATGCTGGTGCGGAGGCCG
CGCAACGCCATGCGCTAGCCCTGAGGTGTCGAGAGTGGGAAGACCGTGAC
GGAGGCGTGTTTGCCGGGGGGGGACGGCAAGAGGGTGACGCGGGGCGTGG
TGCTGGTTGTGATTCGGGCTTGTTGGACCCGTCGAGTGCTGTCGTCGCGG
CGAAGAGGGCGGCGGTGCCATGCCTGCGTAACCTGGCCAGCTTCGTGTCC
AACCAGGGGAGACATGTGGACGCCGAAGTGGTCCTGCGCACTGTGCTCAA
CATCCTCCGAGACTACAAGCAACAGCTCAGCAGCCAGCATCATGACGGCA
AGGGCAAGCGCGAGGCCGACGCACCTCAACTGGACGGCGGGGGAGGCTTC
GGCACCCACTCGGCCTCCTTCACGCCGTCGTCGTTTGAAGAGAGGCGATC
GGACGAAGCACGAGCGGACGTTGGCTCCCCGGCGCCGTCGCCAACGCCCG
AAACCCACGACGGCAGCCCCGCAGCACATCCGACAACAGCACCCCCTCCG
TTGTCCGCGGTGCCCGAGGTGGGCATCGCTGGGCGGTACGAAAGCCTTGG
TAGGGATGGCTCCACGGCCAACCCCACCACCGGCGGTGACGCATACGAGA
GCGGGAACACCCCGGCGGGTTCGCGTCCAAGCGCCGAGACCGCGGGCGGC
GGCGGGGGGGGGGGGGGGGTCGAAGGCGACGATCTAAGGAGCCAAGCTGC
ACAGGCTACGGCCGCGCTGGCGGAGGAAACGGTGGCGTCGGCGATGGCGG
CGGCCACGAGAGCGGTCGCCGTGATGGGAGAGACGGCGGCTACGCTAGAG
CCTTCCCTCGTCGTCAACCACAACCGCGCGACGAGAAGCGACGCCTCCCC
GGCCCCCCCGCCACCGTCCCCCGTCCCCCTGATGAAGCAGGCCAGCGCCG
GCCCGACGGCAGGGAGGCGGGGCGGCAGGCTGGAGGAGAGCAGGCTGCCG
GGCATGAAATTCGCCGGGGGTGAGAGCGGTGACGACGAGCGGGGCTTGGA
GGATGTCGAAGGAGGGGAGGACGAGGACCCGGATCAGATGGCGGCGGTGA
CAAGACACCGCCTTGCAGTCGTCATTCACGCGCAGGGTCGAGCGAAAGAG
GCCGAGCAGCTCCTGGAGGATAGCCTCCGCGTCCTCAAGCGGAGAAAGCC
GCCTCAGGCGGTGTGTGTCGCCCAAGCGATGCACGACCTGGCAGGGATCG
TCCGCCCGGCAGACCCCGCCCGGGCGTGCACCCTCTACCGCCAGGCCCTC
AAGACCCTCGAGGGGGCCTGCGGCGTCGACCACTTCCTGACGACCCCTAC
GCTCGCCAAGCTGGGGGCTCTTCTGGGGGAGAGTCTGGTGGCCGCGGCGG
ACATCCCCATAACGCCCGCCCAGCCGGCGGGCCCCGGCTGCGCCGGCATC
CAGCGGAGCGCGGGGCTTGCGGAGGCCGTGTGCGCCAGCGCCGGGTGCGG
CGTTGAAGACAGCTCGGCGGTGGCGGCGGCGGCCGGGGTCGACTGGGACC
CCAAGAAGGCGGAGGAGATGATCAAGCGGGCGGCGTTCATCCAGGGGAGG
TTCCTCGGGCTTCGGCACCCGACGGTTGCGTCGAGCATGCGCGCGATGGC
GGAACTCTACCGCAGGCAGGGGAGGCTGGCGGAGGCGGAGCCGCTCTTCA
GGAGGGCGATCGGGATCTGGGAGGTGTCGGGGGGCGAGGGGGGGATGGAC
TCCGACGCCATCGCCGCGCTGCACGGAACCGCGCACTGCGTGCTGGCCGG
CGCGGGGGCGGACTGGCTCGGCAGGTTCGAGGAGGCGTTTGCCCTGGTCG
ATCAGGCCTACCGTATCGCCTCGTCGCACCCCGGGAAGTGAGTGTTTTTT
TTCTTCTTTTTGGCCGCTGTTTGCAATATCTGGTGTCAGCACTCTAGTCT
AGCTTCGATGCGAAGTTGCTTTTTGTTTGTGCTGTTGTTTGCAGTACACG
TCCGGTGTCAGCGCCCTCGGCTAACTTCGCTGCGAGGTGATCGTCGAGTG
AGTGCTCTGGTAGGCCGCATTTTTGTCTGATAGCGGCTGTCTCGGGATTT
TTTTCGGCGCGATGTATATCGTCGACGGAAGCGTGTTGTTCTGCATTATT
TATCCGGTGGCATTGGCCTCGGCCAGTCGTGTTGCTGCGGTGGGGGTTAA
TCGTTCTCCTGGAGTAGGTACAAAGTCGTCGCCACGCCTATGTCCCTCAT
GTCGACA

protein sequence of EsuBft1743_4a-0001

>EsuBft1743_4 ID=EsuBft1743_4|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=646bp
MFRCLYVHVHRPLSDVSPTPTRKQTNSDAGAEAAQRHALALRCREWEDRD
GGVFAGGGRQEGDAGRGAGCDSGLLDPSSAVVAAKRAAVPCLRNLASFVS
NQGRHVDAEVVLRTVLNILRDYKQQLSSQHHDGKGKREADAPQLDGGGGF
GTHSASFTPSSFEERRSDEARADVGSPAPSPTPETHDGSPAAHPTTAPPP
LSAVPEVGIAGRYESLGRDGSTANPTTGGDAYESGNTPAGSRPSAETAGG
GGGGGGVEGDDLRSQAAQATAALAEETVASAMAAATRAVAVMGETAATLE
PSLVVNHNRATRSDASPAPPPPSPVPLMKQASAGPTAGRRGGRLEESRLP
GMKFAGGESGDDERGLEDVEGGEDEDPDQMAAVTRHRLAVVIHAQGRAKE
AEQLLEDSLRVLKRRKPPQAVCVAQAMHDLAGIVRPADPARACTLYRQAL
KTLEGACGVDHFLTTPTLAKLGALLGESLVAAADIPITPAQPAGPGCAGI
QRSAGLAEAVCASAGCGVEDSSAVAAAAGVDWDPKKAEEMIKRAAFIQGR
FLGLRHPTVASSMRAMAELYRRQGRLAEAEPLFRRAIGIWEVSGGEGGMD
SDAIAALHGTAHCVLAGAGADWLGRFEEAFALVDQAYRIASSHPGK

mRNA from alignment at Scaffold_70:271163..274661+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1743_4a-0001 ID=EsuBft1743_4a-0001|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3499bp|location=Sequence derived from alignment at Scaffold_70:271163..274661+ (Ectocarpus subulatus male Bft15b)
ATGTTCCGATGTTTGTATGTACATGTCCACCGCCCCCTGTCCGACGTATC
ACCAACCCCTACCCGAAAACAAACAAACAGCGATGCTGGTGCGGAGGCCG
CGCAACGCCATGCGCTAGCCCTGAGGTGTCGAGAGTGGGAAGACCGTGAC
GGAGGCGTGTTTGCCGGGGGGGGACGGCAAGAGGGTGACGCGGGGCGTGG
TGCTGGTTGTGATTCGGGCTTGTTGGACCCGTCGAGTGCTGTCGTCGCGG
CGAAGAGGGCGGCGGTGCCATGCCTGCGTAACCTGGCCAGCTTCGTGTCC
AACCAGGGGAGACATGTGGACGCCGAAGTGGTCCTGGTGAGTAAGGGGGG
TGTCGACACCAAAAAAATGTTTTATGGCGGGTTAGATATTGGCGATCATA
TAATGTTTTTGTTCCAAGCAGAACGGGCAGTGTTGCGTCTCGCTGGCTGT
GGAGATGGTTGTGTAAAATTGGGCCCGCAAGCTGTTCGTAGACATGGGGC
CACCAACTTTCACAAAGTGTTATCTTGAGGGTGTGCGTCTCTCTCGCGCC
CCTCCCCTGCCCCCCCCCTACTGTTGTGTCCCACCAGCGCACTGTGCTCA
ACATCCTCCGAGACTACAAGCAACAGCTCAGCAGCCAGCATCATGACGGC
AAGGGCAAGCGCGAGGCCGACGCACCTCAACTGGACGGCGGGGGAGGCTT
CGGCACCCACTCGGCCTCCTTCACGCCGTCGTCGTTTGAAGAGAGGCGAT
CGGACGAAGCACGAGCGGACGTTGGCTCCCCGGCGCCGTCGCCAACGCCC
GAAACCCACGACGGCAGCCCCGCAGCACATCCGACAACAGCACCCCCTCC
GTTGTCCGCGGTGCCCGAGGTGGGCATCGCTGGGCGGTACGAAAGCCTTG
GTAGGGATGGCTCCACGGCCAACCCCACCACCGGCGGTGACGCATACGAG
AGCGGGAACACCCCGGCGGGTTCGCGTCCAAGCGCCGAGACCGCGGGCGG
CGGCGGGGGGGGGGGGGGGGTCGAAGGCGACGATCTAAGGAGCCAAGCTG
CACAGGCTACGGCCGCGCTGGCGGAGGAAACGGTGGCGTCGGCGATGGCG
GCGGCCACGAGAGCGGTCGCCGTGATGGGAGAGACGGCGGCTACGCTAGA
GCCTTCCCTCGTCGTCAACCACAACCGCGCGACGAGAAGCGACGCCTCCC
CGGCCCCCCCGCCACCGTCCCCCGTCCCCCTGATGAAGCAGGCCAGCGCC
GGCCCGACGGCAGGGAGGCGGGGCGGCAGGCTGGAGGAGAGCAGGCTGCC
GGGCATGAAATTCGCCGGGGGTGAGAGCGGTGACGACGAGCGGGGCTTGG
AGGATGTCGAAGGAGGGGAGGACGAGGACCCGGATCAGATGGCGGCGGTG
ACAAGACACCGCCTTGCAGTCGTCATTCACGCGCAGGTGGTGTATGTGTT
TTGTGCTTCTCTGTTGTTGTTAATTGTTACTGGCACTGCCCGCCCGCCCT
AACCGGCTGACCAATTTGTGGTGTGTGTGTGTCTGTCACTTGCATCGCCC
GCACTAGCCGGCTGACCAGTGAAAAGGCAGTCTCANNNNNNNNNNNNNNN
NNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAAGGACACCGAGAAGCTG
AGGTAACACGACGAAAAAAAAAGGCGTTGCCGCTCGTGAAACACCTGTAA
CGGCGGCCGCGGTGCCTCGAAGTGCGTGCGCTGCTGCTGCGGCGCCTCTT
GCGCTACACCTATCCGCGCCTCCCTCGCTCCCTCGGCCCTTTCCGTCATA
TGTCCTCACGCCTGACGATAACGACATGTCGCTTTCTTGTTGGCCGGCAG
GGTCGAGCGAAAGAGGCCGAGCAGCTCCTGGAGGATAGCCTCCGCGTCCT
CAAGCGGAGAAAGCCGCCTCAGGTGTGGAGACCTTTTTTATTTTTATTGC
CCAGCGAGAGAGCGCCAGAACTATACCAGAAAGACAAGCGCGATCGACGA
CGGCAGTAGTTGGCCGTTTGGTACGTCTGTCCCGGATGATGTTGATATAG
GTGTGGGTACGCGGAGGCAGTGATCTAGGACACCACGAAGGCCCATGTGT
TAGAGAAACACTCACTTCCCTTGCTCCAAAAAAGAAAATGCCGCCCGCAT
GTGTAGAGTCCTGTCACCCATCTGCCCTTCGTTTCTCTTGTCGAGTTTAC
GGCGGACCCCCCCCCTCCCCCCCCGCGAGGCCAATGGTCTCACAGCAAAG
GCATGCAAAACATGAGTAGGTCCCCATCGAGCTCGCCACCGCTGTTTCTT
TCCAAAACCTGCCCGCATGGCCACCAGCTAAGGCATGCATCACACATGAG
CACACCCCCTGCCCGACGCCGTTTCTTTCTTTCAAAAAACGCCCTTCAGG
CGGTGTGTGTCGCCCAAGCGATGCACGACCTGGCAGGGATCGTCCGCCCG
GCAGACCCCGCCCGGGCGTGCACCCTCTACCGCCAGGCCCTCAAGACCCT
CGAGGGGGCCTGCGGCGTCGACCACTTCCTGACGACCCCTACGCTCGCCA
AGCTGGGGGCTCTTCTGGGGGAGAGTCTGGTGGCCGCGGCGGACATCCCC
ATAACGCCCGCCCAGCCGGCGGGCCCCGGCTGCGCCGGCATCCAGCGGAG
CGCGGGGCTTGCGGAGGCCGTGTGCGCCAGCGCCGGGTGCGGCGTTGAAG
ACAGCTCGGCGGTGGCGGCGGCGGCCGGGGTCGACTGGGACCCCAAGAAG
GCGGAGGAGATGATCAAGCGGGCGGCGTTCATCCAGGGGAGGTTCCTCGG
GCTTCGGCACCCGACGGTTGCGTCGAGCATGCGCGCGATGGCGGAACTCT
ACCGCAGGCAGGGGAGGCTGGCGGAGGCGGAGCCGCTCTTCAGGAGGGCG
ATCGGGATCTGGGAGGTGTCGGGGGGCGAGGGGGGGATGGACTCCGACGC
CATCGCCGCGCTGCACGGAACCGCGCACTGCGTGCTGGCCGGCGCGGGGG
CGGACTGGCTCGGCAGGTTCGAGGAGGCGTTTGCCCTGGTCGATCAGGCC
TACCGTATCGCCTCGTCGCACCCCGGGAAGTGAGTGTTTTTTTTCTTCTT
TTTGGCCGCTGTTTGCAATATCTGGTGTCAGCACTCTAGTCTAGCTTCGA
TGCGAAGTTGCTTTTTGTTTGTGCTGTTGTTTGCAGTACACGTCCGGTGT
CAGCGCCCTCGGCTAACTTCGCTGCGAGGTGATCGTCGAGTGAGTGCTCT
GGTAGGCCGCATTTTTGTCTGATAGCGGCTGTCTCGGGATTTTTTTCGGC
GCGATGTATATCGTCGACGGAAGCGTGTTGTTCTGCATTATTTATCCGGT
GGCATTGGCCTCGGCCAGTCGTGTTGCTGCGGTGGGGGTTAATCGTTCTC
CTGGAGTAGGTACAAAGTCGTCGCCACGCCTATGTCCCTCATGTCGACA

Coding sequence (CDS) from alignment at Scaffold_70:271163..274661+

>EsuBft1743_4a-0001 ID=EsuBft1743_4a-0001|Name=EsuBft1743_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1941bp|location=Sequence derived from alignment at Scaffold_70:271163..274661+ (Ectocarpus subulatus male Bft15b)
ATGTTCCGATGTTTGTATGTACATGTCCACCGCCCCCTGTCCGACGTATC
ACCAACCCCTACCCGAAAACAAACAAACAGCGATGCTGGTGCGGAGGCCG
CGCAACGCCATGCGCTAGCCCTGAGGTGTCGAGAGTGGGAAGACCGTGAC
GGAGGCGTGTTTGCCGGGGGGGGACGGCAAGAGGGTGACGCGGGGCGTGG
TGCTGGTTGTGATTCGGGCTTGTTGGACCCGTCGAGTGCTGTCGTCGCGG
CGAAGAGGGCGGCGGTGCCATGCCTGCGTAACCTGGCCAGCTTCGTGTCC
AACCAGGGGAGACATGTGGACGCCGAAGTGGTCCTGCGCACTGTGCTCAA
CATCCTCCGAGACTACAAGCAACAGCTCAGCAGCCAGCATCATGACGGCA
AGGGCAAGCGCGAGGCCGACGCACCTCAACTGGACGGCGGGGGAGGCTTC
GGCACCCACTCGGCCTCCTTCACGCCGTCGTCGTTTGAAGAGAGGCGATC
GGACGAAGCACGAGCGGACGTTGGCTCCCCGGCGCCGTCGCCAACGCCCG
AAACCCACGACGGCAGCCCCGCAGCACATCCGACAACAGCACCCCCTCCG
TTGTCCGCGGTGCCCGAGGTGGGCATCGCTGGGCGGTACGAAAGCCTTGG
TAGGGATGGCTCCACGGCCAACCCCACCACCGGCGGTGACGCATACGAGA
GCGGGAACACCCCGGCGGGTTCGCGTCCAAGCGCCGAGACCGCGGGCGGC
GGCGGGGGGGGGGGGGGGGTCGAAGGCGACGATCTAAGGAGCCAAGCTGC
ACAGGCTACGGCCGCGCTGGCGGAGGAAACGGTGGCGTCGGCGATGGCGG
CGGCCACGAGAGCGGTCGCCGTGATGGGAGAGACGGCGGCTACGCTAGAG
CCTTCCCTCGTCGTCAACCACAACCGCGCGACGAGAAGCGACGCCTCCCC
GGCCCCCCCGCCACCGTCCCCCGTCCCCCTGATGAAGCAGGCCAGCGCCG
GCCCGACGGCAGGGAGGCGGGGCGGCAGGCTGGAGGAGAGCAGGCTGCCG
GGCATGAAATTCGCCGGGGGTGAGAGCGGTGACGACGAGCGGGGCTTGGA
GGATGTCGAAGGAGGGGAGGACGAGGACCCGGATCAGATGGCGGCGGTGA
CAAGACACCGCCTTGCAGTCGTCATTCACGCGCAGGGTCGAGCGAAAGAG
GCCGAGCAGCTCCTGGAGGATAGCCTCCGCGTCCTCAAGCGGAGAAAGCC
GCCTCAGGCGGTGTGTGTCGCCCAAGCGATGCACGACCTGGCAGGGATCG
TCCGCCCGGCAGACCCCGCCCGGGCGTGCACCCTCTACCGCCAGGCCCTC
AAGACCCTCGAGGGGGCCTGCGGCGTCGACCACTTCCTGACGACCCCTAC
GCTCGCCAAGCTGGGGGCTCTTCTGGGGGAGAGTCTGGTGGCCGCGGCGG
ACATCCCCATAACGCCCGCCCAGCCGGCGGGCCCCGGCTGCGCCGGCATC
CAGCGGAGCGCGGGGCTTGCGGAGGCCGTGTGCGCCAGCGCCGGGTGCGG
CGTTGAAGACAGCTCGGCGGTGGCGGCGGCGGCCGGGGTCGACTGGGACC
CCAAGAAGGCGGAGGAGATGATCAAGCGGGCGGCGTTCATCCAGGGGAGG
TTCCTCGGGCTTCGGCACCCGACGGTTGCGTCGAGCATGCGCGCGATGGC
GGAACTCTACCGCAGGCAGGGGAGGCTGGCGGAGGCGGAGCCGCTCTTCA
GGAGGGCGATCGGGATCTGGGAGGTGTCGGGGGGCGAGGGGGGGATGGAC
TCCGACGCCATCGCCGCGCTGCACGGAACCGCGCACTGCGTGCTGGCCGG
CGCGGGGGCGGACTGGCTCGGCAGGTTCGAGGAGGCGTTTGCCCTGGTCG
ATCAGGCCTACCGTATCGCCTCGTCGCACCCCGGGAAGTGA