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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7176.CPIJ014762-PA |
| ProteomeId | EsuBft1743_3 |
| Protein domains | PTHR14155 |
| Protein domains | SSF57850 |
| Protein domains | IPR001841 |
| Protein domains | IPR013083 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 367 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.5e-09 |
| EggNOG OGs | KOG1280@1|root,KOG1280@2759|Eukaryota,39BPD@33154|Opisthokonta,3CFR3@33208|Metazoa,3DX5G@33213|Bilateria,42C4S@6656|Arthropoda,3SWF6@50557|Insecta,459VF@7147|Diptera,45M3C@7148|Nematocera |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Drought induced 19 protein (Di19), zinc-binding |
| COG category | O |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1743_3a-0001 ID=EsuBft1743_3a-0001|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3673bp|location=Sequence derived from alignment at Scaffold_70:274663..279478+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TACTTGACCCCTGTCCGTCCTTCTTCACGTAGCCACTACTTGTCCGATAG
AAGACACTCCCTGTAAACCTGACGATGCCCCCCCCCCAAACCAGCGACGC
CTGTTCGCGCCTCCTCCTGGAAGCCTTGCGCATGATAGGCTCGCGCCAGA
GGCAGGGTCGCGGAGACCCTCAGCCCGCCTCCGCCGCGATCATGGAAGGC
GTTTGGACCGGCCGTTGGGATCCCGCCAAGAACGGCGGCTCCAGCCGCGG
CGACGCCACGCAAGGGCGGCACGCCAGGAGCCCCGGCAACGGCGACGGTA
ACCCGCGCTGCGCCGTGTGCCTCGAAGCGGTCGGCGGGGGGGAGCCGACC
GTCGACGGTGGTGCTCTCGGGCGGGAGGGCGGCGGGAGGGCGGCGGCTGC
TGCTGATTGGACGGCGGACATCGGGTCGGACGAGGGTCTCCGCGCCGAGA
CGATGGAGAGTGTCCACGCGAGCAGGAGCTTTGCGTACCTCCCGTGCGGG
CACCGTTTCCACACGCACTGCATCGGGCGCTGGCTGGTACACAGCTCGTC
CTGCCCGTCTTGCCGCAGCCAAGTGGAAGAGGAAACCATCCCAGCCCCCG
TTGCCACGGACGCCGCCGCTCCTCCGTTGCCGCCGGACGAGGCAAGAGGA
CACGGTGCGCGAGCAGTCGGCGGTTCTCCTGTCGCCGCCTCGCGAGACAG
ACTGTCCACACCCGAGGCGGAGGCGGCGGAAGTCGCGGACTCTGTCCTGA
CGGCAGCGGCCGACTCTGTCTTGACGGCAGCCACGCGCGGGTTGCCGGTC
AGGCTCAGCCTGGGGGCGACGCAGATGGTCACGTGAGGTTCGTCAGGGTG
AATAGGCGAGGGGGGGAGGGTGCCGCCGCCGGCGGTGGAGGGGGCTCCGC
GGTTGCTGTGGAAGAATGCGCGCCCTTTTGCTGAGCCGTACCACGTGGCA
ATCAACGACTTTGGGTGGTTGAGTCCCAGAGTTTATTTTTTTTCGTCGAG
TGGTCAAAGCTTTCATGGTCGTTGCGGTGCCGTGGTGGATACCATTCGTT
GACAGTCGGGGGTGGTTAGTATGGGTAAGAGGAAGTGCGGGAATAGGAAG
GAGAATTCGATGTATTGTTCACGGCCGGGGTGACTATGTTGTGGCGGGGA
GAATGAATGTATTTTCGAGGTGCGAGTTGGAGGTGGGACGGGGGGAGGGG
GGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGG
GGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTATCGCTG
GACGAGTGCGTTTTCTGAGCACACCATATTGTTTTCGTTTCGGTGAGCAA
AAACAACGCCTCTGTCTGCGTGTTTTTGCGTGTGCGTATGCGTGTGTATA
TCCAGCAAGCGCAGCTCAGACGCTTCCCGCCTTGTTGGAAAAACCGGCGT
ATTGCACCCCTTCCTCCTGTCTAGTTCCCATGTCCCCTACTTCGCGTGGA
TGTATGTTCCAAGCACGGGGAGCGCGCTTTTTTTGGAACGAAACGTAAAT
TGGAGGAGTGTGGAGGAGGTAACAGACACAATGTTTGGGCACGCACGTGA
GTACGTCAAGTATAAATGGGTTTTTGATGTTACGGGCGTGTGCAAGTAAG
TACAGGCGCGCGTGCTGCGATGCCATTTTTTTTTTTTGCTTCTAGATTGG
CTGTCTTTTATGTTGTCCTGCATGCTGTGTGTTGTAGAGCCCACCAGGTT
TCCTCACACGCAAGTTTTTTTTTGTTATATCGTCTCTATGCGTAGTGTGT
TGTATAAGGCGCGCGGTGAGAGCCTGCCTGTCGATATTGTATTCCGTCGT
GGTTTGATCGAGCTGCTATTTGGGCGTGAGGGAGGGAGAGAGTTAATTAG
GTGCAATCAACCCATCGGTAAAACAAGCGCGGACGCGCGCGCTGTTGCTC
TCACGTTTATGTATTGGTTTCCGATTTCTACATAGTCCGTCTCTGGATTC
ATTCGAAGCGGTGTTAGTATGTTGTCCCAGCTGCTCAAGCGATGTGCAGT
TTTTTTTTCTAGTGAAAAACGTGACCGCAGTGAGCGAACTACACCAACCA
GCCAATCAATGTTTCTTTGGAGTATCACGACGTCGATACTACGTGTTGTT
GAAATATGTAGTGTGTGTTGAATGCGAAGATGCCGTATTTATTACCAAAC
TTGCAGGAGTCCTGTACGCAGAAGCGTTTTGATAAAAAAGCTACTTGTCG
TCGATAAAATTCCGCGCGCGAAAGATTTCCATTCAGGGTGGTATTTTTGT
TTTTTCTCCCATCATTGGACTCTGTCGTCTGCCCATTGACTCCACTTGTA
CTAGCTAGACGACCCAACCGGGGTCAGATGGGAGGGGAGGACTGGACCCC
CTCCTGCGGTTCATACCTGAGGTATTTTTATCGCGAGAAGGGTACAGCAC
TCCCTTCCCTCGCGACTTACGAAGTCGATTATGGTTTACTAACAACGAGC
TTTGCAGCGCGTCGCTTTCATCCTGGACCAGGATTATTTAGTGAGAACAC
TCACTCTGCCGGGACTCGAACCCATGACCTGGCCCTTAGCAGGCTGCGAG
GTTACCCACTAGACCACCGGGGCGTATGTAAAGTATTAGTCGGTTTGGGG
GGTGGAGGATGGGCATTATGACAATACAAGTAAAGCTGGTGTCGTATATA
TTATGTGTGTATTGTGTGTTTTCGTCCTATTTATTATGGCGACAGTCCCC
CCATTTTTCGTGGTGAGACGTGTACTACACTTTTCAGTGTTTTTTTTCGT
GCAACTGCAACCATACAGGGTCACACAGGAGGAGGGGGTAAACACCAGTG
TTTTTTTCTTCTTTTCATTTATTTTCATGCCCCACCTTCCTCCTGCGGTG
CGTGCTGAATTTTGTTTTCATCGCGAGAAAAAGGGTCCAGCCGTCCCTTC
CCTCGCCAACGGTGCTAACGTCGAAGTTTGGTACTCACGAGAGCTTGTCA
GCTTTGTTTTGCTTTCACCCGCACATTTCGTAAAATTTTTACCCCATGGG
GATTCGAACTCACGACCTTCGCAACTACCTGGTAGCGGATTACGAGGATA
CTACTAGACTTTAGACCACCGGGGCGACCGGTTACGTATGATGCATGGCA
AACATTTATATTTTGTTGGAAAGCTTGGGTGGGTCGTGAGCTGCCGTTGA
ATTTATTTTCGTTTTCGACCTCCCGCAAGAAAGGAAGGGTTCGATCAGCG
CCCACTGGTCCACGAGGTCGACTTGAATCGTCAAGCAAACACCAAGAAGC
TGCGACTTTTATTTTTGTAACTCGTTCGGTTCATTTCTATTTTGAGCGCC
CCCCCTTTTTCTTTTTTTCGGGGGTCGCCCAATTAATTTTTGTGTTGTCT
GTTTGTTGGAGAAAGTCCCAGTCAGTGTAGGGTCAACATGCATGATGGTT
GGAGAAAATTTCACTTTTCTTCTTTTTTAGCGAGAAATGATGCCGCGTTA
TGTGGGGAAGAGGGCATCATCGGTGATGTTGTGAGTGTGTCGGCCGAAGA
CTTGGTGCTACAGCGTGCCGAAAAAAGAATATCGTGACTTTTTTCTCATC
AGTTTGTTCTGTGGTGGCGCTTA back to topprotein sequence of EsuBft1743_3a-0001 >EsuBft1743_3 ID=EsuBft1743_3|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=253bp
MPPPQTSDACSRLLLEALRMIGSRQRQGRGDPQPASAAIMEGVWTGRWDP
AKNGGSSRGDATQGRHARSPGNGDGNPRCAVCLEAVGGGEPTVDGGALGR
EGGGRAAAAADWTADIGSDEGLRAETMESVHASRSFAYLPCGHRFHTHCI
GRWLVHSSSCPSCRSQVEEETIPAPVATDAAAPPLPPDEARGHGARAVGG
SPVAASRDRLSTPEAEAAEVADSVLTAAADSVLTAATRGLPVRLSLGATQ
MVT back to topmRNA from alignment at Scaffold_70:274663..279478+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1743_3a-0001 ID=EsuBft1743_3a-0001|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4816bp|location=Sequence derived from alignment at Scaffold_70:274663..279478+ (Ectocarpus subulatus male Bft15b)
TACTTGACCCCTGTCCGTCCTTCTTCACGTAGCCACTACTTGTCCGATAG
AAGACACTCCCTGTAAACCTGACGATGCCCCCCCCCCAAACCAGCGACGC
CTGTTCGCGCCTCCTCCTGGAAGCCTTGCGCATGATAGGCTCGCGCCAGA
GGCAGGGTCGCGGAGACCCTCAGCCCGCCTCCGCCGCGATCATGGAAGGC
GTTTGGACCGGCCGTTGGGATCCCGCCAAGAACGGCGGCTCCAGCCGCGG
CGACGCCACGCAAGGGCGGCACGCCAGGAGCCCCGGCAACGGCGACGGTA
ACCCGCGCTGCGCCGTGTGCCTCGAAGCGGTCGGCGGGGGGGAGCCGACC
GTCGACGGTGGTGCTCTCGGGCGGGAGGGCGGCGGGAGGGCGGCGGCTGC
TGCTGATTGGACGGCGGACATCGGGTCGGACGAGGGTCTCCGCGCCGAGA
CGATGGAGAGTGTCCACGCGAGCAGGAGCTTTGCGTACCTCCCGTGCGGG
CACCGTTTCCACACGCACTGGTGAGGAGGGGTGTATGCTTGTTGGATAGG
AACGCTCTCGGTGGGCGCGGCGCTTTTGATGAGCACCGTTTGATGGGGTT
TGCGTCACATTAAGGTTTCCTGCTCTGTAATTGGGCAAAATGCTTCCTCG
GAAACGTGTGTTTGTTTGATGTAGTCGCGTGTCGGAGATACAACAGAGAA
TAACGTCTGGCGCGGAGCTGACACGCGGGAGGACGCAGCCTGCCAGGTCT
CAGCCTAGCCGCCTCGAGCTCCTTCTCGAGCATGTTTGACTGTTTTCTCC
TCTCTCTCTCTCTGTGTCTCCTGTCTGGCTATTCATCTTTGTTCTTCTCT
GTCTACCTGACTGTCTGTCTTTCTCCTTCCGTCTTTGCACGATAGTGATT
TGTACAACGTACTTTTTCCCTCCCTTCCCTAGCATGCCATGGTCCTGTGG
GAAAAATGTTCCGTCTTCTCGAGGACGGGTGGTCAATGGTCTAAACGCCA
AGGGGTGCAATACAAAAGACTGCCCCCCCCCCCGTGCAAGCCATCGGCTC
TCCATCGCAAACCGAGTTGGCCGACGAAGTTACACCAAACAGGGTTTTCG
CCTGATTGAGAGCGGAGTATACGATTGAGAGCGGGAGCCAAAAAAATTGA
AATTTCGGGTCCAGACGCCTCTTGCCATTTCTTGGGAAGTAGGGGGCGGG
CTCTTCCAAGAAGCGGCGCAAATTGAAGGTCTCATCAGCAGCGTCACGAG
CATATGCGTGTCATCGCGATCGGATGCTGCAGCTAGGAGCTAGACAAGTT
GCTAGATTTCCCCAGATTGGCTATTCCTGCCTCAAACTGTTTCAGGGCGA
TTTGATCGCGGGCGGTGGGCTCTGCTGTAGATTCTGCTCCCCGCTGTAGC
TCCACAACGAGAGACGCCCACAGGATGACCAGGGTATCGGCTCGTAGCTA
CGAGCTAGGCCTTCAATTAAAGTCACGCAGCAAGCGCCACTTCTCAGCGG
TAGTCCAGCTACAGCGCATCGCGTAATCTCGCTCTCAATCAGAAACTTCG
CTCTCAATCACACGAAAACCTTTTTACCAGCGCCCCTCGATAAACTTGTC
TTCCCCGCCCCCTCTAATTTATTTGTTTTTCCTCCCTGCTGCTCATGGAA
CGTGCATGCACAGCATCGGGCGCTGGCTGGTACACAGCTCGTCCTGCCCG
TCTTGCCGCAGCCAAGTGGAAGAGGAAACCATCCCAGCCCCCGTTGCCAC
GGACGCCGCCGCTCCTCCGTTGCCGCCGGACGAGGCAAGAGGACACGGTG
CGCGAGCAGTCGGCGGTTCTCCTGTCGCCGCCTCGCGAGACAGACTGTCC
ACACCCGAGGCGGAGGCGGCGGAAGTCGCGGACTCTGTCCTGACGGCAGC
GGCCGACTCTGTCTTGACGGCAGCCACGCGCGGGTTGCCGGTCAGGCTCA
GCCTGGGGGCGACGCAGATGGTCACGTGAGGTTCGTCAGGGTGAATAGGC
GAGGGGGGGAGGGTGCCGCCGCCGGCGGTGGAGGGGGCTCCGCGGTTGCT
GTGGAAGAATGCGCGCCCTTTTGCTGAGCCGTACCACGTGGCAATCAACG
ACTTTGGGTGGTTGAGTCCCAGAGTTTATTTTTTTTCGTCGAGTGGTCAA
AGCTTTCATGGTCGTTGCGGTGCCGTGGTGGATACCATTCGTTGACAGTC
GGGGGTGGTTAGTATGGGTAAGAGGAAGTGCGGGAATAGGAAGGAGAATT
CGATGTATTGTTCACGGCCGGGGTGACTATGTTGTGGCGGGGAGAATGAA
TGTATTTTCGAGGTGCGAGTTGGAGGTGGGACGGGGGGAGGGGGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGTGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTATCGCTGGACGAGT
GCGTTTTCTGAGCACACCATATTGTTTTCGTTTCGGTGAGCAAAAACAAC
GCCTCTGTCTGCGTGTTTTTGCGTGTGCGTATGCGTGTGTATATCCAGCA
AGCGCAGCTCAGACGCTTCCCGCCTTGTTGGAAAAACCGGCGTATTGCAC
CCCTTCCTCCTGTCTAGTTCCCATGTCCCCTACTTCGCGTGGATGTATGT
TCCAAGCACGGGGAGCGCGCTTTTTTTGGAACGAAACGTAAATTGGAGGA
GTGTGGAGGAGGTAACAGACACAATGTTTGGGCACGCACGTGAGTACGTC
AAGTATAAATGGGTTTTTGATGTTACGGGCGTGTGCAAGTAAGTACAGGC
GCGCGTGCTGCGATGCCATTTTTTTTTTTTGCTTCTAGATTGGCTGTCTT
TTATGTTGTCCTGCATGCTGTGTGTTGTAGAGCCCACCAGGTTTCCTCAC
ACGCAAGTTTTTTTTTGTTATATCGTCTCTATGCGTAGTGTGTTGTATAA
GGCGCGCGGTGAGAGCCTGCCTGTCGATATTGTATTCCGTCGTGGTTTGA
TCGAGCTGCTATTTGGGCGTGAGGGAGGGAGAGAGTTAATTAGGTGCAAT
CAACCCATCGGTAAAACAAGCGCGGACGCGCGCGCTGTTGCTCTCACGTT
TATGTATTGGTTTCCGATTTCTACATAGTCCGTCTCTGGATTCATTCGAA
GCGGTGTTAGTATGTTGTCCCAGCTGCTCAAGCGATGTGCAGTTTTTTTT
TCTAGTGAAAAACGTGACCGCAGTGAGCGAACTACACCAACCAGCCAATC
AATGTTTCTTTGGAGTATCACGACGTCGATACTACGTGTTGTTGAAATAT
GTAGTGTGTGTTGAATGCGAAGATGCCGTATTTATTACCAAACTTGCAGG
AGTCCTGTACGCAGAAGCGTTTTGATAAAAAAGCTACTTGTCGTCGATAA
AATTCCGCGCGCGAAAGATTTCCATTCAGGGTGGTATTTTTGTTTTTTCT
CCCATCATTGGACTCTGTCGTCTGCCCATTGACTCCACTTGTACTAGCTA
GACGACCCAACCGGGGTCAGATGGGAGGGGAGGACTGGACCCCCTCCTGC
GGTTCATACCTGAGGTATTTTTATCGCGAGAAGGGTACAGCACTCCCTTC
CCTCGCGACTTACGAAGTCGATTATGGTTTACTAACAACGAGCTTTGCAG
CGCGTCGCTTTCATCCTGGACCAGGATTATTTAGTGAGAACACTCACTCT
GCCGGGACTCGAACCCATGACCTGGCCCTTAGCAGGCTGCGAGGTTACCC
ACTAGACCACCGGGGCGTATGTAAAGTATTAGTCGGTTTGGGGGGTGGAG
GATGGGCATTATGACAATACAAGTAAAGCTGGTGTCGTATATATTATGTG
TGTATTGTGTGTTTTCGTCCTATTTATTATGGCGACAGTCCCCCCATTTT
TCGTGGTGAGACGTGTACTACACTTTTCAGTGTTTTTTTTCGTGCAACTG
CAACCATACAGGGTCACACAGGAGGAGGGGGTAAACACCAGTGTTTTTTT
CTTCTTTTCATTTATTTTCATGCCCCACCTTCCTCCTGCGGTGCGTGCTG
AATTTTGTTTTCATCGCGAGAAAAAGGGTCCAGCCGTCCCTTCCCTCGCC
AACGGTGCTAACGTCGAAGTTTGGTACTCACGAGAGCTTGTCAGCTTTGT
TTTGCTTTCACCCGCACATTTCGTAAAATTTTTACCCCATGGGGATTCGA
ACTCACGACCTTCGCAACTACCTGGTAGCGGATTACGAGGATACTACTAG
ACTTTAGACCACCGGGGCGACCGGTTACGTATGATGCATGGCAAACATTT
ATATTTTGTTGGAAAGCTTGGGTGGGTCGTGAGCTGCCGTTGAATTTATT
TTCGTTTTCGACCTCCCGCAAGAAAGGAAGGGTTCGATCAGCGCCCACTG
GTCCACGAGGTCGACTTGAATCGTCAAGCAAACACCAAGAAGCTGCGACT
TTTATTTTTGTAACTCGTTCGGTTCATTTCTATTTTGAGCGCCCCCCCTT
TTTCTTTTTTTCGGGGGTCGCCCAATTAATTTTTGTGTTGTCTGTTTGTT
GGAGAAAGTCCCAGTCAGTGTAGGGTCAACATGCATGATGGTTGGAGAAA
ATTTCACTTTTCTTCTTTTTTAGCGAGAAATGATGCCGCGTTATGTGGGG
AAGAGGGCATCATCGGTGATGTTGTGAGTGTGTCGGCCGAAGACTTGGTG
CTACAGCGTGCCGAAAAAAGAATATCGTGACTTTTTTCTCATCAGTTTGT
TCTGTGGTGGCGCTTA back to topCoding sequence (CDS) from alignment at Scaffold_70:274663..279478+ >EsuBft1743_3a-0001 ID=EsuBft1743_3a-0001|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=762bp|location=Sequence derived from alignment at Scaffold_70:274663..279478+ (Ectocarpus subulatus male Bft15b)
ATGCCCCCCCCCCAAACCAGCGACGCCTGTTCGCGCCTCCTCCTGGAAGC
CTTGCGCATGATAGGCTCGCGCCAGAGGCAGGGTCGCGGAGACCCTCAGC
CCGCCTCCGCCGCGATCATGGAAGGCGTTTGGACCGGCCGTTGGGATCCC
GCCAAGAACGGCGGCTCCAGCCGCGGCGACGCCACGCAAGGGCGGCACGC
CAGGAGCCCCGGCAACGGCGACGGTAACCCGCGCTGCGCCGTGTGCCTCG
AAGCGGTCGGCGGGGGGGAGCCGACCGTCGACGGTGGTGCTCTCGGGCGG
GAGGGCGGCGGGAGGGCGGCGGCTGCTGCTGATTGGACGGCGGACATCGG
GTCGGACGAGGGTCTCCGCGCCGAGACGATGGAGAGTGTCCACGCGAGCA
GGAGCTTTGCGTACCTCCCGTGCGGGCACCGTTTCCACACGCACTGCATC
GGGCGCTGGCTGGTACACAGCTCGTCCTGCCCGTCTTGCCGCAGCCAAGT
GGAAGAGGAAACCATCCCAGCCCCCGTTGCCACGGACGCCGCCGCTCCTC
CGTTGCCGCCGGACGAGGCAAGAGGACACGGTGCGCGAGCAGTCGGCGGT
TCTCCTGTCGCCGCCTCGCGAGACAGACTGTCCACACCCGAGGCGGAGGC
GGCGGAAGTCGCGGACTCTGTCCTGACGGCAGCGGCCGACTCTGTCTTGA
CGGCAGCCACGCGCGGGTTGCCGGTCAGGCTCAGCCTGGGGGCGACGCAG
ATGGTCACGTGA back to top
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