EsuBft1742_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1742_4a-0001
Unique NameEsuBft1742_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:886141..886708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1742_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length49
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_4aEsuBft1742_4aEctocarpus subulatus male Bft15bgeneScaffold_242 886141..886708 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_4a-0001-exonagat-exon-73591Ectocarpus subulatus male Bft15bexonScaffold_242 886141..886599 -
EsuBft1742_4a-0001-exonEsuBft1742_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 886676..886708 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_4a-0001-exonagat-three_prime_utr-6105Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 886141..886560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_4a-0001-cdsEsuBft1742_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 886561..886599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_4a-0001EsuBft1742_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 886561..886708 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1742_4a-0001 ID=EsuBft1742_4a-0001|Name=EsuBft1742_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=492bp|location=Sequence derived from alignment at Scaffold_242:886141..886708- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGACTCCAAAACGAACTCGAGTACAAGGGTAGTTTAGCCTCCCC
CATGAAGCGCCCTCAAATATAGCCCCCATAGAATGCGCTACCCAAGACGC
GTGACGCATGGATGCGTGGAATGAGGATTGCTTACGGAAACCTCACAGGT
TGAGTGATGTAGGAGATTGCCGGACACATAGACGTGTTGAGTGATTAAAG
CTGTATACTGAAACCCCACGGAAAGGGGAGGTTTGAGATTGCCAGACACA
TACACGGGTTGAGTGGGAATAGCTGCTGGAACCCCACGGGTTGAGTGATG
TTGGAGTGCCGCGCACATAGACGTGTTGAATGAGGATATAAACATTTTGA
ACCTCACAGACAGGTTAGTTGTATTGGAGATTGCGAGACACCTAGACGTG
TTGAGTGAGGATAGCTGCATACTGAAACCTCACAGATGCATTGGTTTTTG
CCAGACACATAGAAGCGCTGAGTGGGGATAGCTGCATATTGA
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protein sequence of EsuBft1742_4a-0001

>EsuBft1742_4 ID=EsuBft1742_4|Name=EsuBft1742_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=23bp
MKGLQNELEYKGSLASPMKRPQI
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mRNA from alignment at Scaffold_242:886141..886708-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1742_4a-0001 ID=EsuBft1742_4a-0001|Name=EsuBft1742_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=568bp|location=Sequence derived from alignment at Scaffold_242:886141..886708- (Ectocarpus subulatus male Bft15b)
ATGAAAGGACTCCAAAACGAACTCGAGTACAAGGTATTAGTAGCCTTACT
TGCTTGGTACACACGTGCAGTTTTCTTCTGTTGCTGCTTTTTCTGTCTTT
GATCCGAAGGGTAGTTTAGCCTCCCCCATGAAGCGCCCTCAAATATAGCC
CCCATAGAATGCGCTACCCAAGACGCGTGACGCATGGATGCGTGGAATGA
GGATTGCTTACGGAAACCTCACAGGTTGAGTGATGTAGGAGATTGCCGGA
CACATAGACGTGTTGAGTGATTAAAGCTGTATACTGAAACCCCACGGAAA
GGGGAGGTTTGAGATTGCCAGACACATACACGGGTTGAGTGGGAATAGCT
GCTGGAACCCCACGGGTTGAGTGATGTTGGAGTGCCGCGCACATAGACGT
GTTGAATGAGGATATAAACATTTTGAACCTCACAGACAGGTTAGTTGTAT
TGGAGATTGCGAGACACCTAGACGTGTTGAGTGAGGATAGCTGCATACTG
AAACCTCACAGATGCATTGGTTTTTGCCAGACACATAGAAGCGCTGAGTG
GGGATAGCTGCATATTGA
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Coding sequence (CDS) from alignment at Scaffold_242:886141..886708-

>EsuBft1742_4a-0001 ID=EsuBft1742_4a-0001|Name=EsuBft1742_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=72bp|location=Sequence derived from alignment at Scaffold_242:886141..886708- (Ectocarpus subulatus male Bft15b)
ATGAAAGGACTCCAAAACGAACTCGAGTACAAGGGTAGTTTAGCCTCCCC
CATGAAGCGCCCTCAAATATAG
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