EsuBft1742_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1742_3a-0001
Unique NameEsuBft1742_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:892718..893356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FT11
ProteomeIdEsuBft1742_3
Protein domainsIPR020683
Protein domainsPTHR24123
Protein domainsIPR002110
Ownerapollo_admin@sb-roscoff.fr
Notetankyrase-1 os:homo sapiens gn:tnks pe:1 sv:2 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length639
Hectar predicted targeting categoryother localisation
Evalue3.04e-19
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionEsV-1-199
Ec32 orthologEc-25_003350.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionspectrin binding
COG categoryI
Cross References
External references for this mRNA
DatabaseAccession
GO0019219
GO0032414
GO0008092
GO0072659
GO0086070
GO0033365
GO2001257
GO0098687
GO0030016
GO0010628
GO0007399
GO0086019
GO0048513
GO0043266
GO1903047
GO2000021
GO0015031
GO0016740
GO0022607
GO0019899
GO0051128
GO0043270
GO2000112
GO0051924
GO0042383
GO0032386
GO0048522
GO0051301
GO0005635
GO0005856
GO0005911
GO0002028
GO0048869
GO0098590
GO1902589
GO0007165
GO0006471
GO0086004
GO1902582
GO0044304
GO0086001
GO0044449
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_3aEsuBft1742_3aEctocarpus subulatus male Bft15bgeneScaffold_242 892718..893356 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_3a-0001-exonEsuBft1742_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 892718..893356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_3a-0001-cdsEsuBft1742_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 892718..893356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1742_3a-0001EsuBft1742_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 892718..893356 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1742_3a-0001 ID=EsuBft1742_3a-0001|Name=EsuBft1742_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=639bp|location=Sequence derived from alignment at Scaffold_242:892718..893356+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGTTGCCGAATGGACTACAGGGATCCCGAAGGGCAAACACTTTT
GCACCTTGCTTGCACCAAGGCCGAGGTTCAAGGGAAAGGGATGTCTGGAC
GCTTGAAGGTCGCCCAGATGTTCCTGAACGAGGGAGCAGACGTGAACGCC
ACCGACGCGAAAGATTTAACACCGCTTCACCACGCGTCTGCTCGTGGGCG
CAAGGCGCTCATGCAACATTTCCTCCGCCGTGGGGCAAAGATTGATGCCC
AGGCAAGGGATGGAGCTACACCACTCATGGTCGTCACTGCCCAACAGCTT
GTGTCTATCCAGATTCTACACGGGGGGGGGGGCGCCAATGCTCTTTTGCC
AAAGATAGACCCCGAGTCGCGAAATGGGAAGTCGGTGCTCCCGTTGGAGG
ATGCGGCGGAGCATGGTAACTTGGATATTGTCCACGAGCTGGTACAGCTC
TTCGGAATCGAGGGTTGTGGTGGTCCCAGTGGTGGTGTGGGTGCTTTAGC
GAATGCCGCTGAATTTGGTCACGTCGGCATAGTGGCTCTTTTGCTTGACG
CCGGCGTCGTCGACACGGGAGAAACGCTTGCTCTGGCCAATGACTCAGGG
AATTCTGCGGTCATGAAAATTCTGGGTCAGCGACGCTAG
back to top

protein sequence of EsuBft1742_3a-0001

>EsuBft1742_3 ID=EsuBft1742_3|Name=EsuBft1742_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=212bp
MRGCRMDYRDPEGQTLLHLACTKAEVQGKGMSGRLKVAQMFLNEGADVNA
TDAKDLTPLHHASARGRKALMQHFLRRGAKIDAQARDGATPLMVVTAQQL
VSIQILHGGGGANALLPKIDPESRNGKSVLPLEDAAEHGNLDIVHELVQL
FGIEGCGGPSGGVGALANAAEFGHVGIVALLLDAGVVDTGETLALANDSG
NSAVMKILGQRR
back to top

mRNA from alignment at Scaffold_242:892718..893356+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1742_3a-0001 ID=EsuBft1742_3a-0001|Name=EsuBft1742_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=639bp|location=Sequence derived from alignment at Scaffold_242:892718..893356+ (Ectocarpus subulatus male Bft15b)
ATGAGAGGTTGCCGAATGGACTACAGGGATCCCGAAGGGCAAACACTTTT
GCACCTTGCTTGCACCAAGGCCGAGGTTCAAGGGAAAGGGATGTCTGGAC
GCTTGAAGGTCGCCCAGATGTTCCTGAACGAGGGAGCAGACGTGAACGCC
ACCGACGCGAAAGATTTAACACCGCTTCACCACGCGTCTGCTCGTGGGCG
CAAGGCGCTCATGCAACATTTCCTCCGCCGTGGGGCAAAGATTGATGCCC
AGGCAAGGGATGGAGCTACACCACTCATGGTCGTCACTGCCCAACAGCTT
GTGTCTATCCAGATTCTACACGGGGGGGGGGGCGCCAATGCTCTTTTGCC
AAAGATAGACCCCGAGTCGCGAAATGGGAAGTCGGTGCTCCCGTTGGAGG
ATGCGGCGGAGCATGGTAACTTGGATATTGTCCACGAGCTGGTACAGCTC
TTCGGAATCGAGGGTTGTGGTGGTCCCAGTGGTGGTGTGGGTGCTTTAGC
GAATGCCGCTGAATTTGGTCACGTCGGCATAGTGGCTCTTTTGCTTGACG
CCGGCGTCGTCGACACGGGAGAAACGCTTGCTCTGGCCAATGACTCAGGG
AATTCTGCGGTCATGAAAATTCTGGGTCAGCGACGCTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_242:892718..893356+

>EsuBft1742_3a-0001 ID=EsuBft1742_3a-0001|Name=EsuBft1742_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=639bp|location=Sequence derived from alignment at Scaffold_242:892718..893356+ (Ectocarpus subulatus male Bft15b)
ATGAGAGGTTGCCGAATGGACTACAGGGATCCCGAAGGGCAAACACTTTT
GCACCTTGCTTGCACCAAGGCCGAGGTTCAAGGGAAAGGGATGTCTGGAC
GCTTGAAGGTCGCCCAGATGTTCCTGAACGAGGGAGCAGACGTGAACGCC
ACCGACGCGAAAGATTTAACACCGCTTCACCACGCGTCTGCTCGTGGGCG
CAAGGCGCTCATGCAACATTTCCTCCGCCGTGGGGCAAAGATTGATGCCC
AGGCAAGGGATGGAGCTACACCACTCATGGTCGTCACTGCCCAACAGCTT
GTGTCTATCCAGATTCTACACGGGGGGGGGGGCGCCAATGCTCTTTTGCC
AAAGATAGACCCCGAGTCGCGAAATGGGAAGTCGGTGCTCCCGTTGGAGG
ATGCGGCGGAGCATGGTAACTTGGATATTGTCCACGAGCTGGTACAGCTC
TTCGGAATCGAGGGTTGTGGTGGTCCCAGTGGTGGTGTGGGTGCTTTAGC
GAATGCCGCTGAATTTGGTCACGTCGGCATAGTGGCTCTTTTGCTTGACG
CCGGCGTCGTCGACACGGGAGAAACGCTTGCTCTGGCCAATGACTCAGGG
AATTCTGCGGTCATGAAAATTCTGGGTCAGCGACGCTAG
back to top