EsuBft1730_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1730_9a-0001
Unique Name	EsuBft1730_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_377	contig	Scaffold_377:238043..241351 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1730_9
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	173
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1730_9a	EsuBft1730_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_377 238043..241351 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1730_9a-0001-exon	EsuBft1730_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_377 238043..238615 +
EsuBft1730_9a-0001-exon	agat-exon-84049	Ectocarpus subulatus male Bft15b	exon	Scaffold_377 240192..241351 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1730_9a-0001-exon	agat-five_prime_utr-3934	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_377 238043..238073 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1730_9a-0001-cds	EsuBft1730_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_377 238074..238615 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1730_9a-0001-exon	agat-three_prime_utr-6036	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_377 240892..241351 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1730_9a-0001	EsuBft1730_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_377 238074..240891 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_377:238043..241351+
coding sequence from alignment at Scaffold_377:238043..241351+

spliced messenger RNA

>EsuBft1730_9a-0001 ID=EsuBft1730_9a-0001|Name=EsuBft1730_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1733bp|location=Sequence derived from alignment at Scaffold_377:238043..241351+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGACGCGGACCGGTGTCTTAAAGGAAGTAATGATCGAATATAAGGCGA
TCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAG
CAAGCGTACTTCGTCGACGGTGAGAGCCACAGGGAGCGGTACTCAAGTAG
GAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCCGCAGCAGCA
GTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGCGGCGGCGGCGGTCGCGGC
GGCCGCTCAGGCGGATCCGGAGGAGTCGAGGAGAGCCAGGGAAGCAGCAG
TGGAGGCGCCGATGGCGGCGGTGGCGGGGACTATAAGTTCCCGGGCCGGT
GCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGGCTGCACTACCAAC
GAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACAA
CAAAGAAAAGTGCGCGACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGGCA
TGAGAGCGACATGGACTCCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAG
TCCCCCCAGGAGAGTGTGGTACCGAGCAGTGACGCCGGCGGTGCCGGCGG
CCCGTGCGGCGAAGAGTCCGGCAACCCAAGTGGGGACGGCGGTAGCGATG
GTGATCCCGGCGACTTCGAGAACCTCGAGGAGTTGAAGTATGATCCAGCC
GACGACCGCTACCCCCGCGGGCTAGAAGGGAAGAAACTCCTCTGGGGCGC
CTCGAACGCTGGCCCGCTGCGCCATGGGCTTGAAAGTGGCCGCACGCTGA
AGCAGACCCGGGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAA
ACACCGGACCCGGAAGAGGCACTGCTGGTGACCATCCTGGAAACTGGCGG
GACGGGGATTGTTGAGTACTTCATCTGCAACTCGCTTGTGAAGGAGCAGT
GGGACGAGAAGCAGCCACGCCGTATGGAGGAGATGTACAGGCGGGAGATG
CAGGAGGTGTTGGGCCCGGAACGGCAGGCGTTCGGGGCCGAGGTCGACGC
CAGCGGGTCCTCGCAACCACTCCCAGACCCACAGCTAAGTATTACCTCGC
CAATCGGGCAGAGGCCGAGTGATGTGGAAGCAGTACCGATGACGTACAAG
GATGTGATGTGTTCCAAGTACAAGATTTTCTGGGAGGCGGCCGTGAGGAA
AGAGATAGATGCTACGGCAAGACTGGAACCTTTATCAAGGTCAAGGAGCT
GCCCGAGGGGCGGAAGGCCATAGGTTCAGAGTGGGTGTTCTCTTGGAAGA
CGAATGAGAAGGGCCTGGTAGTCGACTTCAAGGCCCGTATGGTTGCGCGG
GGTTTCCCTCAAATCTCAGGCATCGACTTCTACCACTCATCCTCAGCGTG
CCCGTCTGCAGGGTCTATCAAGATGGTGATTGCCGTAGCCACTGAAAAGG
GCAAGAACCTCGCTCACTGGGATGTGAAGCAAGCGTACATCCACGCTAAG
CTAAAAGAAGAAATATACGTCAGGTTCCCGGAAGGCTGCGGGTAGCATGT
CCGGCAAGGTGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGT
GGCCATGAGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATGGATA
CGAGCAGTGCAGGGTTGACCTGTGTCTTCGGGAAGGTGGTGGATAGAGAG
GTCGTAGGTCTCATCGTGATCTACGTTGATGAC

protein sequence of EsuBft1730_9a-0001

>EsuBft1730_9 ID=EsuBft1730_9|Name=EsuBft1730_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=413bp
MIEYKAIKDKLEQGKGKGAKGAEQAYFVDGESHRERYSSRSQGQGRGRGG
GRGRSSSRGRGGGGRGGGGGGRGGRSGGSGGVEESQGSSSGGADGGGGGD
YKFPGRCFRCGHRGHQAIGCTTNEKDFVPWCARCEGWGHNKEKCATEEAV
LAQVVGMRATWTPWKTRRFVPWQSPQESVVPSSDAGGAGGPCGEESGNPS
GDGGSDGDPGDFENLEELKYDPADDRYPRGLEGKKLLWGASNAGPLRHGL
ESGRTLKQTREMQGAGEMPGPGETPDPEEALLVTILETGGTGIVEYFICN
SLVKEQWDEKQPRRMEEMYRREMQEVLGPERQAFGAEVDASGSSQPLPDP
QLSITSPIGQRPSDVEAVPMTYKDVMCSKYKIFWEAAVRKEIDATARLEP
LSRSRSCPRGGRP

mRNA from alignment at Scaffold_377:238043..241351+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1730_9a-0001 ID=EsuBft1730_9a-0001|Name=EsuBft1730_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3309bp|location=Sequence derived from alignment at Scaffold_377:238043..241351+ (Ectocarpus subulatus male Bft15b)
GTTGACGCGGACCGGTGTCTTAAAGGAAGTAATGATCGAATATAAGGCGA
TCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAG
CAAGCGTACTTCGTCGACGGTGAGAGCCACAGGGAGCGGTACTCAAGTAG
GAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCCGCAGCAGCA
GTCGTGGCCGCGGCGGAGGCGGTCGCGGCGGCGGCGGCGGCGGTCGCGGC
GGCCGCTCAGGCGGATCCGGAGGAGTCGAGGAGAGCCAGGGAAGCAGCAG
TGGAGGCGCCGATGGCGGCGGTGGCGGGGACTATAAGTTCCCGGGCCGGT
GCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGGCTGCACTACCAAC
GAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACAA
CAAAGAAAAGTGCGCGACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGGCA
TGAGAGCGACATGGACTCCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAG
TCCCCCCAGGAGAGTGTGGTACCGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCCGAGCAACAGCAGCAGCAGCAGCCCGAGCAGCAGCAGG
AGCAGTGACGCCGGCGGTGCCGGCGGCCCGTGCGGCGAAGAGTCCGGCAA
CCCAAGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTTCGAGAACC
TCGAGGAGTTGAAGTATGATCCAGCCGACGACCGCTACCCCCGCGGGCTA
GAAGGGAAGAAACTCCTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCA
TGGGCTTGAAAGTGGCCGCACGCTGAAGCAGACCCGGGAGATGCAAGGTG
CCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCACTG
CTGGTGACCATCCTGGAAACTGGCGGGACGGGGATTGTTGAGTACTTCAT
CTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGAAGCAGCCACGCCGTA
TGGAGGAGATGTACAGGCGGGAGATGCAGGAGGTGTTGGGCCCGGAACGG
CAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCCTCGCAACCACTCCC
AGACCCACAGCTAAGTATTACCTCGCCAATCGGGCAGAGGCCGAGTGATG
TGGAAGCAGTACCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAG
ATTTTCTGGGAGGCGGCCGTGAGGAAAGAGATAGATGCTACGGCAAGACT
GGAACCTTTATCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGG
TTCAGAGTGGGTGTTCTCTTGGAAGACGAATGAGAAGGGCCTGGTAGTCG
ACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCCCTCAAATCTCAGGCATC
GACTTCTACCACTCATCCTCAGCGTGCCCGTCTGCAGGGTCTATCAAGAT
GGTGATTGCCGTAGCCACTGAAAAGGGCAAGAACCTCGCTCACTGGGATG
TGAAGCAAGCGTACATCCACGCTAAGCTAAAAGAAGAAATATACGTCAGG
TTCCCGGAAGGCTGCGGGTAGCATGTCCGGCAAGGTGGTCAAGGTTGAGC
GTGCCCTGTATGGCCTAAAGCAGAGTGGCCATGAGTGGGGGTTTGAAGCT
GCCGATGCCCTCATCGAGAATGGATACGAGCAGTGCAGGGTTGACCTGTG
TCTTCGGGAAGGTGGTGGATAGAGAGGTCGTAGGTCTCATCGTGATCTAC
GTTGATGAC

Coding sequence (CDS) from alignment at Scaffold_377:238043..241351+

>EsuBft1730_9a-0001 ID=EsuBft1730_9a-0001|Name=EsuBft1730_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1242bp|location=Sequence derived from alignment at Scaffold_377:238043..241351+ (Ectocarpus subulatus male Bft15b)
ATGATCGAATATAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAA
AGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGTCGACGGTGAGAGCCACA
GGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGC
GGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAGGCGGTCGCGGCGG
CGGCGGCGGCGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTCGAGG
AGAGCCAGGGAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGCGGGGAC
TATAAGTTCCCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGC
GATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCGTGGTGTGCGCGCT
GCGAGGGGTGGGGCCACAACAAAGAAAAGTGCGCGACGGAGGAGGCCGTC
CTAGCGCAAGTGGTGGGCATGAGAGCGACATGGACTCCGTGGAAGACCAG
GCGTTTTGTGCCGTGGCAGTCCCCCCAGGAGAGTGTGGTACCGAGCAGTG
ACGCCGGCGGTGCCGGCGGCCCGTGCGGCGAAGAGTCCGGCAACCCAAGT
GGGGACGGCGGTAGCGATGGTGATCCCGGCGACTTCGAGAACCTCGAGGA
GTTGAAGTATGATCCAGCCGACGACCGCTACCCCCGCGGGCTAGAAGGGA
AGAAACTCCTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGGCTT
GAAAGTGGCCGCACGCTGAAGCAGACCCGGGAGATGCAAGGTGCCGGGGA
GATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCACTGCTGGTGA
CCATCCTGGAAACTGGCGGGACGGGGATTGTTGAGTACTTCATCTGCAAC
TCGCTTGTGAAGGAGCAGTGGGACGAGAAGCAGCCACGCCGTATGGAGGA
GATGTACAGGCGGGAGATGCAGGAGGTGTTGGGCCCGGAACGGCAGGCGT
TCGGGGCCGAGGTCGACGCCAGCGGGTCCTCGCAACCACTCCCAGACCCA
CAGCTAAGTATTACCTCGCCAATCGGGCAGAGGCCGAGTGATGTGGAAGC
AGTACCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGATTTTCT
GGGAGGCGGCCGTGAGGAAAGAGATAGATGCTACGGCAAGACTGGAACCT
TTATCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAG