EsuBft1730_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1730_8a-0001
Unique NameEsuBft1730_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_377contigScaffold_377:237233..238041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1730_8
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length80
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1730_8aEsuBft1730_8aEctocarpus subulatus male Bft15bgeneScaffold_377 237233..238041 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1730_8a-0001-exonEsuBft1730_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_377 237233..238041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1730_8a-0001-cdsEsuBft1730_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_377 237233..237397 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1730_8a-0001-exonagat-three_prime_utr-6035Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_377 237398..238041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1730_8a-0001EsuBft1730_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_377 237233..237397 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1730_8a-0001 ID=EsuBft1730_8a-0001|Name=EsuBft1730_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=809bp|location=Sequence derived from alignment at Scaffold_377:237233..238041+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTCGAGGAGATGGGGGTGACTCCTCCGGCGACTCTGCGGCGGA
AAACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGATGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCTCTAGTGGAGGATACC
ATGAAGGCAAGCNGAGGTGAGAGTAGCCGCTGCTCACAACCAAGGTTATA
GTAGTGCCATGGGAGATGGTCGTGCTGCTGTTGGCTTTGGATACGGAGCC
ACAACCCCAGCGACGGGGTAGCAAAGTGTGCGGTACACTTCTTCTTCGTT
CAGCGGGAAATCGGAAGATTTTGACGAATGACTAAATGATTTCCGCATGG
CAGCTAATGGCGCGAACGTGTTAGAACAATTTGAAGAAAGCGGGAGCTTG
GAGATCCCCGTCAACAGCGGAAAGAGAAAGTTTTCGCTGTCACAGCAGTA
CCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGCGGAACTTCCTGTCTC
ACGTGTTGAAAGAGAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCCC
CAGGGGGCTCTTCGTGAGCCCAAGACCATACACGACCCTGAATCATCTGT
ACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTAGAA
GTGGAAACCCCCAAAACGCCCTAAATAAGATGCTCTAAACCGCAAAGTCC
TTAACCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTT
TCTGGATGCCCTTTCGGACAAGTATGCCATGACAAAGCACAACCTGCGAC
ACGCGAAGA
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protein sequence of EsuBft1730_8a-0001

>EsuBft1730_8 ID=EsuBft1730_8|Name=EsuBft1730_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MSGRGDGGDSSGDSAAENRKRSREELVALRMQVSSLTDQMSQLMSLVEDT
MKASX
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mRNA from alignment at Scaffold_377:237233..238041+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1730_8a-0001 ID=EsuBft1730_8a-0001|Name=EsuBft1730_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=809bp|location=Sequence derived from alignment at Scaffold_377:237233..238041+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGAGGAGATGGGGGTGACTCCTCCGGCGACTCTGCGGCGGA
AAACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGATGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCTCTAGTGGAGGATACC
ATGAAGGCAAGCNGAGGTGAGAGTAGCCGCTGCTCACAACCAAGGTTATA
GTAGTGCCATGGGAGATGGTCGTGCTGCTGTTGGCTTTGGATACGGAGCC
ACAACCCCAGCGACGGGGTAGCAAAGTGTGCGGTACACTTCTTCTTCGTT
CAGCGGGAAATCGGAAGATTTTGACGAATGACTAAATGATTTCCGCATGG
CAGCTAATGGCGCGAACGTGTTAGAACAATTTGAAGAAAGCGGGAGCTTG
GAGATCCCCGTCAACAGCGGAAAGAGAAAGTTTTCGCTGTCACAGCAGTA
CCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGCGGAACTTCCTGTCTC
ACGTGTTGAAAGAGAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCCC
CAGGGGGCTCTTCGTGAGCCCAAGACCATACACGACCCTGAATCATCTGT
ACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTAGAA
GTGGAAACCCCCAAAACGCCCTAAATAAGATGCTCTAAACCGCAAAGTCC
TTAACCGAGAAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTT
TCTGGATGCCCTTTCGGACAAGTATGCCATGACAAAGCACAACCTGCGAC
ACGCGAAGA
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Coding sequence (CDS) from alignment at Scaffold_377:237233..238041+

>EsuBft1730_8a-0001 ID=EsuBft1730_8a-0001|Name=EsuBft1730_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_377:237233..238041+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGAGGAGATGGGGGTGACTCCTCCGGCGACTCTGCGGCGGA
AAACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGATGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCTCTAGTGGAGGATACC
ATGAAGGCAAGCNGA
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