EsuBft1715_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1715_2a-0001
Unique NameEsuBft1715_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:31873..33687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX68856
ProteomeIdEsuBft1715_2
Protein domainsCoil
Protein domainsPTHR19303
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Notejerky protein homolog-like os:mus musculus gn:jrkl pe:2 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length1384
Evalue5.37e-18
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
Date last modified2016-06-14
Date creation2016-06-14
DescriptionJerky protein homolog-like
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1715_2aEsuBft1715_2aEctocarpus subulatus male Bft15bgeneScaffold_129 31873..33687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1715_2a-0001EsuBft1715_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 31873..33632 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1715_2a-0001-exonagat-exon-77167Ectocarpus subulatus male Bft15bexonScaffold_129 31873..32195 -
EsuBft1715_2a-0001-exonagat-exon-77168Ectocarpus subulatus male Bft15bexonScaffold_129 32286..32464 -
EsuBft1715_2a-0001-exonagat-exon-77165Ectocarpus subulatus male Bft15bexonScaffold_129 32716..32945 -
EsuBft1715_2a-0001-exonEsuBft1715_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 32991..33302 -
EsuBft1715_2a-0001-exonagat-exon-77166Ectocarpus subulatus male Bft15bexonScaffold_129 33348..33687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1715_2a-0001-cdsEsuBft1715_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 31873..32195 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1715_2a-0001-exonagat-five_prime_utr-3856Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 33633..33687 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1715_2a-0001 ID=EsuBft1715_2a-0001|Name=EsuBft1715_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1384bp|location=Sequence derived from alignment at Scaffold_129:31873..33687- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCAAGGCTACATACCTCGCACCATCAGAGCTCAAGAAGACCGTGCGAGA
AAGGCATGAGAGCGAAGGATCGAGTCACCGCCTACATGGCTACGAGCGCC
AGCGGGCGTAAGGTGCCGCTGTCTTTTATCGGCACAGCCAAGGAGCCCCG
GTGCTTCAAGATCCGGGGCTCACCCATCAAGTATTTCAGCCAGGAGAGCG
CGTCGTCGGACGCGCGAGTGTTCAAGCTGTGGTGGTCGCAAGTGTTCCTG
CCACACGTGCGCTCCGTCACCAGCGAGAAGGTTCTTCTCATCATGGACAA
CCACAGCAGCCACGCCGACCTCGTAGACCCCAAGGAGCAGCCCATGGATG
CCGGGATCATCGCAGCCTGGAAAGTGCGGTACAGGACGAAGCTGCTGGGG
ATTCGCGTCGACACGATGACGTCGGCGGCGCAGCTACGGGAGCAGGCGAA
GGAACGCAAGGTGATTCGGGGCTGCATGGGGCTCGCGGAAGGAGNTTTCA
GCCAGGAGAGCGCGTCGTCGGACGCGCGAGTGTTCAAGCTGTGGTGGTCG
CAAGTGTTCCTGCCACACGTGCGCTCCGTCACCAGCGAGAAGGTTCTTCT
CATCATGGACAACCACAGCAGCCACGCCGACCTCGTAGACCCCAAGGAGC
AGCCCATGGATGCCGGGATCATCGCAGCCTGGAAAGTGCGGTACAGGACG
AAGCTGCTGGGGATTCGCGTCGACACGATGACGTCGGCGGCGCAGCTACG
GGAGCAGGCGAAGGAACGCAAGGTGATTCGGGGCTGCATGGGGCTCGCGG
AAGGAGCGCAGCCTCACATCCTGGACGCAGCTGAGCTAGGCCTCGAGGCG
TGGAAGGAAGTTTTGCCGGAGACAATCAAGAGGTACTGGAAGAAATGTGA
CATCCTTCCTCCTGCGGTGCACGCGGACCTCGACCAGGACGTGGGAAAGA
ATATCCCCAACAAGAAGGAGAGTCTCGAAGAGTTGACGGACTTGGTGCAG
CGTCTTTCTCTTGAGGCGAAGAAGTCAACTGTCGATGAAGACCTTGGCGA
GGCGCTTAAGGGGGAGGCGATTATTGCAGATCTGAAGGACGATCTTTGTG
AGGAGTCGCTTGCCCACCTGAACATGGACCAACTGAACATAGACTCGGAC
GACGTCGAGGCCGACTCTTTGGCGGGAGACGAGGGACAGTGTACGCAGAC
CCTGGTCTATCCTCGTCCGCCACCGTACGCTGACGTATCTAGGCAGTTCG
TAGACCTCGAAGAAAAAGCGGAGAGGTGCAGCATGGCCGGGGTAGCTTAC
CATCTTCGCAAGGCGAAGTTAGCCTGGATGAGCGAGGCTGGGTCAAAGAA
AACGAAGCAAACATGCATGGCAGACTTCATGTAA
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protein sequence of EsuBft1715_2a-0001

>EsuBft1715_2 ID=EsuBft1715_2|Name=EsuBft1715_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=442bp
MRAKDRVTAYMATSASGRKVPLSFIGTAKEPRCFKIRGSPIKYFSQESAS
SDARVFKLWWSQVFLPHVRSVTSEKVLLIMDNHSSHADLVDPKEQPMDAG
IIAAWKVRYRTKLLGIRVDTMTSAAQLREQAKERKVIRGCMGLAEGXFSQ
ESASSDARVFKLWWSQVFLPHVRSVTSEKVLLIMDNHSSHADLVDPKEQP
MDAGIIAAWKVRYRTKLLGIRVDTMTSAAQLREQAKERKVIRGCMGLAEG
AQPHILDAAELGLEAWKEVLPETIKRYWKKCDILPPAVHADLDQDVGKNI
PNKKESLEELTDLVQRLSLEAKKSTVDEDLGEALKGEAIIADLKDDLCEE
SLAHLNMDQLNIDSDDVEADSLAGDEGQCTQTLVYPRPPPYADVSRQFVD
LEEKAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTCMADFM
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mRNA from alignment at Scaffold_129:31873..33687-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1715_2a-0001 ID=EsuBft1715_2a-0001|Name=EsuBft1715_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1815bp|location=Sequence derived from alignment at Scaffold_129:31873..33687- (Ectocarpus subulatus male Bft15b)
CCCAAGGCTACATACCTCGCACCATCAGAGCTCAAGAAGACCGTGCGAGA
AAGGCATGAGAGCGAAGGATCGAGTCACCGCCTACATGGCTACGAGCGCC
AGCGGGCGTAAGGTGCCGCTGTCTTTTATCGGCACAGCCAAGGAGCCCCG
GTGCTTCAAGATCCGGGGCTCACCCATCAAGTATTTCAGCCAGGAGAGCG
CGTCGTCGGACGCGCGAGTGTTCAAGCTGTGGTGGTCGCAAGTGTTCCTG
CCACACGTGCGCTCCGTCACCAGCGAGAAGGTTCTTCTCATCATGGACAA
CCACAGCAGCCACGCCGACCTCGTAGACCCCAAGGAGCAGGTGAAGATTC
TTGAGCTGCCACCCAACTGCACGAGCAAGCATTAGCCCATGGATGCCGGG
ATCATCGCAGCCTGGAAAGTGCGGTACAGGACGAAGCTGCTGGGGATTCG
CGTCGACACGATGACGTCGGCGGCGCAGCTACGGGAGCAGGCGAAGGAAC
GCAAGGTGATTCGGGGCTGCATGGGGCTCGCGGAAGGAGNTTTCAGCCAG
GAGAGCGCGTCGTCGGACGCGCGAGTGTTCAAGCTGTGGTGGTCGCAAGT
GTTCCTGCCACACGTGCGCTCCGTCACCAGCGAGAAGGTTCTTCTCATCA
TGGACAACCACAGCAGCCACGCCGACCTCGTAGACCCCAAGGAGCAGGTG
AAGATTCTTGAGCTGCCACCCAACTGCACGAGCAAGCATTAGCCCATGGA
TGCCGGGATCATCGCAGCCTGGAAAGTGCGGTACAGGACGAAGCTGCTGG
GGATTCGCGTCGACACGATGACGTCGGCGGCGCAGCTACGGGAGCAGGCG
AAGGAACGCAAGGTGATTCGGGGCTGCATGGGGCTCGCGGAAGGAGCGCA
GCCTCACATCCTGGACGCAGCTGAGCTAGGCCTCGAGGCGTGGAAGGAAG
TTTTGCCGGAGACAATCAAGAGGTGTGTCCGTGTGGTGGTGTTAACGACA
TTATTCAATAACTGCTGTATAATTTCCCCCCTCTAGACACATACCGTTAC
CACGTATATTGCACGTTGACGAAATTGTTAACTGACGTCATCATCTTGCA
AGTTTTGTTTGAATTGAAAAAATGATAAAATGCTTTTTTTTCCTTCTTTT
TGTTTTTTTCTTTTCTCGCCGTGCACGTTTCTCTCTCCTTCCCGCGTACT
TTTGACTATTCATCGTTTCCAAGGTACTGGAAGAAATGTGACATCCTTCC
TCCTGCGGTGCACGCGGACCTCGACCAGGACGTGGGAAAGAATATCCCCA
ACAAGAAGGAGAGTCTCGAAGAGTTGACGGACTTGGTGCAGCGTCTTTCT
CTTGAGGCGAAGAAGTCAACTGTCGATGAAGACCTTGGCGAGGCGCTTAA
GGGTCTGGGGTTGGCACCTGGCGCAACGCCAACCCGGGCTTCCATGGAAG
CCGTGCAGACATGGTTGCGTGAAGAGGAATAAGAGGGTGTAGGGGAGGCG
ATTATTGCAGATCTGAAGGACGATCTTTGTGAGGAGTCGCTTGCCCACCT
GAACATGGACCAACTGAACATAGACTCGGACGACGTCGAGGCCGACTCTT
TGGCGGGAGACGAGGGACAGTGTACGCAGACCCTGGTCTATCCTCGTCCG
CCACCGTACGCTGACGTATCTAGGCAGTTCGTAGACCTCGAAGAAAAAGC
GGAGAGGTGCAGCATGGCCGGGGTAGCTTACCATCTTCGCAAGGCGAAGT
TAGCCTGGATGAGCGAGGCTGGGTCAAAGAAAACGAAGCAAACATGCATG
GCAGACTTCATGTAA
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Coding sequence (CDS) from alignment at Scaffold_129:31873..33687-

>EsuBft1715_2a-0001 ID=EsuBft1715_2a-0001|Name=EsuBft1715_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1329bp|location=Sequence derived from alignment at Scaffold_129:31873..33687- (Ectocarpus subulatus male Bft15b)
ATGAGAGCGAAGGATCGAGTCACCGCCTACATGGCTACGAGCGCCAGCGG
GCGTAAGGTGCCGCTGTCTTTTATCGGCACAGCCAAGGAGCCCCGGTGCT
TCAAGATCCGGGGCTCACCCATCAAGTATTTCAGCCAGGAGAGCGCGTCG
TCGGACGCGCGAGTGTTCAAGCTGTGGTGGTCGCAAGTGTTCCTGCCACA
CGTGCGCTCCGTCACCAGCGAGAAGGTTCTTCTCATCATGGACAACCACA
GCAGCCACGCCGACCTCGTAGACCCCAAGGAGCAGCCCATGGATGCCGGG
ATCATCGCAGCCTGGAAAGTGCGGTACAGGACGAAGCTGCTGGGGATTCG
CGTCGACACGATGACGTCGGCGGCGCAGCTACGGGAGCAGGCGAAGGAAC
GCAAGGTGATTCGGGGCTGCATGGGGCTCGCGGAAGGAGNTTTCAGCCAG
GAGAGCGCGTCGTCGGACGCGCGAGTGTTCAAGCTGTGGTGGTCGCAAGT
GTTCCTGCCACACGTGCGCTCCGTCACCAGCGAGAAGGTTCTTCTCATCA
TGGACAACCACAGCAGCCACGCCGACCTCGTAGACCCCAAGGAGCAGCCC
ATGGATGCCGGGATCATCGCAGCCTGGAAAGTGCGGTACAGGACGAAGCT
GCTGGGGATTCGCGTCGACACGATGACGTCGGCGGCGCAGCTACGGGAGC
AGGCGAAGGAACGCAAGGTGATTCGGGGCTGCATGGGGCTCGCGGAAGGA
GCGCAGCCTCACATCCTGGACGCAGCTGAGCTAGGCCTCGAGGCGTGGAA
GGAAGTTTTGCCGGAGACAATCAAGAGGTACTGGAAGAAATGTGACATCC
TTCCTCCTGCGGTGCACGCGGACCTCGACCAGGACGTGGGAAAGAATATC
CCCAACAAGAAGGAGAGTCTCGAAGAGTTGACGGACTTGGTGCAGCGTCT
TTCTCTTGAGGCGAAGAAGTCAACTGTCGATGAAGACCTTGGCGAGGCGC
TTAAGGGGGAGGCGATTATTGCAGATCTGAAGGACGATCTTTGTGAGGAG
TCGCTTGCCCACCTGAACATGGACCAACTGAACATAGACTCGGACGACGT
CGAGGCCGACTCTTTGGCGGGAGACGAGGGACAGTGTACGCAGACCCTGG
TCTATCCTCGTCCGCCACCGTACGCTGACGTATCTAGGCAGTTCGTAGAC
CTCGAAGAAAAAGCGGAGAGGTGCAGCATGGCCGGGGTAGCTTACCATCT
TCGCAAGGCGAAGTTAGCCTGGATGAGCGAGGCTGGGTCAAAGAAAACGA
AGCAAACATGCATGGCAGACTTCATGTAA
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