EsuBft1713_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1713_8a-0001
Unique NameEsuBft1713_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:979..1724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1713_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length53
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_8aEsuBft1713_8aEctocarpus subulatus male Bft15bgeneScaffold_170 979..1724 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_8a-0001-exonagat-exon-45679Ectocarpus subulatus male Bft15bexonScaffold_170 979..1271 +
EsuBft1713_8a-0001-exonEsuBft1713_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 1481..1724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_8a-0001-cdsEsuBft1713_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 979..1271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_8a-0001EsuBft1713_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 979..1724 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1713_8a-0001 ID=EsuBft1713_8a-0001|Name=EsuBft1713_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=537bp|location=Sequence derived from alignment at Scaffold_170:979..1724+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGTGCAGGTCAGGAATTCGGTTGCCAATGCGACTGAAGCCCTCAA
GCAGGAAGGACTCGACGCTCTAGAGGACGTCACGGTGCTTCGGGGACGCC
CAGCCGGACATCGCGACCTCAAGCCCTCACCGGACGGCCTACATTTTGAA
CGCGTCACACTGGAAGCCCTGCTTCGGCCCGAGTTCGCGACAATGCCAGA
GGAAGATCAAGCAGCGTACATTTACTGCATGGCCTCGCCATNGTCCTGCC
TGCTTGAGGGCTTCACTCGCATTGGCAACCGACGTCTTGGCCACGCGCCC
ACNGCCCTCAAGCAGGAAGGACTCGACGCTCTAGAGGACGTCACGGTGCT
TCGGGGACGCCCAGCCGGACATCGCGACCTCAAGCCCTCACCGGACGGCC
TACATTTTGAACGCGTCACACTGGAAGCCCTGCTTCGGCCCGAGTTCGCG
ACAATGCCAGAGGAAGATCAAGCAGCGTACATTTACTGCATGGCCTCGCC
ATGCGTTCAAAATGTAGGCCGTCCGGTGAGGGCTTGA
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protein sequence of EsuBft1713_8a-0001

>EsuBft1713_8 ID=EsuBft1713_8|Name=EsuBft1713_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=178bp
MYVQVRNSVANATEALKQEGLDALEDVTVLRGRPAGHRDLKPSPDGLHFE
RVTLEALLRPEFATMPEEDQAAYIYCMASPXSCLLEGFTRIGNRRLGHAP
TALKQEGLDALEDVTVLRGRPAGHRDLKPSPDGLHFERVTLEALLRPEFA
TMPEEDQAAYIYCMASPCVQNVGRPVRA
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mRNA from alignment at Scaffold_170:979..1724+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1713_8a-0001 ID=EsuBft1713_8a-0001|Name=EsuBft1713_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=746bp|location=Sequence derived from alignment at Scaffold_170:979..1724+ (Ectocarpus subulatus male Bft15b)
ATGTATGTGCAGGTCAGGAATTCGGTTGCCAATGCGACTGAAGCCCTCAA
GCAGGAAGGACTCGACGCTCTAGAGGACGTCACGGTGCTTCGGGGACGCC
CAGCCGGACATCGCGACCTCAAGCCCTCACCGGACGGCCTACATTTTGAA
CGCGTCACACTGGAAGCCCTGCTTCGGCCCGAGTTCGCGACAATGCCAGA
GGAAGATCAAGCAGCGTACATTTACTGCATGGCCTCGCCATNGTCCTGCC
TGCTTGAGGGCTTCACTCGCATTGGCAACCGACGTCTTGGCCAGTAAATA
GTGTCGTTCCAAAAAATGGCATTTTTCCATACTCTGACAACACCAACATG
CATGGAACGGAAGAACCACCGCTATTGCATTTTGAACATTGGGANCGTGC
TGCTAGCAGATCTACCATGCTCGTATCCAGACACACGAACAGATTAAGCA
GCGTACATTTACCGCATGGCCTCGTAAGCTGTTGACGTCACGTTGCTTCG
AGCGCGCCCACNGCCCTCAAGCAGGAAGGACTCGACGCTCTAGAGGACGT
CACGGTGCTTCGGGGACGCCCAGCCGGACATCGCGACCTCAAGCCCTCAC
CGGACGGCCTACATTTTGAACGCGTCACACTGGAAGCCCTGCTTCGGCCC
GAGTTCGCGACAATGCCAGAGGAAGATCAAGCAGCGTACATTTACTGCAT
GGCCTCGCCATGCGTTCAAAATGTAGGCCGTCCGGTGAGGGCTTGA
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Coding sequence (CDS) from alignment at Scaffold_170:979..1724+

>EsuBft1713_8a-0001 ID=EsuBft1713_8a-0001|Name=EsuBft1713_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=537bp|location=Sequence derived from alignment at Scaffold_170:979..1724+ (Ectocarpus subulatus male Bft15b)
ATGTATGTGCAGGTCAGGAATTCGGTTGCCAATGCGACTGAAGCCCTCAA
GCAGGAAGGACTCGACGCTCTAGAGGACGTCACGGTGCTTCGGGGACGCC
CAGCCGGACATCGCGACCTCAAGCCCTCACCGGACGGCCTACATTTTGAA
CGCGTCACACTGGAAGCCCTGCTTCGGCCCGAGTTCGCGACAATGCCAGA
GGAAGATCAAGCAGCGTACATTTACTGCATGGCCTCGCCATNGTCCTGCC
TGCTTGAGGGCTTCACTCGCATTGGCAACCGACGTCTTGGCCACGCGCCC
ACNGCCCTCAAGCAGGAAGGACTCGACGCTCTAGAGGACGTCACGGTGCT
TCGGGGACGCCCAGCCGGACATCGCGACCTCAAGCCCTCACCGGACGGCC
TACATTTTGAACGCGTCACACTGGAAGCCCTGCTTCGGCCCGAGTTCGCG
ACAATGCCAGAGGAAGATCAAGCAGCGTACATTTACTGCATGGCCTCGCC
ATGCGTTCAAAATGTAGGCCGTCCGGTGAGGGCTTGA
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