EsuBft1713_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1713_7a-0001
Unique NameEsuBft1713_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:5636..9166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHU1
ProteomeIdEsuBft1713_7
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsIPR009009
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR31836
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR014733
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length223
Hectar predicted targeting categorysignal peptide
Evalue1.24e-159
EggNOG OGs2D16Q@1|root,2SGXE@2759|Eukaryota
Ec32 ortholog descriptionRlpA-like double-psi beta-barrel domain
Ec32 orthologEc-18_000450.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K20628
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_7aEsuBft1713_7aEctocarpus subulatus male Bft15bgeneScaffold_170 5636..9166 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_7a-0001-exonagat-exon-45678Ectocarpus subulatus male Bft15bexonScaffold_170 5636..5982 +
EsuBft1713_7a-0001-exonagat-exon-45677Ectocarpus subulatus male Bft15bexonScaffold_170 6557..6698 +
EsuBft1713_7a-0001-exonEsuBft1713_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 7423..9166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_7a-0001-cdsEsuBft1713_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 5636..5982 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_7a-0001-exonagat-three_prime_utr-5930Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_170 7600..9166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_7a-0001EsuBft1713_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 5636..7599 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1713_7a-0001 ID=EsuBft1713_7a-0001|Name=EsuBft1713_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2233bp|location=Sequence derived from alignment at Scaffold_170:5636..9166+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCACACAGCAAGAAACCCCTCGTCCTCCTTGCCGCGGCCCTCGC
CGCCCCCCTCCCGCCGCGAGCTCGGTCGGCGATGATCGTCCCCCTCATCC
CGCCCCCCTACGACGAGCAGTTCTCCGGAGATGCCACGTACTACGGGGTC
ACCCCCGACGGGGACGGCAACTGCGCGATCCGATCCCCGCTCCCTGAGAT
GTACGACGGGATGATCCCGGTCGCCCTGAACGACGAGCAGTACGCGGACT
CGTACATGTGCGGCGCGTGCATCGAGGGGGAGGGCTCCGGGGAGGGGGAG
GGCGGGGACCCCGTGGAAGGGGCGTTCAAGGCGTACGTGACAGACAGGTG
CCCAGAGTGCTTATTCGGCGATCTGGACTTTGCCGCGGACGGAGACGGTC
GGTGGGACATCTCGTGGCACTTCGTCCCCTGCGAGGGTAGCTCTGACCAG
ACGTTCCTCTTTGAGGGCAGCAACGAGTTCTACTGGAAGATCCAGCCCCG
CGGAGGGCGTTCGCCTGTGGAGAGGCTCTGGATCAACGGTGACGAAGCCG
AACGCTCGGAGGATAACTTTTTCATTCTCGAGGGAGGCCCGTTCGACGGA
GAGCAAGAGGTGCACACCAAGACTGTGCTCAACAAGCGGAGAAGGCAGAG
GGTCGCCATGGCGTAGATATATCTCACCACCGAGACTGCTTTGCGGAAGA
GGAGGGGAAAAGCTCGCGAGCAAGGCTGCCTGGAACAGGAGGAGGAAGCA
GAGCGTTGCTGCTATGGAGTACCCCTGAGAAAGGGAGACAGCAGATCGTT
GCTGCCATGGTGCAGCTCACAGCCAGACCGTCTTGTGACAGTAGGAGGAA
GCGGAGCGTTGGTGCCACGATGTAGCTCACGCCAATACTGCGGAGGGAGA
GGGAAAAGCAAAGCGTGGCCATGGTGATCCTCGCAGCAATAACGTCCTGA
AGAGGGTCAGGAAGCAATAGTGTTGCTGCCTTGGAGTAGATCGTAGCAAG
ACTCAAGTACCTCTTTCCTTTCTTGGCTAGGGTCGCCTTTAACAGTTGTG
CCGGGCACTGCTGCTGTCTCGATTCCACGTTTTTGTCGAACTTTCCGATC
CCTTGCGATACGTCGTGCAGTTTTACTTGTATATTTTTATCGTGCTGTTT
TACGTCATATTGTCGTGGGTCGTCGTGGAATCGTAACGGTGCCCCGTCAT
AGCCTTAGTCTTATCCATTCTTTGATTATTTTATCACCTTCTTGGCCTGC
ACTGCAGCAGGGACTCAGAGGGAGGACACGAACATCATTTCCGGGCCCGG
TTCCAATTTGCTTTCGTCGCCACTGTCGAGCACAGGCTATTTAGACTATA
TTGAGTTGGCGTGGGGTCCTCTTGATTCACCGTCTCTTTTTGTTGTGAAC
AAGATATCTGTTGTTTAGCCTTTTTTTGATTGTTTTTTTACTTGCCCGTT
TAGCCTGTATATCTGTGCGTCTAGTAGTAGTTGCTGGGCGTATCCTCGTT
GTTTCACTCACAACTATTCGACCCTTCACCATTGGGCAACGCTATGGACA
TTTTTTTTTTTTCCGTCCGAAGGGCGTGTGCTTCGGAAGTGGTGACATCA
CCGACCCGCATCTTCGTTGTACACATTTGTACGTAAATCGCGTCCTTGAG
TCTTTGACGATGGGGGCATGGGGCAGATAAATAAACACAATGAGCTACTT
TCATATCTTGAGGTACTCCGTGTTGGGCCTCGGCGTTCCCTCCCCCCCTC
CGATGACGCCGACGCCGGGCTTCGTACTGCCGTTCCTCGTGTGTTGTACT
GGCTAGGCGGCGGGTCGGGCCGTTCACCGCCGACCATTCGACTAGAGCGA
GCTAACCACTTTTGGTCTGCTTCGTGTCATAGACCACCGAAAACAACGCC
TCCACGGTTTTCGGGGCGGGGGGGGGGGTTGTCCGTGTTGTGCCCGTGGG
GAAGTATTCCTGGGAGATTTTTTCATGTTTTCGGGGAAAGGATCGAGCAA
CTGCTGGAACATGTAGGTGTAACTTGCCATTTTTGGGTCAATGGCGGTAA
ATGGGAGATAGATGTCGGGAGTTTTGACCCTTGATGAATGTCTCTTGTTC
GTGTCGCAAGTAAGTGTTGGAACTGCTTTCGTACGGCAACGTTATAGCTG
GCCTCTTCGTGCTCTCGGAGCGTTCTTGTCTACATCGACACGTGTCGTCA
CAGAAGATGTCGCGAATCGGCAAAACGACCATC
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protein sequence of EsuBft1713_7a-0001

>EsuBft1713_7 ID=EsuBft1713_7|Name=EsuBft1713_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MPPHSKKPLVLLAAALAAPLPPRARSAMIVPLIPPPYDEQFSGDATYYGV
TPDGDGNCAIRSPLPEMYDGMIPVALNDEQYADSYMCGACIEGEGSGEGE
GGDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGSSDQ
TFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGGPFDG
EQEVHTKTVLNKRRRQRVAMA
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mRNA from alignment at Scaffold_170:5636..9166+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1713_7a-0001 ID=EsuBft1713_7a-0001|Name=EsuBft1713_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3531bp|location=Sequence derived from alignment at Scaffold_170:5636..9166+ (Ectocarpus subulatus male Bft15b)
ATGCCTCCACACAGCAAGAAACCCCTCGTCCTCCTTGCCGCGGCCCTCGC
CGCCCCCCTCCCGCCGCGAGCTCGGTCGGCGATGATCGTCCCCCTCATCC
CGCCCCCCTACGACGAGCAGTTCTCCGGAGATGCCACGTACTACGGGGTC
ACCCCCGACGGGGACGGCAACTGCGCGATCCGATCCCCGCTCCCTGAGAT
GTACGACGGGATGATCCCGGTCGCCCTGAACGACGAGCAGTACGCGGACT
CGTACATGTGCGGCGCGTGCATCGAGGGGGAGGGCTCCGGGGAGGGGGAG
GGCGGGGACCCCGTGGAAGGGGCGTTCAAGGCGTACGTGACAGACAGGTC
TGGAGCCAGTAGCCTTGGCAGGGTTATTATTCGATGAAGTATGTGCAACA
TGTTGGACAATGCATGCAATCGGGGAAGTCGGGTTAGCGTTTTGGTTAGG
GATAACGGTCTACGTACCCCGTCTGGTTAGGGATAACGGTCTACGTACCC
CGTCCCTGTTCTATTTGCTCACAAACTCATACCAAGGCAGTCCTCTGGAG
CGGGGCCGGATCACGGGAAAGCTCGCACATACTTGCTGCTCTTGGATGCT
TGTGCCTGCGAGCTGTGGCTCGCGTCTGCGGGCTGTGGCTCGCCAGCTTA
GAGGATAGACGTGTTCGACTTGTTCCTTTTTAGTCGTTGCTCTGCCTGGC
ATCGGCGCTTGAGGTTGTTGCTAATGTTGTTTCACAGTATGGATCGTTCC
AGTCTCTGCTCAGTGCCTTCCGATATCCGTACTGGTCCAACTGACGCGGA
CCCCTTCCGTGGTAGCATGTAAGAGAATACAAAACCCCTTCAGTCGACGA
GCATCCTCCTTCGTAAACGGGACGATACACGATAGCAGTCACAGCGAAAA
GGCCACGACGGTGCGAAACAGGTGCCCAGAGTGCTTATTCGGCGATCTGG
ACTTTGCCGCGGACGGAGACGGTCGGTGGGACATCTCGTGGCACTTCGTC
CCCTGCGAGGGTAGCTCTGACCAGACGTTCCTCTTTGAGGGCAGCAACGA
GTTCTACTGGAAGGTGAATCGCTAGCGCAAACAGCAAAGTCGAGAGAACG
GTGCTGTGTGAGTTTGATGTTAGCAAGCCTGGGTCAAACCGGTCAGTCTG
CATGCTGCTTGGTCGAATGGTTTCGACGAATGTTCACACCGTTGTTATTG
AATTGCTAAGGCAAATGCGTGGGTCACCCGGTACATGCTTGGTCAGTGGA
TCTCGTAAATCGTTTCGCCGCTGGCGCTCAAGTTTTTTCCTGCGAAGGCC
TTAAAGAACTTCTGCCGGATAGGATAGTGTAGGCATGAACACATCCTTGG
GCAAGCAGTTCCTGTCCGACGCCCCGGTTTGCTGGTCCACACGTAAAACG
TGATGCCTAGTCTATTGCAGGCATCGAGGACTCTTTGAAAAAAGTTTCCT
CGGGTCTGCCGTGCACGCATTGCTTGCGGGGCCCCGTGACACCCCTACAC
CGACGAACCCTTCGCGCCTCTTGGTCTGCTCTCGGTATATGACACCTACA
TGCAGGCTGGCGTCAAGTTGATACTCCAGTACCCGCGGTCTCTACGTGCA
TGCGCTCATTTTGGCCGGATATGTATGCGTGGCTGTGTGTTCTTTTGCTG
TGACCTATTCGTTATATGCATCTGTACAGGAAGCTTGGTGTATGGTACGT
CCCCGGCGATCTGGGAACCCGTTGCCACTGACTGCTGCCAGCGCCGCCTT
TTGATGCTCCCTTCCCCACGGCGTCTGTTTTGGTTAGATCCAGCCCCGCG
GAGGGCGTTCGCCTGTGGAGAGGCTCTGGATCAACGGTGACGAAGCCGAA
CGCTCGGAGGATAACTTTTTCATTCTCGAGGGAGGCCCGTTCGACGGAGA
GCAAGAGGTGCACACCAAGACTGTGCTCAACAAGCGGAGAAGGCAGAGGG
TCGCCATGGCGTAGATATATCTCACCACCGAGACTGCTTTGCGGAAGAGG
AGGGGAAAAGCTCGCGAGCAAGGCTGCCTGGAACAGGAGGAGGAAGCAGA
GCGTTGCTGCTATGGAGTACCCCTGAGAAAGGGAGACAGCAGATCGTTGC
TGCCATGGTGCAGCTCACAGCCAGACCGTCTTGTGACAGTAGGAGGAAGC
GGAGCGTTGGTGCCACGATGTAGCTCACGCCAATACTGCGGAGGGAGAGG
GAAAAGCAAAGCGTGGCCATGGTGATCCTCGCAGCAATAACGTCCTGAAG
AGGGTCAGGAAGCAATAGTGTTGCTGCCTTGGAGTAGATCGTAGCAAGAC
TCAAGTACCTCTTTCCTTTCTTGGCTAGGGTCGCCTTTAACAGTTGTGCC
GGGCACTGCTGCTGTCTCGATTCCACGTTTTTGTCGAACTTTCCGATCCC
TTGCGATACGTCGTGCAGTTTTACTTGTATATTTTTATCGTGCTGTTTTA
CGTCATATTGTCGTGGGTCGTCGTGGAATCGTAACGGTGCCCCGTCATAG
CCTTAGTCTTATCCATTCTTTGATTATTTTATCACCTTCTTGGCCTGCAC
TGCAGCAGGGACTCAGAGGGAGGACACGAACATCATTTCCGGGCCCGGTT
CCAATTTGCTTTCGTCGCCACTGTCGAGCACAGGCTATTTAGACTATATT
GAGTTGGCGTGGGGTCCTCTTGATTCACCGTCTCTTTTTGTTGTGAACAA
GATATCTGTTGTTTAGCCTTTTTTTGATTGTTTTTTTACTTGCCCGTTTA
GCCTGTATATCTGTGCGTCTAGTAGTAGTTGCTGGGCGTATCCTCGTTGT
TTCACTCACAACTATTCGACCCTTCACCATTGGGCAACGCTATGGACATT
TTTTTTTTTTCCGTCCGAAGGGCGTGTGCTTCGGAAGTGGTGACATCACC
GACCCGCATCTTCGTTGTACACATTTGTACGTAAATCGCGTCCTTGAGTC
TTTGACGATGGGGGCATGGGGCAGATAAATAAACACAATGAGCTACTTTC
ATATCTTGAGGTACTCCGTGTTGGGCCTCGGCGTTCCCTCCCCCCCTCCG
ATGACGCCGACGCCGGGCTTCGTACTGCCGTTCCTCGTGTGTTGTACTGG
CTAGGCGGCGGGTCGGGCCGTTCACCGCCGACCATTCGACTAGAGCGAGC
TAACCACTTTTGGTCTGCTTCGTGTCATAGACCACCGAAAACAACGCCTC
CACGGTTTTCGGGGCGGGGGGGGGGGTTGTCCGTGTTGTGCCCGTGGGGA
AGTATTCCTGGGAGATTTTTTCATGTTTTCGGGGAAAGGATCGAGCAACT
GCTGGAACATGTAGGTGTAACTTGCCATTTTTGGGTCAATGGCGGTAAAT
GGGAGATAGATGTCGGGAGTTTTGACCCTTGATGAATGTCTCTTGTTCGT
GTCGCAAGTAAGTGTTGGAACTGCTTTCGTACGGCAACGTTATAGCTGGC
CTCTTCGTGCTCTCGGAGCGTTCTTGTCTACATCGACACGTGTCGTCACA
GAAGATGTCGCGAATCGGCAAAACGACCATC
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Coding sequence (CDS) from alignment at Scaffold_170:5636..9166+

>EsuBft1713_7a-0001 ID=EsuBft1713_7a-0001|Name=EsuBft1713_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=666bp|location=Sequence derived from alignment at Scaffold_170:5636..9166+ (Ectocarpus subulatus male Bft15b)
ATGCCTCCACACAGCAAGAAACCCCTCGTCCTCCTTGCCGCGGCCCTCGC
CGCCCCCCTCCCGCCGCGAGCTCGGTCGGCGATGATCGTCCCCCTCATCC
CGCCCCCCTACGACGAGCAGTTCTCCGGAGATGCCACGTACTACGGGGTC
ACCCCCGACGGGGACGGCAACTGCGCGATCCGATCCCCGCTCCCTGAGAT
GTACGACGGGATGATCCCGGTCGCCCTGAACGACGAGCAGTACGCGGACT
CGTACATGTGCGGCGCGTGCATCGAGGGGGAGGGCTCCGGGGAGGGGGAG
GGCGGGGACCCCGTGGAAGGGGCGTTCAAGGCGTACGTGACAGACAGGTG
CCCAGAGTGCTTATTCGGCGATCTGGACTTTGCCGCGGACGGAGACGGTC
GGTGGGACATCTCGTGGCACTTCGTCCCCTGCGAGGGTAGCTCTGACCAG
ACGTTCCTCTTTGAGGGCAGCAACGAGTTCTACTGGAAGATCCAGCCCCG
CGGAGGGCGTTCGCCTGTGGAGAGGCTCTGGATCAACGGTGACGAAGCCG
AACGCTCGGAGGATAACTTTTTCATTCTCGAGGGAGGCCCGTTCGACGGA
GAGCAAGAGGTGCACACCAAGACTGTGCTCAACAAGCGGAGAAGGCAGAG
GGTCGCCATGGCGTAG
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