EsuBft1713_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1713_6a-0001
Unique NameEsuBft1713_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_170contigScaffold_170:26038..30063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1713_6
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length81
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000440.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_6aEsuBft1713_6aEctocarpus subulatus male Bft15bgeneScaffold_170 26038..30063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_6a-0001EsuBft1713_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_170 26038..29928 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_6a-0001-exonagat-exon-45675Ectocarpus subulatus male Bft15bexonScaffold_170 26038..26245 -
EsuBft1713_6a-0001-exonagat-exon-45673Ectocarpus subulatus male Bft15bexonScaffold_170 26548..26630 -
EsuBft1713_6a-0001-exonagat-exon-45674Ectocarpus subulatus male Bft15bexonScaffold_170 27512..27675 -
EsuBft1713_6a-0001-exonagat-exon-45676Ectocarpus subulatus male Bft15bexonScaffold_170 28593..28712 -
EsuBft1713_6a-0001-exonEsuBft1713_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_170 29829..30063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_6a-0001-cdsEsuBft1713_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_170 26038..26245 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1713_6a-0001-exonagat-five_prime_utr-3855Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_170 29929..30063 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1713_6a-0001 ID=EsuBft1713_6a-0001|Name=EsuBft1713_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=810bp|location=Sequence derived from alignment at Scaffold_170:26038..30063- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTACTTCTTGGAACAACACCAGGCACCCGACACCATCCTGTTCTATTCG
TGGATCTCTGGAGTTGGGAGATCTTGGGGCCCTTCGTTCCAAAATTCGAT
TGTTGTTACCGATTTTGGTTTCTGCGTCTCTCAAGATGTCCATGTTGCAA
TGGAGCGTCCTTCTGGGTGTGCTACACAAGGCGGCTGCTTTCGTCTTGTT
GCCACCTGCTGCCGGGCCTACTGCATCAAGCTCTTGGGTACGGAGCACGT
GCGGATCGAGCGCTAGCAGCACCTCTGCTTGGACGACATACCCGACATGC
ATGGTCAGGGGGCAGGCTGCAGCTGTGGCGGGTGCTGCTCGCGCGTCGCC
GCCGGGAGGAGCAACGGGGCGGACGTCGACGATGAGAAAGTCTTCGACAC
TGGAACAGGACGGCGTCGAAGACAACGAAGGAGCGGTTGACTTCTCCTCC
GTAGGGCCCCCACCCCCTGCTCCCGTGGTGGAGGAGGAAGAAGAGGAGGA
CGATGGCGAGCCTGATCCGGCGAAGGACCTGGCGGAGGTGGTGATGCAAG
CCATCTTCGAGTGGAACACCAAGAATGATGTTGTCGATGCCGAGCGACCC
ACGGTGGACCTGGATGCGGTGGTGGAAGAGACGTACCAGGAGGCGATGCG
GTTGTACGAATACTACGATCAGATGAACGAAGAGATCGCCAAGCAGGAGC
GGGAGGAAGCGGAGAAGGCCAGAGAGGCGGAGGGACTGCCGGTGGTGATG
GATGCCGAACTGGCGGAGGACGAAGAGGTTGGCAATGACGTCATGTTTTT
GGTGCAGTGA
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protein sequence of EsuBft1713_6a-0001

>EsuBft1713_6 ID=EsuBft1713_6|Name=EsuBft1713_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=224bp
MSMLQWSVLLGVLHKAAAFVLLPPAAGPTASSSWVRSTCGSSASSTSAWT
TYPTCMVRGQAAAVAGAARASPPGGATGRTSTMRKSSTLEQDGVEDNEGA
VDFSSVGPPPPAPVVEEEEEEDDGEPDPAKDLAEVVMQAIFEWNTKNDVV
DAERPTVDLDAVVEETYQEAMRLYEYYDQMNEEIAKQEREEAEKAREAEG
LPVVMDAELAEDEEVGNDVMFLVQ
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mRNA from alignment at Scaffold_170:26038..30063-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1713_6a-0001 ID=EsuBft1713_6a-0001|Name=EsuBft1713_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4026bp|location=Sequence derived from alignment at Scaffold_170:26038..30063- (Ectocarpus subulatus male Bft15b)
GCTACTTCTTGGAACAACACCAGGCACCCGACACCATCCTGTTCTATTCG
TGGATCTCTGGAGTTGGGAGATCTTGGGGCCCTTCGTTCCAAAATTCGAT
TGTTGTTACCGATTTTGGTTTCTGCGTCTCTCAAGATGTCCATGTTGCAA
TGGAGCGTCCTTCTGGGTGTGCTACACAAGGCGGCTGCTTTCGTCTTGTT
GCCACCTGCTGCCGGGCCTACTGCATCAAGCTCTTGTGAGACGAAGGGGG
CCAGATTTTCCGTGTTGGTTGGTGTTTTGAGATGCTCGTCTCCCCCTGTT
TTGCTGAGCACGCGTGATGTACACGTCAAGCGTAGTAACCGAAGGGTACC
CTGATCATGTGTCTCTCCCATGTGTAGGCTATTATAGGCGGCAGGCAGTC
TCCAACCGGCGCCTGTTGCCTTATTTAGCACCGTCATCACCATGTGCTAG
GCCCTTCTTTGGTTGTATGGCCGCTAGCTTGCGATTGCAACGTGTTGCCC
TTGGCCTTCCTTTACATTGCAACAGAATCTCGCGCTCGTGGCCCGAGCCT
GGGTGTGTTTTCTCCAAGTTCAGTTCATGTGTGTGTACGGATCGACCACG
ACCGCCTTCACCCCAACCAGCTGGTATATCCGCGCCCAGGCTTCGCGGTC
ATGTGACATTCCCGCTCCATGTCGCGCTTTGTCTCCCGGTACACGTGATG
CTGGGCTCATGGTAGTAATAACGACCCTCTGGTTGACGTAGGGCTGCATC
CTCGGCGGTCCCGCTCTCCGCACGCACACATCCCCAACAGGGGACGCAGG
ACACTCGAATTTGTACTACTGCTGTTTCCTGTTCCTACAAAAGCCCATCC
CATGCGTCCGAGTAGCTGAGGGAAGAGCTTGCACTCTGAGAACACTCTGC
CAAAATTTGACACGCGATAGAAAACACGTGCTGTTGTGTGCTTGTTTGAG
TAACTTGCTTGCTTGTCTTTCAAATCGGAACGCCTCGCAGGATGGGCAAT
TGGCGCGGCGGAAAACACTACACTACGAAGGGTCGCTGAGAGCGTCCGCT
TCTTTTCCTCTCGATTTGTGCAAGTCTGTTCCTCGGCGCCCTAGTATCGA
GCCCGAAACGCCTGTCGTCATTTTTTTTTTTTCCCTATTCCAAAAACGAC
CCGTGTTCAGTTCTATCCGAAGATGAGAGTCAGGATAACTTTCGGTTGAT
TCATTAGTGTTTTTTTATTACCAAACTCCGTTTCTGTCAGTCTACCAGTA
GCATATCTACCTCCTCCTGTGGGTTACAGCAGTCTCGAGCAAGACCGGCA
GTTGGGTGGCAATCTTGTGTCCCGACAGTTTTCGGTTTGCTCGACTCGCA
GGGGTACGGAGCACGTGCGGATCGAGCGCTAGCAGCACCTCTGCTTGGAC
GACATACCCGACATGCATGGTCAGGGGGCAGGCTGCAGCTGTGGCGGGTG
CTGCTCGCGCGTCGCCGCCGGGTAGGCCCGCCTCTACCGCGAATATGAGG
AGGAGGCCAACGACTCTCGCTGCCGGGGTCGATGGGTGTTTCCACGCATC
CCCTGGGAGGCGTTCGGGGGGGAGTGGAGAAGGCGGAAGACGAAAACTGG
GTGAGGAAATATGAACGGCGGCAGCCTTTTGCTATATGTAAGGCATCGAC
TGAGGACTGTACGTCCGATGGCAGTTGTTGTTTCGTCTGCTCATAAAGCA
CGCGGTGTGCACTTGGCCAACGCGGCAACAAGGGAGCCTTCGCGTGTCGA
TAGGTGACAGATACCGCACCCGCTGGACCGATTTACAAAGCTCGACTACT
TCTCGAGAAAAGGTGATGTCTTCGTTTTGGAAAGCTCTCAATGGGGCTGT
TCCAACGCCGCCACCACTCTCACAGCATAGTATGCCTGCTGGGGTCGGAT
TCTCCGATAAGCTGCTGTTGCTAAGCACGTTGTGCGGTTGGCAGTTGGAG
AATGCGTTGTGGCTTTTGACTATCCCAACATGACAGCTGTAGGCAGCGAC
AAGAGATATCCGTCAAAGTGTGGAGGAGGACTGGTTTGTGCTCCGATCAT
CTCGACATCGCTTCCTCTAGGTGCTGTTGTGCTTGCCGGTGTTTGCATTT
CGTACGCATTTCTTCATGCATGACCGTAGGCACGAAGCGATTTTGGTATA
CATTTGTTGTGGCCTACTCACTGCCCGAAAAACTATTATGCAACTGCTCC
TGTACCCATGTGCGGGTTTGGAATTTTCTTGCCCCTTTTTTTTTGTGGGT
GTGTTTTTTGTCTCTTGGACGGGAACGTTTTCTGGCCAAGCATAGGAGGA
GGGACAACTTTGAAGCAAATGTTGAAAATATCTCGCTCTTGCTCGTTTTG
TTCTTTGCGACGGGAACGTTTCCTCCGTGGCTACGTAGGAGGAGCAACGG
GGCGGACGTCGACGATGAGAAAGTCTTCGACACTGGAACAGGACGGCGTC
GAAGACAACGAAGGAGCGGTTGACTTCTCCTCCGTAGGGCCCCCACCCCC
TGCTCCCGTGGTGGAGGAGGAAGAAGAGGAGGACGATGGCGAGCCTGATC
CGGTGAGCGAATGTGTGTCTTGCTCGGTTGTCGCCGTTGCAATGTTGTGG
CTCTGTTGTATTGTGCTGATGCGGTGAGAGAGAATTTGTCTTTTGTTACG
GTGGTCGTCGTTGTGGTGTAGTATAGTTGTGTTGTACTGTACTATCCTGA
TCCGGAGAAAGAATTTGTCTCTTGGTACGGTTGTCGCTGTTGTCATGTTG
TGGGGCTCTTTGTATTTTATTTTGATCCGCTGAGAGAATTCGTCTCTTGG
GTTGTCGTCGTGGTGATGGTGTGGGTCTGTTGTTTTGTACTTCTGGTTGT
GTAGATTTGTTGTATTATGCTTGTTGGTTTGTATTTGCTGTTGTGATGGT
GGTGATGGTGATGTCGCGTTGTTGGTTTTGTGCCCGCTGTCGCTCCTTGG
TGTTGTGGCCATGGCTGCCGTTGATATGGGTGTTTTGCCCCGCCAATGTG
ATTGCGTAGTACCAATGAAGGGCGAGGGCACACACCGGCATGGCGGTGCT
ATTTTTGCTTGCATATTTTTCGGGTGATGTGCGCCTCATTTTGGCGTTTT
TGGCGGAACTTTGTTTTTTTGTTTTGTGTAAATCGAGTGAACTATGTTTC
CATATGTGAGCACAAGCGCCCCTACGTCTGCTTGCCTTGCCTACATGCTA
CAGCCACCGCTGCTGCCGCTGCCGCTGCGAGCGGTCGCTCTGTTGGCGTT
TTGTCCTTGCTGTTGGCACTGTTGTCACGCATGTCTATGCCTGCTGTTGT
TGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGTTGTG
AGCTTCTGTTCTTCGATATGGCGGCCGTGTTTCATCTCGTTTAGTGCACG
GTGGTCCGTGAACCGGTTGGCTGTTTTTGACAGGCGAAGGACCTGGCGGA
GGTGGTGATGCAAGCCATCTTCGAGTGGAACACCAAGAATGATGTTGTCG
ATGCCGAGCGACCCACGTGAGGATCATGATGATCTTTCTTCTATTGTTTG
TTTGCGTGACGCGCCATCGTCTGAGCAATTGGTGCTGAAGTCGTAAGTAT
TAGCTTCGGCGTAAGAAATGTGAGGGTTCATTGTTCACCAAGTCCTTGTA
CAAGAAAGAAGTTGTGAGTCCTACCCACACGAGCATATTTTCATTTGCTG
CTGGCTCCCTCTCTGGTCAAGTATGGAGAGCGAGAGGGTCTGCGCAAGCT
ATGATTTGCTTTTGGTGCGGTCTGCATGATGCGAGTATTTGCACCTCCTT
GCCACCTGTCTCGAGCAGGGTGGACCTGGATGCGGTGGTGGAAGAGACGT
ACCAGGAGGCGATGCGGTTGTACGAATACTACGATCAGATGAACGAAGAG
ATCGCCAAGCAGGAGCGGGAGGAAGCGGAGAAGGCCAGAGAGGCGGAGGG
ACTGCCGGTGGTGATGGATGCCGAACTGGCGGAGGACGAAGAGGTTGGCA
ATGACGTCATGTTTTTGGTGCAGTGA
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Coding sequence (CDS) from alignment at Scaffold_170:26038..30063-

>EsuBft1713_6a-0001 ID=EsuBft1713_6a-0001|Name=EsuBft1713_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=675bp|location=Sequence derived from alignment at Scaffold_170:26038..30063- (Ectocarpus subulatus male Bft15b)
ATGTCCATGTTGCAATGGAGCGTCCTTCTGGGTGTGCTACACAAGGCGGC
TGCTTTCGTCTTGTTGCCACCTGCTGCCGGGCCTACTGCATCAAGCTCTT
GGGTACGGAGCACGTGCGGATCGAGCGCTAGCAGCACCTCTGCTTGGACG
ACATACCCGACATGCATGGTCAGGGGGCAGGCTGCAGCTGTGGCGGGTGC
TGCTCGCGCGTCGCCGCCGGGAGGAGCAACGGGGCGGACGTCGACGATGA
GAAAGTCTTCGACACTGGAACAGGACGGCGTCGAAGACAACGAAGGAGCG
GTTGACTTCTCCTCCGTAGGGCCCCCACCCCCTGCTCCCGTGGTGGAGGA
GGAAGAAGAGGAGGACGATGGCGAGCCTGATCCGGCGAAGGACCTGGCGG
AGGTGGTGATGCAAGCCATCTTCGAGTGGAACACCAAGAATGATGTTGTC
GATGCCGAGCGACCCACGGTGGACCTGGATGCGGTGGTGGAAGAGACGTA
CCAGGAGGCGATGCGGTTGTACGAATACTACGATCAGATGAACGAAGAGA
TCGCCAAGCAGGAGCGGGAGGAAGCGGAGAAGGCCAGAGAGGCGGAGGGA
CTGCCGGTGGTGATGGATGCCGAACTGGCGGAGGACGAAGAGGTTGGCAA
TGACGTCATGTTTTTGGTGCAGTGA
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