EsuBft1703_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1703_6a-0001
Unique Name	EsuBft1703_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:1177104..1178195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1703_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	109
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_6a	EsuBft1703_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 1177104..1178195 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_6a-0001-exon	EsuBft1703_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1177104..1178195 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_6a-0001-cds	EsuBft1703_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 1177104..1177643 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_6a-0001-exon	agat-three_prime_utr-5859	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 1177644..1178195 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_6a-0001	EsuBft1703_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 1177104..1177643 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:1177104..1178195+
coding sequence from alignment at Scaffold_129:1177104..1178195+

spliced messenger RNA

>EsuBft1703_6a-0001 ID=EsuBft1703_6a-0001|Name=EsuBft1703_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1092bp|location=Sequence derived from alignment at Scaffold_129:1177104..1178195+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCAGCGAATCGCCACCGTCGAAGCCGGGGTTGGGGCCTTGGATCA
GAGGTTTCGAGGTATCGAGCAACGGCTGGACCAAATGTTGGGCGTGTTCG
AGAGGTTTGCCGGAGGGGCGGCGGCGGCTGCACCAACCTTTGCCCCTTCG
TTCCCCGCGGCTCCTGCTCCTGCGTCCCCCGCCGCTCCTGCTCCTGCGTT
CCCCGCCCCCAGGGGGACGGGGAAGTATTCCAACGGTAGGGGATCTACGC
CTCCGGCACCGACCCCAGCTGCCGCCTCGGCGGTAGTTTCGGGCACTTCT
TCTCGTCCCGCCGCAGTCGGGGTTGACGGCCCAGGCGAAGGACTTGGGCC
TGCGGCCCGGACGAATGCGCGCCTCGAGGTTGGAGGGGTGACCGGACAGG
CACCAGCTGAACGGCGAATCCGCAGTGACGACGTCCGCCTTGCGGGTTTA
TCGGGTCGCGGGGCGTCGTCATCCTCCGCTGCACCCCTGGGAGCTCGTCC
GTCTGGCGGGTTAGCTTCGAGGCCCCCATGGAAGCCTTGACGAAGATGCT
GTCGCGACCGTGGTAGTGGAATGCGGGTCGGGTCTGCGCCATTATGCCTT
CGCCGTCAGGGGCGCAGCTCCCGCGCTTCCATGGTTTGTTGCGTACGGCG
GCGTGGTTGATTGCGGATTGTCGTGTCCAAGCATGTGTGTGTGTTTTTTT
TTCTTCGTGTCGTCGTGTGCCGTTCGTTTCTTCTCCATGCCTCAAGTAAT
CGTTGTCGGCGAGAAGGGGTCGCATGGACTGACCGTTGTTTTCTCGTTTT
CTTTTCAGCGACCACCCTCCAATGTACCTGCTATCGACACCACCTGTCGC
TGGCGCCGGATGCGCTTTTGTTTTTCGCGTGTTTTTTTTGCAGCTCGCTG
GAAAATGTATTCGGGCGCGTTTTTTTTGTTGTTTTCATCGGTGTGACCGT
TTTTTTTTTCTTGTCCAGGTCGGTGAAGAGTGTTGGACTCGGGCGACAAT
TGTATTTTTAGTATGTCTTTTCCGATTATTGTTGTGCCCAACTCTCGGGA
AACTTTTCGTTTATTTTCTTTTCATTTCTTTCGATGCATGAT

protein sequence of EsuBft1703_6a-0001

>EsuBft1703_6 ID=EsuBft1703_6|Name=EsuBft1703_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=179bp
MHQRIATVEAGVGALDQRFRGIEQRLDQMLGVFERFAGGAAAAAPTFAPS
FPAAPAPASPAAPAPAFPAPRGTGKYSNGRGSTPPAPTPAAASAVVSGTS
SRPAAVGVDGPGEGLGPAARTNARLEVGGVTGQAPAERRIRSDDVRLAGL
SGRGASSSSAAPLGARPSGGLASRPPWKP

mRNA from alignment at Scaffold_129:1177104..1178195+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1703_6a-0001 ID=EsuBft1703_6a-0001|Name=EsuBft1703_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1092bp|location=Sequence derived from alignment at Scaffold_129:1177104..1178195+ (Ectocarpus subulatus male Bft15b)
ATGCACCAGCGAATCGCCACCGTCGAAGCCGGGGTTGGGGCCTTGGATCA
GAGGTTTCGAGGTATCGAGCAACGGCTGGACCAAATGTTGGGCGTGTTCG
AGAGGTTTGCCGGAGGGGCGGCGGCGGCTGCACCAACCTTTGCCCCTTCG
TTCCCCGCGGCTCCTGCTCCTGCGTCCCCCGCCGCTCCTGCTCCTGCGTT
CCCCGCCCCCAGGGGGACGGGGAAGTATTCCAACGGTAGGGGATCTACGC
CTCCGGCACCGACCCCAGCTGCCGCCTCGGCGGTAGTTTCGGGCACTTCT
TCTCGTCCCGCCGCAGTCGGGGTTGACGGCCCAGGCGAAGGACTTGGGCC
TGCGGCCCGGACGAATGCGCGCCTCGAGGTTGGAGGGGTGACCGGACAGG
CACCAGCTGAACGGCGAATCCGCAGTGACGACGTCCGCCTTGCGGGTTTA
TCGGGTCGCGGGGCGTCGTCATCCTCCGCTGCACCCCTGGGAGCTCGTCC
GTCTGGCGGGTTAGCTTCGAGGCCCCCATGGAAGCCTTGACGAAGATGCT
GTCGCGACCGTGGTAGTGGAATGCGGGTCGGGTCTGCGCCATTATGCCTT
CGCCGTCAGGGGCGCAGCTCCCGCGCTTCCATGGTTTGTTGCGTACGGCG
GCGTGGTTGATTGCGGATTGTCGTGTCCAAGCATGTGTGTGTGTTTTTTT
TTCTTCGTGTCGTCGTGTGCCGTTCGTTTCTTCTCCATGCCTCAAGTAAT
CGTTGTCGGCGAGAAGGGGTCGCATGGACTGACCGTTGTTTTCTCGTTTT
CTTTTCAGCGACCACCCTCCAATGTACCTGCTATCGACACCACCTGTCGC
TGGCGCCGGATGCGCTTTTGTTTTTCGCGTGTTTTTTTTGCAGCTCGCTG
GAAAATGTATTCGGGCGCGTTTTTTTTGTTGTTTTCATCGGTGTGACCGT
TTTTTTTTTCTTGTCCAGGTCGGTGAAGAGTGTTGGACTCGGGCGACAAT
TGTATTTTTAGTATGTCTTTTCCGATTATTGTTGTGCCCAACTCTCGGGA
AACTTTTCGTTTATTTTCTTTTCATTTCTTTCGATGCATGAT

Coding sequence (CDS) from alignment at Scaffold_129:1177104..1178195+

>EsuBft1703_6a-0001 ID=EsuBft1703_6a-0001|Name=EsuBft1703_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=540bp|location=Sequence derived from alignment at Scaffold_129:1177104..1178195+ (Ectocarpus subulatus male Bft15b)
ATGCACCAGCGAATCGCCACCGTCGAAGCCGGGGTTGGGGCCTTGGATCA
GAGGTTTCGAGGTATCGAGCAACGGCTGGACCAAATGTTGGGCGTGTTCG
AGAGGTTTGCCGGAGGGGCGGCGGCGGCTGCACCAACCTTTGCCCCTTCG
TTCCCCGCGGCTCCTGCTCCTGCGTCCCCCGCCGCTCCTGCTCCTGCGTT
CCCCGCCCCCAGGGGGACGGGGAAGTATTCCAACGGTAGGGGATCTACGC
CTCCGGCACCGACCCCAGCTGCCGCCTCGGCGGTAGTTTCGGGCACTTCT
TCTCGTCCCGCCGCAGTCGGGGTTGACGGCCCAGGCGAAGGACTTGGGCC
TGCGGCCCGGACGAATGCGCGCCTCGAGGTTGGAGGGGTGACCGGACAGG
CACCAGCTGAACGGCGAATCCGCAGTGACGACGTCCGCCTTGCGGGTTTA
TCGGGTCGCGGGGCGTCGTCATCCTCCGCTGCACCCCTGGGAGCTCGTCC
GTCTGGCGGGTTAGCTTCGAGGCCCCCATGGAAGCCTTGA