EsuBft1703_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1703_5a-0001
Unique NameEsuBft1703_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:1179183..1181226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G529
ProteomeIdEsuBft1703_5
Protein domainsPTHR22930
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length90
Hectar predicted targeting categoryother localisation
Evalue7.74e-109
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1703_5aEsuBft1703_5aEctocarpus subulatus male Bft15bgeneScaffold_129 1179183..1181226 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1703_5a-0001-exonagat-exon-31213Ectocarpus subulatus male Bft15bexonScaffold_129 1179183..1179299 -
EsuBft1703_5a-0001-exonagat-exon-31212Ectocarpus subulatus male Bft15bexonScaffold_129 1179643..1180114 -
EsuBft1703_5a-0001-exonEsuBft1703_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 1180913..1181226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1703_5a-0001-cdsEsuBft1703_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 1179183..1179299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1703_5a-0001EsuBft1703_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 1179183..1181226 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1703_5a-0001 ID=EsuBft1703_5a-0001|Name=EsuBft1703_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=903bp|location=Sequence derived from alignment at Scaffold_129:1179183..1181226- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGACTGAACCGCGGGAGAGTGCGCTACGGGCGATATCAGTCATG
CTCGCAAATGACCCTCCTAGCTTCGATTGGTGTCGTAGCTGGGGAAGAGG
ATCTGTGCATGCTGTGGTGTGTCTGCTGCTTGTATGAGTGGCGTCGGTAT
CATGAGCTACTTGCCCCGACCACGCTTGAAGGCGTGTTTCCGAACCTCAA
CTTCTTCGAAGCTATCGGGGGCTTTGACTTCAAGGAGGTATTTCGCTTCG
AGAAACCGCATTTCTTGCAGCTTCTACGAAGGCTGGAGCTTCCGGACAGC
TCCGAAGTTTCGAGAGGGGGGTATGGCGTGACGAGGGTGCCAGCGGATGT
TGCCCTCGCCCTGACACTGCTATGGAGGCTGTCCGCACCGACCACCTTGG
TCCGGGATAGATCATTCTTGGGCATGTCCGAGACGCTGATTTGCGAGGTG
TTCAACCTTACGATAGAGGCGATTTACGAGCGTTGGGGGCATTTGGTGGA
GCACTTGCAGGTTGATGCTATTCTCCCGAAGATCGATACATTTTGTGAGG
CCATTCACGCCAAGGGGGCACCGCTCCCACGTTGTTGTTTTTTTTTAGAT
GGTACTATTCGTAAGATTGCTCGACCTGTTCGTTGGCAGCGTATCTATTA
TAATGGTTGGAAGTGTGTCCACGCCTTGAAATACCAGGCGGTTGATTCGC
CGGACGGCATAATCAGGCAACTCTGGGGCCCCACGGTAGGGCGTAGGCAC
GATGTGACGTTGCTTGGACAGAGTGCACTCTTAAGCTACAAGGTAGCTGG
CATCCTGACGAACTGCCAATGCTGCTTCTGCCCCAACCAAACGTCGACGT
TCTTTGGTGTGCCTCCACCCCCTCTCCGCGCCTACCTTGTTGAAGAGGGT
TGA
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protein sequence of EsuBft1703_5a-0001

>EsuBft1703_5 ID=EsuBft1703_5|Name=EsuBft1703_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MARLNRGRVRYGRYQSCSQMTLLASIGVVAGEEDLCMLWCVCCLYEWRRY
HELLAPTTLEGVFPNLNFFEAIGGFDFKEVFRFEKPHFLQLLRRLELPDS
SEVSRGGYGVTRVPADVALALTLLWRLSAPTTLVRDRSFLGMSETLICEV
FNLTIEAIYERWGHLVEHLQVDAILPKIDTFCEAIHAKGAPLPRCCFFLD
GTIRKIARPVRWQRIYYNGWKCVHALKYQAVDSPDGIIRQLWGPTVGRRH
DVTLLGQSALLSYKVAGILTNCQCCFCPNQTSTFFGVPPPPLRAYLVEEG
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mRNA from alignment at Scaffold_129:1179183..1181226-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1703_5a-0001 ID=EsuBft1703_5a-0001|Name=EsuBft1703_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2044bp|location=Sequence derived from alignment at Scaffold_129:1179183..1181226- (Ectocarpus subulatus male Bft15b)
ATGGCGCGACTGAACCGCGGGAGAGTGCGCTACGGGCGATATCAGTCATG
CTCGCAAATGACCCTCCTAGCTTCGATTGGTGTCGTAGCTGGGGAAGAGG
ATCTGTGCATGCTGTGGTGTGTCTGCTGCTTGTATGAGTGGCGTCGGTAT
CATGAGCTACTTGCCCCGACCACGCTTGAAGGCGTGTTTCCGAACCTCAA
CTTCTTCGAAGCTATCGGGGGCTTTGACTTCAAGGAGGTATTTCGCTTCG
AGAAACCGCATTTCTTGCAGCTTCTACGAAGGCTGGAGCTTCCGGACAGC
TCCGAAGTTTCGAGGTGAGCATGTGGCACGGAGAGTCGCAACACAGCACA
AGTGGTCGCCATATCCTTAGGGAAGGGCGGGGTTAGAGGCTGCACGCTAC
ATGTAGATACGACTTGGGGCTTCTTTCTGGGCTGCAGCAGTCCTGGAGAT
GCGCCCTGAATCCGACAGGTAGGCTTGTTGCTGGTGTTGTCCCGCTGTTC
GAAAAAAAAACACGCGTACACACATACCTCAGGCAGGAACCGCAGGAGGG
GGTCCAGCCCCCCCCTCCTATGTGATCCCGTTTGGGTCGTCTAGCTATTA
TATATATTAATAGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGACGACA
GAGTCCAATGATGGGAGAAAAAACAACAAAACATAAGTCTACACGAATTA
AAAATATATGCGCAGACGAGCGAGGTCACGAACACACGTAGCACCAACGC
ACGCTTCTCTAGAGCAGGAAGAAGGTGTTAGACTTGCCAAATCCGATAGC
CCTTTTGGCGGCGGCAGCGGAGGGTTACGTCTAACCATCATGACCATGCT
GTATCTTGAGGGAACTTATTGCTGTTGCGCTCGTAGTACGCAACAGCGAG
TGAGGATCGCGCACCTGCTAATGTACAGCGCATCAAGTAAGGTAGCGGTA
CCTTTGAAGAACGTGCTTTACGGTGGTCGTTGTTTTATGTACACCGATTT
TCTTCACGTCTGATTAGAAACCGTGGAGCCACGTCTCGCTGTTAGTCCTA
AAGCCTGCCTTACCCCTCCACCATTGTGTCCTCCCGTCACAACCGCTCGT
TCGTGGTATCAGAGGGGGGTATGGCGTGACGAGGGTGCCAGCGGATGTTG
CCCTCGCCCTGACACTGCTATGGAGGCTGTCCGCACCGACCACCTTGGTC
CGGGATAGATCATTCTTGGGCATGTCCGAGACGCTGATTTGCGAGGTGTT
CAACCTTACGATAGAGGCGATTTACGAGCGTTGGGGGCATTTGGTGGAGC
ACTTGCAGGTTGATGCTATTCTCCCGAAGATCGATACATTTTGTGAGGCC
ATTCACGCCAAGGGGGCACCGCTCCCACGTTGTTGTTTTTTTTTAGATGG
TACTATTCGTAAGATTGCTCGACCTGTTCGTTGGCAGCGTATCTATTATA
ATGGTTGGAAGTGTGTCCACGCCTTGAAATACCAGGCGGTTGATTCGCCG
GACGGCATAATCAGGCAACTCTGGGGCCCCACGGTAGGGCGTAGGCACGA
TGTGACGTTGCTTGGACAGAGTGCACTCTTAAGCGTTTGAGAGCAGTCGT
TCAATGACGAGATGGGNTCCCGAAGATCGATACATTTTGTGAGGCCATTC
ACGCCAAGGGGGCACCGCTCCCACGTTGTTGTTTTTTTTTAGATGGTACT
ATTCGTAAGATTGCTCGACCTGTTCGTTGGCAGCGTATCTATTATAATGG
TTGGAAGTGTGTCCACGCCTTGAAATACCAGGCGGTTGATTCGCCGGACG
GCATAACGAGCGGTTGTAACCGGAGGACACCATGGTGGAGGGGTAGGGCA
GGCTTTAGTACTTACAGCGAGAGGTGGCTCCACGGTTTCTAATCAGACGT
GTAGAAAATCGGTGTGCATANAAGCAGTACAAGGTAGCTGGCATCCTGAC
GAACTGCCAATGCTGCTTCTGCCCCAACCAAACGTCGACGTTCTTTGGTG
TGCCTCCACCCCCTCTCCGCGCCTACCTTGTTGAAGAGGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_129:1179183..1181226-

>EsuBft1703_5a-0001 ID=EsuBft1703_5a-0001|Name=EsuBft1703_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_129:1179183..1181226- (Ectocarpus subulatus male Bft15b)
ATGGCGCGACTGAACCGCGGGAGAGTGCGCTACGGGCGATATCAGTCATG
CTCGCAAATGACCCTCCTAGCTTCGATTGGTGTCGTAGCTGGGGAAGAGG
ATCTGTGCATGCTGTGGTGTGTCTGCTGCTTGTATGAGTGGCGTCGGTAT
CATGAGCTACTTGCCCCGACCACGCTTGAAGGCGTGTTTCCGAACCTCAA
CTTCTTCGAAGCTATCGGGGGCTTTGACTTCAAGGAGGTATTTCGCTTCG
AGAAACCGCATTTCTTGCAGCTTCTACGAAGGCTGGAGCTTCCGGACAGC
TCCGAAGTTTCGAGAGGGGGGTATGGCGTGACGAGGGTGCCAGCGGATGT
TGCCCTCGCCCTGACACTGCTATGGAGGCTGTCCGCACCGACCACCTTGG
TCCGGGATAGATCATTCTTGGGCATGTCCGAGACGCTGATTTGCGAGGTG
TTCAACCTTACGATAGAGGCGATTTACGAGCGTTGGGGGCATTTGGTGGA
GCACTTGCAGGTTGATGCTATTCTCCCGAAGATCGATACATTTTGTGAGG
CCATTCACGCCAAGGGGGCACCGCTCCCACGTTGTTGTTTTTTTTTAGAT
GGTACTATTCGTAAGATTGCTCGACCTGTTCGTTGGCAGCGTATCTATTA
TAATGGTTGGAAGTGTGTCCACGCCTTGAAATACCAGGCGGTTGATTCGC
CGGACGGCATAATCAGGCAACTCTGGGGCCCCACGGTAGGGCGTAGGCAC
GATGTGACGTTGCTTGGACAGAGTGCACTCTTAAGCTACAAGGTAGCTGG
CATCCTGACGAACTGCCAATGCTGCTTCTGCCCCAACCAAACGTCGACGT
TCTTTGGTGTGCCTCCACCCCCTCTCCGCGCCTACCTTGTTGAAGAGGGT
TGA
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