EsuBft1703_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1703_4a-0001
Unique Name	EsuBft1703_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:1183292..1186998 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1703_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	189
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_4a	EsuBft1703_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 1183292..1186998 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_4a-0001	EsuBft1703_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 1186280..1186998 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_4a-0001-exon	agat-exon-31210	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1183292..1183700 -
EsuBft1703_4a-0001-exon	agat-exon-31211	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1184969..1186447 -
EsuBft1703_4a-0001-exon	EsuBft1703_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1186996..1186998 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_4a-0001-exon	agat-three_prime_utr-5857	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 1183292..1183700 -
EsuBft1703_4a-0001-exon	agat-three_prime_utr-5858	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 1184969..1186279 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_4a-0001-cds	EsuBft1703_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 1186280..1186447 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:1183292..1186998-
coding sequence from alignment at Scaffold_129:1183292..1186998-

spliced messenger RNA

>EsuBft1703_4a-0001 ID=EsuBft1703_4a-0001|Name=EsuBft1703_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1891bp|location=Sequence derived from alignment at Scaffold_129:1183292..1186998- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGTTGTCGGATCGTGGCTTCAACGCTCTGGCATTCGACCCTCT
TCAGCGTCTGGGCGTACGAGAGCTGTCGGTAGATGTCTTTCTTGCGCTTG
TACCCGATGACTCGAAGGAGCAGTCGATGTTGTATCGACCGCAGCGTCTG
ATAGTGGCCGCTGAGTGGTGACCATGCCATGCAGCCATACAGCAGTGCCT
CCATCTCCTCCGCCTGGAGCAGGCGGATCTTGAGTCGGAATGACGCTTTC
GGTCTGTCGAAGAGCTCCCGGCCATATCGCCTGAGGCACGCCCACGCTCC
TCTGCTCCTGTAGTTGATCTCCCGGGGGTGAGGTCGCCATGTTCGTTGAC
GAGGCCACAGAGGCACCGGAACCCGGTCGTCTGGGCGTATTTCTGCCCCG
CGGCTTCGATGGTCAGCGGTGGAGGCGGGGGGTGCTGTGATGTTGTCGTC
GGCTTGTCCTTCGCGCGCATCAGGAGCGTCTCCGTCTTGTTCTCCGACAC
CGTCAGCCCGAACTCCCCGAACACCTCAACGATGATGGTCATCATTCTCG
CCAGTCCTTCTGCAGACCTCGAAACGACGCCGGTATCATCGGCATACAGC
ATCCCCCATACTGCCCTCCCCCCCGGTGTTTAGGTCAATGGTGTAACGAC
TACGGCATGCACGATTATGAGTACACCCCCCTCTCCCCCCCCATTCTAGA
CTCAAGGGGGTTGGCGCTGTTGGCAAAGCGATGTAAAACACGCCACCCCA
AATATAGCCCCCATATCATGCGCTACCAAAGACGCGTGACGCATGGATGC
GTGGAGTGAGAATAGCTNTGCTGTGATGTTGTCGTCGGCTTGTCCTTCGC
GCGCATCAGGAGCGTCTCCGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCATAGTATGCGCTACCAAAGACGCG
TGACGCATGGATGCGTGGAGTGAGAATAGCTCACGGCAACCTCACAGGTT
GAGTGATGTAGGAGATTGCCGGACAGTAGGAGATTGCCGGACACATGGAC
GTGTTGAGTGATTATAGCTGCATGCTTAAACCCCAAGGGTTGAATGAGGT
TTGAGATTGCCAGACACATGGACGGGTTGAGTGGGGATAGCTGCATACTG
AAACCCCACGGGTTGAGTGATGTTGGAGTGCCGGACACGTAGACGCTTTG
AGTGAGGAAAGACACATACTGAAACCTCACAGGTGATTGCATTGGAGATT
GCCGGACACAGAGACGTGTTGAGTGAGGATACTGAAACCTCATATATGGA
TTGGTTTTTGAGTTTGCCAGACACATAGACGCGCTGCGTGGGGATAGCTA
CATACTGAAACCTCACGAGTTGAGTGATGTTGGATAGTGCCAGACACATG
GACGCTTTGAATGAGGAAAGACACATACTGAGACCAAACGGGTTGAGTGA
CGTTTGCGACTTCCGGACACATAGACGCATTGAGTGACGAAAGCTGCATA
CTGAAACCTCAAAGGTTGATTTGTATTGGAGATTCCCGGACACATAGACG
CGTTGATTAAGGGTAGCTGTATACTGAAAATCCACAGTAGCTATAGTGAG
GGAACAATTCGAGACTGCAGTACACATAGACCCGACCCCCA

protein sequence of EsuBft1703_4a-0001

>EsuBft1703_4 ID=EsuBft1703_4|Name=EsuBft1703_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MASLSDRGFNALAFDPLQRLGVRELSVDVFLALVPDDSKEQSMLYRPQRL
IVAAEW

mRNA from alignment at Scaffold_129:1183292..1186998-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1703_4a-0001 ID=EsuBft1703_4a-0001|Name=EsuBft1703_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3707bp|location=Sequence derived from alignment at Scaffold_129:1183292..1186998- (Ectocarpus subulatus male Bft15b)
ATGGTACGTCATCACTAGTGGGGGGTTGGTGCAGTGGTGCAGCGTTGGGC
GGGGGGAATTGGCAAATAGAAATTCAATCCGGCATGCATCGCGCCACTCG
ATCCGTCCATTCTCGTTTGCTTTCTTCCCTCGCCGTCTCGTCCGTCTCCT
GCGCGCCTTCCGTCCCATTGGTTGTTGACTTGTGGTTTCGTTTGAGCGCC
CGTTGTCGGCTGGCCTCTTCTTCCTTCTCGTGCTAGGAGGTCATGAACCT
CTCAGCTCCCTGCAGCACCGCCGCATGCCAGGGTACTCCCCCCTCCACCT
TCGCCGCTTCCGTTCACTTTAACTTCGGTGCCGTGTCCTTCGGTACCGGG
ATTCCGAGACAACATGGATCGGTTTTCGTAGATCCGTGGTCGGCCCCGAA
TGCCTTCAGGTCGTCGAGAACATACTTCGGCCAGTTCTGTTCCGTTCCCC
CCCCTACGTCGCTTCTCCCCCCCCGCCAGTTCGCCGAGCATCATCAGTCG
TTTCGGGAGTCGCCCGTCCGGCTGCCTTGCCCATGCTCCCGCGAATAGCA
GGCGTCGTTGTCGGATCGTGGCTTCAACGCTCTGGCATTCGACCCTCTTC
AGCGTCTGGGCGTACGAGAGCTGTCGGTAGATGTCTTTCTTGCGCTTGTA
CCCGATGACTCGAAGGAGCAGTCGATGTTGTATCGACCGCAGCGTCTGAT
AGTGGCCGCTGAGTGGTGACCATGCCATGCAGCCATACAGCAGTGCCTCC
ATCTCCTCCGCCTGGAGCAGGCGGATCTTGAGTCGGAATGACGCTTTCGG
TCTGTCGAAGAGCTCCCGGCCATATCGCCTGAGGCACGCCCACGCTCCTC
TGCTCCTGTAGTTGATCTCCCGGGGGTGAGGTCGCCATGTTCGTTGACGA
GGCCACAGAGGCACCGGAACCCGGTCGTCTGGGCGTATTTCTGCCCCGCG
GCTTCGATGGTCAGCGGTGGAGGCGGGGGGTGCTGTGATGTTGTCGTCGG
CTTGTCCTTCGCGCGCATCAGGAGCGTCTCCGTCTTGTTCTCCGACACCG
TCAGCCCGAACTCCCCGAACACCTCAACGATGATGGTCATCATTCTCGCC
AGTCCTTCTGCAGACCTCGAAACGACGCCGGTATCATCGGCATACAGCAT
CCCCCATACTGCCCTCCCCCCCGGTGTTTAGGTCAATGGTGTAACGACTA
CGGCATGCACGATTATGAGTACACCCCCCTCTCCCCCCCCATTCTAGACT
CAAGGGGGTTGGCGCTGTTGGCAAAGCGATGTAAAACACGCCACCCCAAA
TATAGCCCCCATATCATGCGCTACCAAAGACGCGTGACGCATGGATGCGT
GGAGTGAGAATAGCTNTGCTGTGATGTTGTCGTCGGCTTGTCCTTCGCGC
GCATCAGGAGCGTCTCCGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCATAGTATGCGCTACCAAAGACGCGTG
ACGCATGGATGCGTGGAGTGAGAATAGCTCACGGCAACCTCACAGGTTGA
GTGATGTAGGAGATTGCCGGACAGTAGGAGATTGCCGGACACATGGACGT
GTTGAGTGATTATAGCTGCATGCTTAAACCCCAAGGGTTGAATGAGGTTT
GAGATTGCCAGACACATGGACGGGTTGAGTGGGGATAGCTGCATACTGAA
ACCCCACGGGTTGAGTGATGTTGGAGTGCCGGACACGTAGACGCTTTGAG
TGAGGAAAGACACATACTGAAACCTCACAGGTGATTTGTATTGGAGATTG
CCGGACACATAGACGTGTTGAGTGAGGATAGCTGCATACTGAAACCTCAC
AGATAGATTGGTTTTTGAGTTTGCCAGACACATAGACGCGTTGAGTGGGG
ATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGATAGTACCGG
ACACATTGACGCTTTGAGTCAGGAAAGACACATACTGAAACCTCACAGGT
TGATTTGTATCGGAGATTGCCGGACACAGAGACGTGTTGAGTGAGGATAG
CTGCATACTGAAACCTCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACACCTAGACGTGTTGAGT
GAGGATAGAAAGATACTGAAACCTCATATATGGATTGGTTTTTGAGTTTG
CCAGACACATAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGAGACGTGTTGAGTGAGGATACTGAAACCTCAT
ATATGGATTGGTTTTTGAGTTTGCCAGACACATAGACGCGCTGCGTGGGG
ATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGATAGTGCCGG
ACACATAGACGCTTTGAGTGAGGAAAGACACATACTGAAACCTCACAGGT
GATTGCATTGGAGATTGCCGGACACAGAGACGTGTTGAGTGAGGATACTG
AAACCTCATATATGGATTGGTTTTTGAGTTTGCCAGACACATAGACGCGC
TGCGTGGGGATAGCTACATACTGAAACCTCACGAGTTGAGTGATGTTGGA
TAGTGCCAGACACATGGACGCTTTGAATGAGGAAAGACACATACTGAGAC
CAAACGGGTTGAGTGACGTTTGCGACTTCCGGACACATAGACGCATTGAG
TGACGAAAGCTGCATACTGAAACCTCAAAGGTTGATTTGTATTGGAGATT
CCCGGACACATAGACGCGTTGATTAAGGGTAGCTGTATACTGAAAATCCA
CAGTAGCTATAGTGAGGGAACAATTCGAGACTGCAGTACACATAGACCCG
ACCCCCA

Coding sequence (CDS) from alignment at Scaffold_129:1183292..1186998-

>EsuBft1703_4a-0001 ID=EsuBft1703_4a-0001|Name=EsuBft1703_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_129:1183292..1186998- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGTTGTCGGATCGTGGCTTCAACGCTCTGGCATTCGACCCTCT
TCAGCGTCTGGGCGTACGAGAGCTGTCGGTAGATGTCTTTCTTGCGCTTG
TACCCGATGACTCGAAGGAGCAGTCGATGTTGTATCGACCGCAGCGTCTG
ATAGTGGCCGCTGAGTGGTGA