EsuBft1703_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1703_2a-0001
Unique Name	EsuBft1703_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:1208233..1210787 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1703_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	216
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_2a	EsuBft1703_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 1208233..1210787 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_2a-0001-exon	agat-exon-31199	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1208233..1208239 +
EsuBft1703_2a-0001-exon	EsuBft1703_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1208536..1208630 +
EsuBft1703_2a-0001-exon	agat-exon-31198	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 1208726..1210787 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_2a-0001-cds	EsuBft1703_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 1208233..1208239 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_2a-0001-exon	agat-three_prime_utr-5855	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 1209425..1210787 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1703_2a-0001	EsuBft1703_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 1208233..1209424 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:1208233..1210787+
coding sequence from alignment at Scaffold_129:1208233..1210787+

spliced messenger RNA

>EsuBft1703_2a-0001 ID=EsuBft1703_2a-0001|Name=EsuBft1703_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2164bp|location=Sequence derived from alignment at Scaffold_129:1208233..1210787+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGTGCACCCCTGTCCCAGTTTCGTGGAAGGACAACCTGGAGGTAA
CCTGCCGTCGGGCGAGCAAGAAGAAGATGCCCTCGACTACCCTCTGAACG
GTGACAACGGTGGTAACGATGGGGAATCGCCACCGGGGCAGCTCGAGGAC
GGCGGCGGGTCGGAGGAAAGCGAAGGTGGCGCACCGGGGGTGGGGGGGAT
CAAGGAGGAGCCAGCCGTCGGCAACCAGGGCGACGGGGATGGCGCCCCCT
CCGAAGATATCGAAGAAGTAGACGGCGGATATCCTGACAGATCCAACAAG
TGGATGCACCCCTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAG
CAGCGAGGACCCTGACCTTAGGACCGCGCGGAAAACGTCCGGGCCGAAGG
GTCGCGCAGGGAAGCAGAAGGCGCAGAAAGAGTCGCCCAGCACCAGCGAC
GGAAGCGGGTCGGAGACAAGCGGTGCGTACACCGAGGTAGGATTGTCGTC
GAGCGCTATTCGGACGTTCGCAGGGGCCGACGAAATTCAGAGCCGTGCGC
AGGTGAAGAACGAGCACACAGCTGTGGCGGCGGCGAACGCGCAAGAGCAG
GCGCGCCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGA
AGCTTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGACGCCG
CCCACAAGCTCGCTGGGATTACGCTCGCTTGGCCAAAAAAGCTAAAATCG
ACGACCTCAGGGGGAAGTTGGAGTTTACACTGGAAGGGCCAAGGGCGATA
GCACTTCGAGCCTCTATGTCGGCCTTGTATGACATGGATGACGCCGACTT
CATGCCCAAACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCC
CCAGTACATCCGCGACTGCGTCGGTGTCATCTGCCCTGCCTGCGTCTATT
TCGACATCGCCTGCTGCTTCAACACCCGCGTCTGCGGTCGGGCTAGTGAC
CCTCCCTACGTCCGTGTTTTCATCGCCTGCTACGTCAACGCCCACTTCCA
GTGTCCGAGACGTTGCCCCCATCGTTTTGGGCGCAACACGGTCCAGGACA
AGGGCTAATGCCCTCCCGGGATTTGCCGGGGCGCGGAAGAGGGGTGTTGG
TCATGAGAGAGAGGAAGAAAGGAGAATTTTAAGCACGAATCCCCTGAGAG
GAGACATTGCATATTTTTTTGGCATTGTGTTTTGCGAGCTGGTGTGCGTA
CGTTTTTTCAGTTTTCGCAATGTTTTGCTGTGTAGGGTGTAGAGGTCACC
CCCCCCTCTCCCCCCCGTCCCAGTCCCCGGCACCCACGTTTGTTTTTTGT
TGTGTACCATCCGACCTGTCTTACCTTTGGCCGTGTGTTCTACCTTTGAA
ACCTCTTTCATTAGTAGACTATGTAGCTTGCTTGTTTGTTCTTGTTCGCA
CGGGCTACGGCAGCAGCAGCAATGTTTTTCCTTGTCACCCCTCGTCCCCG
TTCCCTGTGACCACATTTGTTTGTTGTGTGCCCGTGGCCGCTCTTGTAGA
CTATGTAGCCTGCTTGTTTTGTTTTTTTCGCACGGGCTACGGCAGAAGAA
GGAATGTTTTTCCTTGCCACCCCTCGTCCCCGTTCCCTGTACCGTGTGCC
CACATTTTTTTGTTGTGTACCATCCGACCTGTCTTATCCTTGGCCTGTTT
TTTCTTGTGGCCTGTTCTTTTTTTTTTGCGTACGGGCTGCAGCAGCAAAT
GTCTCCGCTTCCGGTTCAATGTTGCTGTTTTGTTTTGTCCCACCGTCAAG
CTGGGGGCAAACGATTGTACAATACATGTCAGGATAGAATCTCTCATGTC
GCTTTCGACAAACCAACCTGCCAAGTCAACGACGTGGACCCACGGTAGAC
TTACTTGGGCATGTGCAGCGTGATACCGTTGGTCAACAAAAGACATTTAG
GAGTTGTCGAAACCCAGACCGTCGTTGGGAGTGCAATAGAGAAAGAGATA
ATGAATCATTCTTCACGCGAAGGTTGCAGACTGTTCCAATTGAGAACAAG
ATCCAGTCCAATTTGGTCGACGACCTACATCTCATGCCTCCAGGGACATG
CGAAGAGAACCCGATGTGTACTTCGAAGTATGTCTACAAAAAAAGACGTC
CGCACAGGGGGGGG

protein sequence of EsuBft1703_2a-0001

>EsuBft1703_2 ID=EsuBft1703_2|Name=EsuBft1703_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MRVHPCPSFVEGQPGGNLPSGEQEEDALDYPLNGDNGGNDGESPPGQLED
GGGSEESEGGAPGVGGIKEEPAVGNQGDGDGAPSEDIEEVDGGYPDRSNK
WMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRAGKQKAQKESPSTSD
GSGSETSGAYTEVGLSSSAIRTFAGADEIQSRAQVKNEHTAVAAANAQEQ
ARRVQQAHTGKLVTAVEALSAAVVSRQALDEDAAHKLAGITLAWPKKLKS
TTSGGSWSLHWKGQGR

mRNA from alignment at Scaffold_129:1208233..1210787+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1703_2a-0001 ID=EsuBft1703_2a-0001|Name=EsuBft1703_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2555bp|location=Sequence derived from alignment at Scaffold_129:1208233..1210787+ (Ectocarpus subulatus male Bft15b)
ATGCGAGGTCAATGGTCTAACTTCTACGGCATGCACGACTATGAGTACAC
CCCCACCCCCCACCCCAGCGCTCAAAACGCACTAGACTGCGAGCAATAGG
TAGTTCAACCCCAACCCACAACCCCGTAATATTCCAGCAAAACCGCAACA
TCCTTGGTCATAGCCCCTCTTCATGGCATAGCCCGCCCCCAATAATTACT
CCACCGACGTACCAACCAAATTGGCGTAATCCCGGCGTACCAATTTCCCT
GTCCTCTGTAACCTCACCGTTCGTGCATTCCCCCCCCCGTCTCCCTGCTC
CAGTGCACCCCTGTCCCAGTTTCGTGGAAGGACAACCTGGAGGTAACCTG
CCGTCGGGCGAGCAAGAAGAAGATGCCCTCGACTACCCTCTGAACGGTGT
ATACCACCTCAGCTCCGGGAACGCCGAGGACCCCATCGAGTTGGAAGACG
GCGACAACGATGTTGCGAACGGCGGGGGAGCGGCGGGCTGCAGGACAACG
GTGGTAACGATGGGGAATCGCCACCGGGGCAGCTCGAGGACGGCGGCGGG
TCGGAGGAAAGCGAAGGTGGCGCACCGGGGGTGGGGGGGATCAAGGAGGA
GCCAGCCGTCGGCAACCAGGGCGACGGGGATGGCGCCCCCTCCGAAGATA
TCGAAGAAGTAGACGGCGGATATCCTGACAGATCCAACAAGTGGATGCAC
CCCTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAGCAGCGAGGA
CCCTGACCTTAGGACCGCGCGGAAAACGTCCGGGCCGAAGGGTCGCGCAG
GGAAGCAGAAGGCGCAGAAAGAGTCGCCCAGCACCAGCGACGGAAGCGGG
TCGGAGACAAGCGGTGCGTACACCGAGGTAGGATTGTCGTCGAGCGCTAT
TCGGACGTTCGCAGGGGCCGACGAAATTCAGAGCCGTGCGCAGGTGAAGA
ACGAGCACACAGCTGTGGCGGCGGCGAACGCGCAAGAGCAGGCGCGCCGC
GTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGAAGCTTTGTC
GGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGACGCCGCCCACAAGC
TCGCTGGGATTACGCTCGCTTGGCCAAAAAAGCTAAAATCGACGACCTCA
GGGGGAAGTTGGAGTTTACACTGGAAGGGCCAAGGGCGATAGCACTTCGA
GCCTCTATGTCGGCCTTGTATGACATGGATGACGCCGACTTCATGCCCAA
ACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCCCCAGTACAT
CCGCGACTGCGTCGGTGTCATCTGCCCTGCCTGCGTCTATTTCGACATCG
CCTGCTGCTTCAACACCCGCGTCTGCGGTCGGGCTAGTGACCCTCCCTAC
GTCCGTGTTTTCATCGCCTGCTACGTCAACGCCCACTTCCAGTGTCCGAG
ACGTTGCCCCCATCGTTTTGGGCGCAACACGGTCCAGGACAAGGGCTAAT
GCCCTCCCGGGATTTGCCGGGGCGCGGAAGAGGGGTGTTGGTCATGAGAG
AGAGGAAGAAAGGAGAATTTTAAGCACGAATCCCCTGAGAGGAGACATTG
CATATTTTTTTGGCATTGTGTTTTGCGAGCTGGTGTGCGTACGTTTTTTC
AGTTTTCGCAATGTTTTGCTGTGTAGGGTGTAGAGGTCACCCCCCCCTCT
CCCCCCCGTCCCAGTCCCCGGCACCCACGTTTGTTTTTTGTTGTGTACCA
TCCGACCTGTCTTACCTTTGGCCGTGTGTTCTACCTTTGAAACCTCTTTC
ATTAGTAGACTATGTAGCTTGCTTGTTTGTTCTTGTTCGCACGGGCTACG
GCAGCAGCAGCAATGTTTTTCCTTGTCACCCCTCGTCCCCGTTCCCTGTG
ACCACATTTGTTTGTTGTGTGCCCGTGGCCGCTCTTGTAGACTATGTAGC
CTGCTTGTTTTGTTTTTTTCGCACGGGCTACGGCAGAAGAAGGAATGTTT
TTCCTTGCCACCCCTCGTCCCCGTTCCCTGTACCGTGTGCCCACATTTTT
TTGTTGTGTACCATCCGACCTGTCTTATCCTTGGCCTGTTTTTTCTTGTG
GCCTGTTCTTTTTTTTTTGCGTACGGGCTGCAGCAGCAAATGTCTCCGCT
TCCGGTTCAATGTTGCTGTTTTGTTTTGTCCCACCGTCAAGCTGGGGGCA
AACGATTGTACAATACATGTCAGGATAGAATCTCTCATGTCGCTTTCGAC
AAACCAACCTGCCAAGTCAACGACGTGGACCCACGGTAGACTTACTTGGG
CATGTGCAGCGTGATACCGTTGGTCAACAAAAGACATTTAGGAGTTGTCG
AAACCCAGACCGTCGTTGGGAGTGCAATAGAGAAAGAGATAATGAATCAT
TCTTCACGCGAAGGTTGCAGACTGTTCCAATTGAGAACAAGATCCAGTCC
AATTTGGTCGACGACCTACATCTCATGCCTCCAGGGACATGCGAAGAGAA
CCCGATGTGTACTTCGAAGTATGTCTACAAAAAAAGACGTCCGCACAGGG
GGGGG

Coding sequence (CDS) from alignment at Scaffold_129:1208233..1210787+

>EsuBft1703_2a-0001 ID=EsuBft1703_2a-0001|Name=EsuBft1703_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=801bp|location=Sequence derived from alignment at Scaffold_129:1208233..1210787+ (Ectocarpus subulatus male Bft15b)
ATGCGAGTGCACCCCTGTCCCAGTTTCGTGGAAGGACAACCTGGAGGTAA
CCTGCCGTCGGGCGAGCAAGAAGAAGATGCCCTCGACTACCCTCTGAACG
GTGACAACGGTGGTAACGATGGGGAATCGCCACCGGGGCAGCTCGAGGAC
GGCGGCGGGTCGGAGGAAAGCGAAGGTGGCGCACCGGGGGTGGGGGGGAT
CAAGGAGGAGCCAGCCGTCGGCAACCAGGGCGACGGGGATGGCGCCCCCT
CCGAAGATATCGAAGAAGTAGACGGCGGATATCCTGACAGATCCAACAAG
TGGATGCACCCCTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAG
CAGCGAGGACCCTGACCTTAGGACCGCGCGGAAAACGTCCGGGCCGAAGG
GTCGCGCAGGGAAGCAGAAGGCGCAGAAAGAGTCGCCCAGCACCAGCGAC
GGAAGCGGGTCGGAGACAAGCGGTGCGTACACCGAGGTAGGATTGTCGTC
GAGCGCTATTCGGACGTTCGCAGGGGCCGACGAAATTCAGAGCCGTGCGC
AGGTGAAGAACGAGCACACAGCTGTGGCGGCGGCGAACGCGCAAGAGCAG
GCGCGCCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGA
AGCTTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGACGCCG
CCCACAAGCTCGCTGGGATTACGCTCGCTTGGCCAAAAAAGCTAAAATCG
ACGACCTCAGGGGGAAGTTGGAGTTTACACTGGAAGGGCCAAGGGCGATA
G