EsuBft1696_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1696_4a-0001
Unique NameEsuBft1696_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:218724..220647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6669.EFX68856
ProteomeIdEsuBft1696_4
Protein domainsCoil
Protein domainsIPR006600
Protein domainsPTHR19303
Protein domainsIPR009057
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Notejerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1620
Hectar predicted targeting categoryother localisation
Evalue1.35e-32
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
Date last modified2016-06-13
Date creation2016-06-13
DescriptionJerky protein homolog-like
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1696_4aEsuBft1696_4aEctocarpus subulatus male Bft15bgeneScaffold_463 218724..220647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1696_4a-0001EsuBft1696_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 220069..220638 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1696_4a-0001-exonEsuBft1696_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 218724..219039 -
EsuBft1696_4a-0001-exonagat-exon-98872Ectocarpus subulatus male Bft15bexonScaffold_463 219197..219722 -
EsuBft1696_4a-0001-exonagat-exon-98871Ectocarpus subulatus male Bft15bexonScaffold_463 219870..220647 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1696_4a-0001-exonagat-three_prime_utr-5794Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 218724..219039 -
EsuBft1696_4a-0001-exonagat-three_prime_utr-5795Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 219197..219722 -
EsuBft1696_4a-0001-exonagat-three_prime_utr-5796Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 219870..220068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1696_4a-0001-cdsEsuBft1696_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 220069..220638 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1696_4a-0001-exonagat-five_prime_utr-3763Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 220639..220647 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1696_4a-0001 ID=EsuBft1696_4a-0001|Name=EsuBft1696_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1620bp|location=Sequence derived from alignment at Scaffold_463:218724..220647- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGTGGTTCGATGATCCAGGCCCAGGCCTTGAAGATCGCGGCGCAGATGGG
GAAGACCAACTTCAAGGCGACCAACGGCTGGCTACATCGCTTCCTGAAAC
GCTACAGCTTCACTCACGTCCAATTGCACGGAGAAGCTGGCGACGTGGAC
AAGCAGAAGGTCGCAGAGGAGATCGACAGGATTCGTGAGCAGCTGCAGGT
GTTCGACGTCGAGTTCATTTTTGTCATGGACGAGACGGGACTTTTCTTCC
GCTACTTCCCGAGAGGTACATACGTCACGAGGGGGGAGGCCGCCGCCGCC
GTCAACTGCAAAACGGCGCGGGGATCGAAGGCCATGAAGGCAAAGGATCA
GTGCACGGTGGCCGCCTGCTGCAATACGACCGGGTCTCTGATGGTGCCGT
TGGCCGTCATCAGCACGTCGAAAAAACCGATGGTTTTCCGCCACGTCCAC
AAACCGCCATGTCCCTACTTCGCCCAGGAGATTGCCTGGATCGACGCAGC
CTTTTGCCAGCGGTGGTTTGACGAAGTCTTTGTCCCCTTCGCCAAAGGCA
AGACCTCCAAGAAGGTGGCCCTCTTGTAGGACAACTGCCCCGGCCACAAG
ATCAAAAGCAACGACCCGCAGATCGTCATCTTCGTGCCTCCGAACGTCAC
TTACGTCTACCAGCCCATGGACATGGGCATCCTGTTTGTACTCAAGTGCC
AGTACAAGACCGAGATGGTGGCAAGGCTGGCAGACCTCATCGAGGACTGG
GACACGTCCGTGCACGAAAAATCCAAAGAGGGTGCCGGGGCCTCAGCGAT
GCAGGACAGGCGACAATGCTGGACATCATGGAGATCTGTTCCCAGAAGTG
GCGTAGCTTCGACGTTCAGACGGTCATCAGGTGCTGGCCTAAGGCTAGCA
TCCTTCCCAGGGAGCACTGCAACGTTCTCAAGGGCATGGACACGCGGCTT
GACCGAGAGGACAAGGACGACGCGGCAATCATCGACGGTCTTCGTGGCAT
GGTCTCAAAAATGTCGATGCCAGCTAGCGGAACGGACAATAGGGCCATGC
CGCGAGTGTTGACGGACAACTTGTTTGTCGAGAAGGGCACAGATCTCACA
GAGCAGGAAGTCCGAACGGCGGTCAAGATGTGGCTTACGGTAGAGGACGA
CCCCGAGGTGTTGGAAGAGGAAGTGGAGTTGGAACTGCAGGCAGTAGAGT
GGGATCTCGCCGGCTTAGAAATGGACGACGACGTATCGAGCGAAGAGGGC
GACGGCAACGGCAGGCCGGAGTCGTGCATAACCTCGTCCCTCACCTAAGG
CGAGGTTATCTCTCGCTTGGAGGACGTTCGATCCTATTTGTACGCGAAGG
GAAGGGGTGGCGAGTACCGTGAGACGCAGTACCTTGTTTCGAAGGCCGTT
CATTCGTTTACTCATGAAACTCAACAGAGGCGTAGAGCCAAGCCGCGGGG
GGAGGTTCAGGGAACTCTTCGCGATATGTGGAGGGAAAAGCTGTCAGGGT
AGCTTGGTCTCCGCCGGGACAGTTATATGTATGTTCCTCGGTGCGACGCT
GAAATTCGCTTGATTTTTTTGTGGTTCACGAGAATGAGATAAATATATTT
CTACTTGGATTTTCCTCCTT
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protein sequence of EsuBft1696_4a-0001

>EsuBft1696_4 ID=EsuBft1696_4|Name=EsuBft1696_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MIQAQALKIAAQMGKTNFKATNGWLHRFLKRYSFTHVQLHGEAGDVDKQK
VAEEIDRIREQLQVFDVEFIFVMDETGLFFRYFPRGTYVTRGEAAAAVNC
KTARGSKAMKAKDQCTVAACCNTTGSLMVPLAVISTSKKPMVFRHVHKPP
CPYFAQEIAWIDAAFCQRWFDEVFVPFAKGKTSKKVALL
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mRNA from alignment at Scaffold_463:218724..220647-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1696_4a-0001 ID=EsuBft1696_4a-0001|Name=EsuBft1696_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1924bp|location=Sequence derived from alignment at Scaffold_463:218724..220647- (Ectocarpus subulatus male Bft15b)
AGTGGTTCGATGATCCAGGCCCAGGCCTTGAAGATCGCGGCGCAGATGGG
GAAGACCAACTTCAAGGCGACCAACGGCTGGCTACATCGCTTCCTGAAAC
GCTACAGCTTCACTCACGTCCAATTGCACGGAGAAGCTGGCGACGTGGAC
AAGCAGAAGGTCGCAGAGGAGATCGACAGGATTCGTGAGCAGCTGCAGGT
GTTCGACGTCGAGTTCATTTTTGTCATGGACGAGACGGGACTTTTCTTCC
GCTACTTCCCGAGAGGTACATACGTCACGAGGGGGGAGGCCGCCGCCGCC
GTCAACTGCAAAACGGCGCGGGGATCGAAGGCCATGAAGGCAAAGGATCA
GTGCACGGTGGCCGCCTGCTGCAATACGACCGGGTCTCTGATGGTGCCGT
TGGCCGTCATCAGCACGTCGAAAAAACCGATGGTTTTCCGCCACGTCCAC
AAACCGCCATGTCCCTACTTCGCCCAGGAGATTGCCTGGATCGACGCAGC
CTTTTGCCAGCGGTGGTTTGACGAAGTCTTTGTCCCCTTCGCCAAAGGCA
AGACCTCCAAGAAGGTGGCCCTCTTGTAGGACAACTGCCCCGGCCACAAG
ATCAAAAGCAACGACCCGCAGATCGTCATCTTCGTGCCTCCGAACGTCAC
TTACGTCTACCAGCCCATGGACATGGGCATCCTGTTTGTACTCAAGTGCC
AGTACAAGACCGAGATGGTGGCAAGGCTGGCAGACCTCATCGAGGACTGG
GACACGTCCGTGCACGAAAAATCCAAAGGTGAATTCAAAACAACAATGTC
GGGGAGCTCTTTGTTACAGTCGTCGCAGGTCTTGCGAAGGCTCTGAAAAT
GGTGCTCTTTCAACTGTTTGTCGAGCTGGTTTTAACATTAGCCCTTTCAT
CCGTCCCTGTCTTTCGTTTCGGCAGAGGGTGCCGGGGCCTCAGCGATGCA
GGACAGGCGACAATGCTGGACATCATGGAGATCTGTTCCCAGAAGTGGCG
TAGCTTCGACGTTCAGACGGTCATCAGGTGCTGGCCTAAGGCTAGCATCC
TTCCCAGGGAGCACTGCAACGTTCTCAAGGGCATGGACACGCGGCTTGAC
CGAGAGGACAAGGACGACGCGGCAATCATCGACGGTCTTCGTGGCATGGT
CTCAAAAATGTCGATGCCAGCTAGCGGAACGGACAATAGGGCCATGCCGC
GAGTGTTGACGGACAACTTGTTTGTCGAGAAGGGCACAGATCTCACAGAG
CAGGAAGTCCGAACGGCGGTCAAGATGTGGCTTACGGTAGAGGACGACCC
CGAGGTGTTGGAAGAGGAAGTGGAGTTGGAACTGCAGGCAGTAGAGTGGG
ATCTCGCCGGCTTAGAAATGGACGACGACGTATCGAGCGAAGAGGGCGAC
GGCAACGGCAGGCCGGAGTCGTGCATAACCTCGTCCCTCACCTAAGGCGA
GGTTATCTCTCGCTTGGAGGACGTTCGATCCTATTTGTACGCGAAGGGAA
GGGGTGGCGAGTACCGTGAGACGCAGTACCTTGTTTCGAAGGCCGTTCAT
TCGTTTACTCATGAAACTCAACAGAGGCGTAGAGCCAAGCCGCGGGGGNT
AAGGCGAGGTTATCTCTCGCTTGGAGGACGTTCGATCCTATTTGTACGCG
AAGGGAAGGGGTGGCGAGTACCGTGAGACGCAGTACCTTGTTTCGAAGGC
CGTTCATTCGTTTACTCATGAAACTCAACAGAGGCGTAGAGCCAAGCCGC
GGGGGGAGGTTCAGGGAACTCTTCGCGATATGTGGAGGGAAAAGCTGTCA
GGGTAGCTTGGTCTCCGCCGGGACAGTTATATGTATGTTCCTCGGTGCGA
CGCTGAAATTCGCTTGATTTTTTTGTGGTTCACGAGAATGAGATAAATAT
ATTTCTACTTGGATTTTCCTCCTT
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Coding sequence (CDS) from alignment at Scaffold_463:218724..220647-

>EsuBft1696_4a-0001 ID=EsuBft1696_4a-0001|Name=EsuBft1696_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_463:218724..220647- (Ectocarpus subulatus male Bft15b)
ATGATCCAGGCCCAGGCCTTGAAGATCGCGGCGCAGATGGGGAAGACCAA
CTTCAAGGCGACCAACGGCTGGCTACATCGCTTCCTGAAACGCTACAGCT
TCACTCACGTCCAATTGCACGGAGAAGCTGGCGACGTGGACAAGCAGAAG
GTCGCAGAGGAGATCGACAGGATTCGTGAGCAGCTGCAGGTGTTCGACGT
CGAGTTCATTTTTGTCATGGACGAGACGGGACTTTTCTTCCGCTACTTCC
CGAGAGGTACATACGTCACGAGGGGGGAGGCCGCCGCCGCCGTCAACTGC
AAAACGGCGCGGGGATCGAAGGCCATGAAGGCAAAGGATCAGTGCACGGT
GGCCGCCTGCTGCAATACGACCGGGTCTCTGATGGTGCCGTTGGCCGTCA
TCAGCACGTCGAAAAAACCGATGGTTTTCCGCCACGTCCACAAACCGCCA
TGTCCCTACTTCGCCCAGGAGATTGCCTGGATCGACGCAGCCTTTTGCCA
GCGGTGGTTTGACGAAGTCTTTGTCCCCTTCGCCAAAGGCAAGACCTCCA
AGAAGGTGGCCCTCTTGTAG
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