EsuBft1686_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1686_8a-0001
Unique Name	EsuBft1686_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_444	contig	Scaffold_444:330365..333030 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1686_8
Protein domains	IPR027806
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	133
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1686_8a	EsuBft1686_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_444 330365..333030 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1686_8a-0001-exon	EsuBft1686_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 330365..331101 +
EsuBft1686_8a-0001-exon	agat-exon-28640	Ectocarpus subulatus male Bft15b	exon	Scaffold_444 332435..333030 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1686_8a-0001-exon	agat-five_prime_utr-3726	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_444 330365..330390 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1686_8a-0001-cds	EsuBft1686_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_444 330391..331101 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1686_8a-0001-exon	agat-three_prime_utr-5733	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_444 333011..333030 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1686_8a-0001	EsuBft1686_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_444 330391..333010 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_444:330365..333030+
coding sequence from alignment at Scaffold_444:330365..333030+

spliced messenger RNA

>EsuBft1686_8a-0001 ID=EsuBft1686_8a-0001|Name=EsuBft1686_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1333bp|location=Sequence derived from alignment at Scaffold_444:330365..333030+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGACGGTAGCATCCTCTGGTTGGAGAATGGCCACTTCGCGGAGTCGTCTT
GTGGCTGTCTTGCAGCATCGACGCCGCGTGACGGAGGAGTCGCTTGGCGC
CGATGTCGAAGCAGACGAGGCCAACGAAGAGGAGCGCGTGGCTCTCGGTA
AGCGACAACTCGAGGCCGTTGTGGCGGCGACAGCCCGGGCTCCTCAAGTG
TTTGATGCCCGCGATGCTGAAGAGGTTGAAGAGGACATGCGCAGAGCCAC
CATGTACAAGCAGCAGCTGAAAAAGATCAAGCCTCTCATCCCAGGCGTAG
GGCGGGGTAAGAGCGAAGCCAACCTCCTTGCTTCGCGTAAACGGACTGCC
CTCGTGTTCCCCGCGGAACAAGGCGGGATATACGGGGCGCACACCAGCAG
CCAGATCAGGTACAAGACGGGGTTCACGAAGGAGGAGTTCGACGATTTTT
TCGCCGCTACGCACATCGACAGAGAGGGGAATTTGCTGCCCCGATCTTGG
TTTTTCCAGCAAGCTCGAAACAACCTCGGCAAGCACACCCCTGAGGAGAA
CCAGGCTCGGCGCACGATAAGAGGTAGCATGAGCGATCAAGACAGAGTGC
TCTGCTATGTTGAGATGCTGAGGAGGGACACCAGCTTTGAGGATATGTCG
CTGAAGTACGGACGCTCCAAGGGCACCTGGTCGAACGAGTTCCATGACAT
GACCATGGCCGCGCAGGACATGCCTTGTTTGCAACAGGTAGAGACTGTGC
GCGGGTCCCTGTCAGACCGGGGGGCGCTTCTCTCCTCTGACGTGTTCCAA
CACCCGGACCAGTTCCTCTCCGCTGACGAGGTCGGGATGGGAGACGGCAA
CTACAGAGGATTAGCCCGTGCGGACAGCAATGACATGTACATGTGCGCGC
CCCACCCCGGACCAAATGTACCTCCCGAGGGCAGGAGGTACAACAGAGAA
CAGCGCCGATTCCGAGTCGTGGTCGAGAACACCATCGGCCAGATCAAGAA
GTTCAAGACCGTGGGGAACGGCAAGGCCTTCAGGCACCAGCGCGACTTCG
AGAAGCACGTTTTCAACGTGTGCGCCAGGCTCACAGCTCGCATCATGAGG
GTGCGAAACAAGTACCCAAGAAGCGAGGCGTGGATCGGGGACAAGAAAGA
GGAGTGGGAGGCGAAGCTCGGTATCCACTACTACTGGGACTACGATGAGC
CGGGATGCTACTTGATCCACAACGAGGGCGAAAACTTGGTATACGACAAC
ACCATCGAGGGAACTGCCGAGGGCCTGCAGGAGGCTTGGGACGCTATTTG
GTTGATGGACTGAGCTTTTGTTGACCTTCAGCA

protein sequence of EsuBft1686_8a-0001

>EsuBft1686_8 ID=EsuBft1686_8|Name=EsuBft1686_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=428bp
MATSRSRLVAVLQHRRRVTEESLGADVEADEANEEERVALGKRQLEAVVA
ATARAPQVFDARDAEEVEEDMRRATMYKQQLKKIKPLIPGVGRGKSEANL
LASRKRTALVFPAEQGGIYGAHTSSQIRYKTGFTKEEFDDFFAATHIDRE
GNLLPRSWFFQQARNNLGKHTPEENQARRTIRGSMSDQDRVLCYVEMLRR
DTSFEDMSLKYGRSKGTWSNEFHDMTMAAQDMPCLQQVETVRGSLSDRGA
LLSSDVFQHPDQFLSADEVGMGDGNYRGLARADSNDMYMCAPHPGPNVPP
EGRRYNREQRRFRVVVENTIGQIKKFKTVGNGKAFRHQRDFEKHVFNVCA
RLTARIMRVRNKYPRSEAWIGDKKEEWEAKLGIHYYWDYDEPGCYLIHNE
GENLVYDNTIEGTAEGLQEAWDAIWLMD

mRNA from alignment at Scaffold_444:330365..333030+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1686_8a-0001 ID=EsuBft1686_8a-0001|Name=EsuBft1686_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2666bp|location=Sequence derived from alignment at Scaffold_444:330365..333030+ (Ectocarpus subulatus male Bft15b)
CGACGGTAGCATCCTCTGGTTGGAGAATGGCCACTTCGCGGAGTCGTCTT
GTGGCTGTCTTGCAGCATCGACGCCGCGTGACGGAGGAGTCGCTTGGCGC
CGATGTCGAAGCAGACGAGGCCAACGAAGAGGAGCGCGTGGCTCTCGGTA
AGCGACAACTCGAGGCCGTTGTGGCGGCGACAGCCCGGGCTCCTCAAGTG
TTTGATGCCCGCGATGCTGAAGAGGTTGAAGAGGACATGCGCAGAGCCAC
CATGTACAAGCAGCAGCTGAAAAAGATCAAGCCTCTCATCCCAGGCGTAG
GGCGGGGTAAGAGCGAAGCCAACCTCCTTGCTTCGCGTAAACGGACTGCC
CTCGTGTTCCCCGCGGAACAAGGCGGGATATACGGGGCGCACACCAGCAG
CCAGATCAGGTACAAGACGGGGTTCACGAAGGAGGAGTTCGACGATTTTT
TCGCCGCTACGCACATCGACAGAGAGGGGAATTTGCTGCCCCGATCTTGG
TTTTTCCAGCAAGCTCGAAACAACCTCGGCAAGCACACCCCTGAGGAGAA
CCAGGCTCGGCGCACGATAAGAGGTAGCATGAGCGATCAAGACAGAGTGC
TCTGCTATGTTGAGATGCTGAGGAGGGACACCAGCTTTGAGGATATGTCG
CTGAAGTACGGACGCTCCAAGGGCACCTGGTCGAACGAGTTCCATGACAT
GACCATGGCCGCGCAGGACATGCCTTGTTTGCAACAGGTGATGAACATGA
GGTCATACTACGTGTTAAGGTATTTAGAGTCGGGGGATACGTTCCCGTTT
AGATTATAGCATAATAGTTGGAGTCACTCGCTTGGAGCCACTCGCCAAGA
TACAGGCGCGGATTGACGCATGCAGCTTGAGAGGTGAGGTCAGCTGGGAT
CCAATATCCAATGTACAGGCTCGGGTCATAGCATGTACGAAGTAGTTTTG
AGAGGTTAGGTCGTGGCCTGATTTTAGTGTCGCAGCAGCAGGAAAAAGCC
AAGAATGTTTGCTCTGCTAGGTAAAGCCCCGCATTCACTTGCCTTGGTGC
CTTGGGAGCCTTCCCTGCTGCTTGAGAGACTCGAATAAACGTGAGTGAAC
CCTAGGTCCAACAACCTGCCTTGCGGTTGTGGTCGGGTGCGCCCCACACT
GCCTATCTGACATCAAAAGCTCCCTTTTGTCAAAAAACTTCGTGCTCTCT
AACGATTGTCCAGGAAATCCAATGGCCGGACGCAGTGGAGCGGAAACATC
ATGCTGATTTCCTTCAGCGATATGGCCACCCGGAGTTTCCTCGCATCGGC
TATATCGCCGACGGGACGATGGTCGGCATGCGTGATCCGGCGAGGGTGAG
ACGTTGTAAATAGATCGTAACCTGAGGTCAATCTTAGGTTCCCCTTAGGT
TGGCGTTTCCATGTCCACCTGTATATTGGACATGTTGCTGCGGGACCAAC
GCTCGAAGAATCCAGGAAGTACGCGGTAGAATGGTATTGATTTAGGGACA
AGCTGCTGTCGATATGTGTACCAGTGCGAGATGGGCAAGGAAATCCTGAG
TTGTGCTGTGCATGTCCACTTAGAGACTTGGTTGTTTCGCACGTCCCACC
AGGTCGGCAAGGGGAAAGAGGAGCCTCGAGAAGCAGTGCACGCTGAAAAC
TATTCAGGCAACAAGGGCCTTGGCACAAGCCACATCGTGTTTGTCAACAT
CCGCGGCAAGATTATCAGGGTGTGTAAGGTTTCAGCCGTTGTTTGTCAAA
AAGACGAGTATGTTCCGTGAACTCCTAAAATCGTGTGTGTCATGCAGGTG
GATCGCCGCCCGGTGCTTTAGGCTCGAGCAGATGTACAGAATGCACGCAT
TAATTAGCATCGTGGTCTTTTCTACAATCTGCGGCACGCGTGATCACGGT
TTACCTAAAATTAGGCCACCGCGATTGACACCTGGTGCGTACTTTCGTCT
CGCCGAACAAACCCGATCAGGTAGAGACTGTGCGCGGGTCCCTGTCAGAC
CGGGGGGCGCTTCTCTCCTCTGACGTGTTCTCTGGTGCGTACTTTCGTCT
CGCCGAACAAACCCGATCAGGTAGAGACTGTGCGCGGGTCCCTGTCAGAC
CGGGGGGCGCTTCTCTCCTCTGACGTGTTCCAACACCCGGACCAGTTCCT
CTCCGCTGACGAGGTCGGGATGGGAGACGGCAACTACAGAGGATTAGCCC
GTGCGGACAGCAATGACATGTACATGTGCGCGCCCCACCCCGGACCAAAT
GTACCTCCCGAGGGCAGGAGGTACAACAGAGAACAGCGCCGATTCCGAGT
CGTGGTCGAGAACACCATCGGCCAGATCAAGAAGTTCAAGACCGTGGGGA
ACGGCAAGGCCTTCAGGCACCAGCGCGACTTCGAGAAGCACGTTTTCAAC
GTGTGCGCCAGGCTCACAGCTCGCATCATGAGGGTGCGAAACAAGTACCC
AAGAAGCGAGGCGTGGATCGGGGACAAGAAAGAGGAGTGGGAGGCGAAGC
TCGGTATCCACTACTACTGGGACTACGATGAGCCGGGATGCTACTTGATC
CACAACGAGGGCGAAAACTTGGTATACGACAACACCATCGAGGGAACTGC
CGAGGGCCTGCAGGAGGCTTGGGACGCTATTTGGTTGATGGACTGAGCTT
TTGTTGACCTTCAGCA

Coding sequence (CDS) from alignment at Scaffold_444:330365..333030+

>EsuBft1686_8a-0001 ID=EsuBft1686_8a-0001|Name=EsuBft1686_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1287bp|location=Sequence derived from alignment at Scaffold_444:330365..333030+ (Ectocarpus subulatus male Bft15b)
ATGGCCACTTCGCGGAGTCGTCTTGTGGCTGTCTTGCAGCATCGACGCCG
CGTGACGGAGGAGTCGCTTGGCGCCGATGTCGAAGCAGACGAGGCCAACG
AAGAGGAGCGCGTGGCTCTCGGTAAGCGACAACTCGAGGCCGTTGTGGCG
GCGACAGCCCGGGCTCCTCAAGTGTTTGATGCCCGCGATGCTGAAGAGGT
TGAAGAGGACATGCGCAGAGCCACCATGTACAAGCAGCAGCTGAAAAAGA
TCAAGCCTCTCATCCCAGGCGTAGGGCGGGGTAAGAGCGAAGCCAACCTC
CTTGCTTCGCGTAAACGGACTGCCCTCGTGTTCCCCGCGGAACAAGGCGG
GATATACGGGGCGCACACCAGCAGCCAGATCAGGTACAAGACGGGGTTCA
CGAAGGAGGAGTTCGACGATTTTTTCGCCGCTACGCACATCGACAGAGAG
GGGAATTTGCTGCCCCGATCTTGGTTTTTCCAGCAAGCTCGAAACAACCT
CGGCAAGCACACCCCTGAGGAGAACCAGGCTCGGCGCACGATAAGAGGTA
GCATGAGCGATCAAGACAGAGTGCTCTGCTATGTTGAGATGCTGAGGAGG
GACACCAGCTTTGAGGATATGTCGCTGAAGTACGGACGCTCCAAGGGCAC
CTGGTCGAACGAGTTCCATGACATGACCATGGCCGCGCAGGACATGCCTT
GTTTGCAACAGGTAGAGACTGTGCGCGGGTCCCTGTCAGACCGGGGGGCG
CTTCTCTCCTCTGACGTGTTCCAACACCCGGACCAGTTCCTCTCCGCTGA
CGAGGTCGGGATGGGAGACGGCAACTACAGAGGATTAGCCCGTGCGGACA
GCAATGACATGTACATGTGCGCGCCCCACCCCGGACCAAATGTACCTCCC
GAGGGCAGGAGGTACAACAGAGAACAGCGCCGATTCCGAGTCGTGGTCGA
GAACACCATCGGCCAGATCAAGAAGTTCAAGACCGTGGGGAACGGCAAGG
CCTTCAGGCACCAGCGCGACTTCGAGAAGCACGTTTTCAACGTGTGCGCC
AGGCTCACAGCTCGCATCATGAGGGTGCGAAACAAGTACCCAAGAAGCGA
GGCGTGGATCGGGGACAAGAAAGAGGAGTGGGAGGCGAAGCTCGGTATCC
ACTACTACTGGGACTACGATGAGCCGGGATGCTACTTGATCCACAACGAG
GGCGAAAACTTGGTATACGACAACACCATCGAGGGAACTGCCGAGGGCCT
GCAGGAGGCTTGGGACGCTATTTGGTTGATGGACTGA