EsuBft1686_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1686_6a-0001
Unique NameEsuBft1686_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:337866..339486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1686_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length104
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_6aEsuBft1686_6aEctocarpus subulatus male Bft15bgeneScaffold_444 337866..339486 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_6a-0001-exonEsuBft1686_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 337866..338428 +
EsuBft1686_6a-0001-exonagat-exon-28634Ectocarpus subulatus male Bft15bexonScaffold_444 339001..339486 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_6a-0001-exonagat-five_prime_utr-3724Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 337866..338396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_6a-0001-cdsEsuBft1686_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 338397..338428 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_6a-0001-exonagat-three_prime_utr-5731Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 339032..339486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_6a-0001EsuBft1686_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 338397..339031 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1686_6a-0001 ID=EsuBft1686_6a-0001|Name=EsuBft1686_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1049bp|location=Sequence derived from alignment at Scaffold_444:337866..339486+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCAACCGCGGTGAACTGTTGTCCTACTCACACTGCAGCGGGTGGTCCAA
GAATTGTCCGAAATCTTGCTCTGTGGGCGCATAACCAGAGCTGCCTCTCA
GTAGAGCCGGTACACCAGGATTGAAGGGGTGCAGCGCACCCAAGCAGCCC
AAAACAGCGGGGGCTGGGCTTGTTCCGATTGTTAGCGTGTTGGCTGCATA
GCTGAGGACTTCGTCTTTCTCCAGCACTTTGTTTCACTGGGGATTTCGTC
CTATCGGCTACGAAATCGTCTATTCGGTCAGCAGCAAAAAAACGGTCAAA
TTGATTGTTTTTGGGGGGTTCGCACCAGATGACCCGCGGCTTTCTCGGTT
CCTGTGGGAGATCTGTGCATGGCAAAGAAGCGCCAGGAGGGGGGCTAGGC
CTGTGCTTTGCCTGTGGACGTCCCGGCAGCCGCGACGGGTGCTCGAGCAG
GTGAAAGCACGTTAGACAGGGGAAAATTGGGCGGAGCTGGGCGAGTGGTT
TGCCATAGTCTAGTAGGGGAAGAGTGGCCTCATGAGCGCGACCTCTGTGG
AGACCCTCTCAAGGTGCGAGCTCTTCTGGAACACGTGGATGTAAAAGGCG
GCGTGCTCGATTGCTGTGGCGCCGGACAGGACGCAGTCAGCACGGTGCTG
ACAGCGCGCGGTCTTCGTGTTGCTACGAACGACTTAAGCCCCACATAAGC
ATATGTGTGTCTTGCGGCCTCTTTCGAGGCCACCACGCGCGGGTGTACAT
GCTGGCTTCCTAGACTCCGAGCCCCCCACCCTGCTGGCAGGTCTACCGTT
GTCTAAAAAATCACACCACGGTTGATTTATTGTCTGCATGAACGAAGTGT
TTCATAGCGTTTTGTTTCTTGGCAGCGTGAACGATGTGTTTCACGATTTT
TTATTTTATTTTTTACAGGGAAGTGATGTGTCCCAAAACACAGCGCTTCT
GGCAAGTACCTGGACGAAAAATCCCCAGAAACTGATGAAGCTTTTATAAA
TCCCAAACAATACTGTATAACTAACACAACCCCAACTCCCGGTCTTTCC
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protein sequence of EsuBft1686_6a-0001

>EsuBft1686_6 ID=EsuBft1686_6|Name=EsuBft1686_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=20bp
MSATSVETLSRCELFWNTWM
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mRNA from alignment at Scaffold_444:337866..339486+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1686_6a-0001 ID=EsuBft1686_6a-0001|Name=EsuBft1686_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1621bp|location=Sequence derived from alignment at Scaffold_444:337866..339486+ (Ectocarpus subulatus male Bft15b)
TTCAACCGCGGTGAACTGTTGTCCTACTCACACTGCAGCGGGTGGTCCAA
GAATTGTCCGAAATCTTGCTCTGTGGGCGCATAACCAGAGCTGCCTCTCA
GTAGAGCCGGTACACCAGGATTGAAGGGGTGCAGCGCACCCAAGCAGCCC
AAAACAGCGGGGGCTGGGCTTGTTCCGATTGTTAGCGTGTTGGCTGCATA
GCTGAGGACTTCGTCTTTCTCCAGCACTTTGTTTCACTGGGGATTTCGTC
CTATCGGCTACGAAATCGTCTATTCGGTCAGCAGCAAAAAAACGGTCAAA
TTGATTGTTTTTGGGGGGTTCGCACCAGATGACCCGCGGCTTTCTCGGTT
CCTGTGGGAGATCTGTGCATGGCAAAGAAGCGCCAGGAGGGGGGCTAGGC
CTGTGCTTTGCCTGTGGACGTCCCGGCAGCCGCGACGGGTGCTCGAGCAG
GTGAAAGCACGTTAGACAGGGGAAAATTGGGCGGAGCTGGGCGAGTGGTT
TGCCATAGTCTAGTAGGGGAAGAGTGGCCTCATGAGCGCGACCTCTGTGG
AGACCCTCTCAAGGTGGGAGAGTGCATCTGTACACGGCCCGACTGCGTCG
GCGGGATGTACAAAAAGTTCAAGAGGCACCGAGAGAAGGAAGAAAACGGG
TCTAGGGACAACATGGTGGTTGGGCAGCTGTCACCGATGGGCCGATACCC
TTCCGCAGGCTTTCAGGTATTATGTGATGAAGTGGTTGACGGAAGGGTTC
CCTGCAATATGCACGTTGAGCTTTCCTGAAAAGTGCGGTGTCGGGTACGG
AACTTGAATCGCATTCTAAAGGGCAAACCATCGTGTAAGTACAAGCTTTT
TGGCATATTTTGTCGTTGGGGTAGGGCATGACATACACAAAATTACGGCC
TGTTTATACGACCTGTTCACTTCTAAAAACCGAGGCGCTCCAACGAAAGG
TTTCCGTTGCTTTCGTCCGCTACACATCCCGCCTCTCTTCAGGTAGTATG
TGGTCCGTCTAATGGACAGTTCTGCTCTGCTGCCTGCCCACAAAGTGGCT
CATAGTCGGTGTGCTCATCTCTCTCTCTTTGCTATGTTTGGCCGATGTTA
CAATGCGCCCATGCGTCCATGTCATGCGATTTCAGGTGCGAGCTCTTCTG
GAACACGTGGATGTAAAAGGCGGCGTGCTCGATTGCTGTGGCGCCGGACA
GGACGCAGTCAGCACGGTGCTGACAGCGCGCGGTCTTCGTGTTGCTACGA
ACGACTTAAGCCCCACATAAGCATATGTGTGTCTTGCGGCCTCTTTCGAG
GCCACCACGCGCGGGTGTACATGCTGGCTTCCTAGACTCCGAGCCCCCCA
CCCTGCTGGCAGGTCTACCGTTGTCTAAAAAATCACACCACGGTTGATTT
ATTGTCTGCATGAACGAAGTGTTTCATAGCGTTTTGTTTCTTGGCAGCGT
GAACGATGTGTTTCACGATTTTTTATTTTATTTTTTACAGGGAAGTGATG
TGTCCCAAAACACAGCGCTTCTGGCAAGTACCTGGACGAAAAATCCCCAG
AAACTGATGAAGCTTTTATAAATCCCAAACAATACTGTATAACTAACACA
ACCCCAACTCCCGGTCTTTCC
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Coding sequence (CDS) from alignment at Scaffold_444:337866..339486+

>EsuBft1686_6a-0001 ID=EsuBft1686_6a-0001|Name=EsuBft1686_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=63bp|location=Sequence derived from alignment at Scaffold_444:337866..339486+ (Ectocarpus subulatus male Bft15b)
ATGAGCGCGACCTCTGTGGAGACCCTCTCAAGGTGCGAGCTCTTCTGGAA
CACGTGGATGTAA
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