EsuBft1686_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1686_3a-0001
Unique NameEsuBft1686_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:372162..373694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1686_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length148
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_3aEsuBft1686_3aEctocarpus subulatus male Bft15bgeneScaffold_444 372162..373694 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_3a-0001-exonagat-exon-28619Ectocarpus subulatus male Bft15bexonScaffold_444 372162..373194 -
EsuBft1686_3a-0001-exonEsuBft1686_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 373239..373694 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_3a-0001-exonagat-three_prime_utr-5724Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 372162..373035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_3a-0001-cdsEsuBft1686_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 373036..373194 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_3a-0001-exonagat-five_prime_utr-3722Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 373647..373694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1686_3a-0001EsuBft1686_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 373036..373646 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1686_3a-0001 ID=EsuBft1686_3a-0001|Name=EsuBft1686_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1489bp|location=Sequence derived from alignment at Scaffold_444:372162..373694- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAACGTTGATACTGCCATCTCATCGCGCCCTCGCTTGCGTGTCCCTCCAT
GAACCTCACTTTCTCTGCAGCTCCTGACGGTGTGGTCGACGCTCTATTGG
CTGAGCAGAGCGACTCGCTAAAGTTGTTGCGCTCCGGAGGAACGATCAAC
AACTTCGACCTCCCAACGGAATGGCTCCACACGGCGATCCCGCCAGCGCC
TTTGCCTCCCTCTGCGGGCGCGACCGCGGACGGAGTGGACAACACACCCT
CTCGGGCGAACGGGGTGTCAGAGCCCTCTAAGAGAAAGGCCTTAAACCCA
GTGCGTCCAACGTCGCTAACACCACCCAGCGTTGGCGACATCGCATTCTT
CAAGGCGGAGGAAGCTCCGTTTGTGCTGGGGGAGGTGCTGAGCATAGCTG
CAGACGCCTCGCCGGTGAACGTCAACATCCACTGGTATGGGCCTATCAAC
AATACCGGCGGGAGCGGGCAGCGCGACTGTCGAGGACTATGCCGTGGCGC
GTTTCAGCAAGGATTTCATCCTAACGAGCGGCGCGAAGCGCAGAACGCAC
GATGCCAGCGACGAGCCTATCACACGCATTATCGCATGCTGCAGTTCGCT
AACTTCAACGGGTAACATCCCGGCGAGAATTAAAAAAGTGCTGATGGAGA
CTTGCCGGCCTGCACCTTCGTCGTCCTCGGAGAGCGAAGCAAGTGACTCG
GACGACGACGGGTCTGGAAGCGGACTCTGAGGAAGACGAGTCCGATGACG
ACGGCTATGGTTCAGAGTAGTCCTGGCGCCTAGCAGGGACTAGATTGATG
TCGAGACCGGGGCGTTCTGGGGATCAAGAAGATTTGTACTAGCGGTTTTG
CGCCGTAAGATGGTCAACATTTGTCAACTTCGAGCTCTGTACCCAAATCT
TGTCGTAGGGGCTGTGGGTCTTTCCATCATAGTGACATAACTTTCGAAGT
GCCGTGTGCTCAGATTTTTATTTTTTGCTAGTGCGTCAGGGAATCTATCG
AAATTGACCGGAAAACACGCGGAAGAACTCGTAAGAAATCTGTGTCTGCC
CGGGGGTTAGGGGGGGTGGGGGTGTTGAACCAGGTGCGCTTTGGGGTCCT
TGGCGGCGGAACTATCGTGATTTTCGGCGTTGCCGATGGTGTTAGCTCGG
GCGAAAGGGCGTGTGTTCGATTTGGAAGACGCCCGAGGATGTTTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1686_3a-0001

>EsuBft1686_3 ID=EsuBft1686_3|Name=EsuBft1686_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=188bp
MNLTFSAAPDGVVDALLAEQSDSLKLLRSGGTINNFDLPTEWLHTAIPPA
PLPPSAGATADGVDNTPSRANGVSEPSKRKALNPVRPTSLTPPSVGDIAF
FKAEEAPFVLGEVLSIAADASPVNVNIHWYGPINNTGGSGQRDCRGLCRG
AFQQGFHPNERREAQNARCQRRAYHTHYRMLQFANFNG
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mRNA from alignment at Scaffold_444:372162..373694-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1686_3a-0001 ID=EsuBft1686_3a-0001|Name=EsuBft1686_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1533bp|location=Sequence derived from alignment at Scaffold_444:372162..373694- (Ectocarpus subulatus male Bft15b)
AAACGTTGATACTGCCATCTCATCGCGCCCTCGCTTGCGTGTCCCTCCAT
GAACCTCACTTTCTCTGCAGCTCCTGACGGTGTGGTCGACGCTCTATTGG
CTGAGCAGAGCGACTCGCTAAAGTTGTTGCGCTCCGGAGGAACGATCAAC
AACTTCGACCTCCCAACGGAATGGCTCCACACGGCGATCCCGCCAGCGCC
TTTGCCTCCCTCTGCGGGCGCGACCGCGGACGGAGTGGACAACACACCCT
CTCGGGCGAACGGGGTGTCAGAGCCCTCTAAGAGAAAGGCCTTAAACCCA
GTGCGTCCAACGTCGCTAACACCACCCAGCGTTGGCGACATCGCATTCTT
CAAGGCGGAGGAAGCTCCGTTTGTGCTGGGGGAGGTGCTGAGCATAGCTG
CAGACGCCTCGCCGGTGAACGTCAACATCCACTGGTATGGGCCTATCAAC
AATACCGTTAGGGCGGGAGCNAGATATGGGCCTATCACCAATACCGTTAG
GGCGGGAGCGGGCAGCGCGACTGTCGAGGACTATGCCGTGGCGCGTTTCA
GCAAGGATTTCATCCTAACGAGCGGCGCGAAGCGCAGAACGCACGATGCC
AGCGACGAGCCTATCACACGCATTATCGCATGCTGCAGTTCGCTAACTTC
AACGGGTAACATCCCGGCGAGAATTAAAAAAGTGCTGATGGAGACTTGCC
GGCCTGCACCTTCGTCGTCCTCGGAGAGCGAAGCAAGTGACTCGGACGAC
GACGGGTCTGGAAGCGGACTCTGAGGAAGACGAGTCCGATGACGACGGCT
ATGGTTCAGAGTAGTCCTGGCGCCTAGCAGGGACTAGATTGATGTCGAGA
CCGGGGCGTTCTGGGGATCAAGAAGATTTGTACTAGCGGTTTTGCGCCGT
AAGATGGTCAACATTTGTCAACTTCGAGCTCTGTACCCAAATCTTGTCGT
AGGGGCTGTGGGTCTTTCCATCATAGTGACATAACTTTCGAAGTGCCGTG
TGCTCAGATTTTTATTTTTTGCTAGTGCGTCAGGGAATCTATCGAAATTG
ACCGGAAAACACGCGGAAGAACTCGTAAGAAATCTGTGTCTGCCCGGGGG
TTAGGGGGGGTGGGGGTGTTGAACCAGGTGCGCTTTGGGGTCCTTGGCGG
CGGAACTATCGTGATTTTCGGCGTTGCCGATGGTGTTAGCTCGGGCGAAA
GGGCGTGTGTTCGATTTGGAAGACGCCCGAGGATGTTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_444:372162..373694-

>EsuBft1686_3a-0001 ID=EsuBft1686_3a-0001|Name=EsuBft1686_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=567bp|location=Sequence derived from alignment at Scaffold_444:372162..373694- (Ectocarpus subulatus male Bft15b)
ATGAACCTCACTTTCTCTGCAGCTCCTGACGGTGTGGTCGACGCTCTATT
GGCTGAGCAGAGCGACTCGCTAAAGTTGTTGCGCTCCGGAGGAACGATCA
ACAACTTCGACCTCCCAACGGAATGGCTCCACACGGCGATCCCGCCAGCG
CCTTTGCCTCCCTCTGCGGGCGCGACCGCGGACGGAGTGGACAACACACC
CTCTCGGGCGAACGGGGTGTCAGAGCCCTCTAAGAGAAAGGCCTTAAACC
CAGTGCGTCCAACGTCGCTAACACCACCCAGCGTTGGCGACATCGCATTC
TTCAAGGCGGAGGAAGCTCCGTTTGTGCTGGGGGAGGTGCTGAGCATAGC
TGCAGACGCCTCGCCGGTGAACGTCAACATCCACTGGTATGGGCCTATCA
ACAATACCGGCGGGAGCGGGCAGCGCGACTGTCGAGGACTATGCCGTGGC
GCGTTTCAGCAAGGATTTCATCCTAACGAGCGGCGCGAAGCGCAGAACGC
ACGATGCCAGCGACGAGCCTATCACACGCATTATCGCATGCTGCAGTTCG
CTAACTTCAACGGGTAA
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