EsuBft1631_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1631_5a-0001
Unique NameEsuBft1631_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:14446..16479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FP30
ProteomeIdEsuBft1631_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSSF109854
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Notefk506-binding protein 5 os:rhizopus delemar (strain ra 99-880 atcc mya-4621 fgsc 9543 nrrl 43880) gn:fkbp5 pe:3 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length2034
Hectar predicted targeting categorymitochondrion
Evalue1.13e-149
EggNOG OGs2CY9V@1|root,2S326@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002280.1
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1631_5aEsuBft1631_5aEctocarpus subulatus male Bft15bgeneScaffold_265 14446..16479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1631_5a-0001-exonEsuBft1631_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 14446..16479 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1631_5a-0001-exonagat-three_prime_utr-5392Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_265 14446..15625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1631_5a-0001-cdsEsuBft1631_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 15626..16384 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1631_5a-0001-exonagat-five_prime_utr-3502Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_265 16385..16479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1631_5a-0001EsuBft1631_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 15626..16384 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1631_5a-0001 ID=EsuBft1631_5a-0001|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2034bp|location=Sequence derived from alignment at Scaffold_265:14446..16479- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCGGCACTTGTTGGTGCAAGCAGCGAGATTCGTCCGAAGAAGCTTTGGA
GTGTGTGTGTACCACAGCCATAGACACAGCAGCTTTAGCCCTGCTATGCA
CTTCTCACCGAGACTTGTCAACACAACGGTCACGTTCCTCCGGGTTGTCG
CTGTACCGCCTTTTCGGCGCCGATGTTTCCTCAGCACAAGAACATGCTCG
CGCGCCAGCACCAATAGTAGCAGCAACGCCGACGACGCCACCGCCGGCGA
CGGAGGGACGTGTGTAGTGTCGGCAGCGATGCGTTTCCTTCAAGGCAAGA
AGAGGCTAGTGGACTGCCTTAGCCCTGCGGACTACGCCCGCATGGACCCT
GCCACCGGAGCTTCTGTAGGAGGGCACCTCAGGCATACACTCGATCACTT
CTCGAAATGCCTTCAGGCGGCGCAACAGCAACCTGCCCCCGATGAGGACG
CCGTGCCCACAACAACTCCGGTGACCATACGGTATGATCATCGGGTGAGG
GGTGGAACTATTGAGACCGACCCGGCAGCTGCATCCAGGTCCATCTCCTC
GCTTTTGCAACAACTCCAAAGCTTGCCTAGGGCCGACTATCTCCGTGCGA
AGAGGGTTGCACCAATGTTCATGCTCGGGTTGGGGGGGGGTGATAACGGC
ATCAAGGAGGAGTACGGGTTCGAGAGCAACCTCGAGCGTGAGCTCTTCTT
CTGCTGCCACCACGGCACCCATCATGACGCAATGATACGGCTGATACTGC
GGGGGATGGGGGAGAAGGGCGAGAATGCGCTGAGTCAAGCCGGCGAGGGT
TTCGGCGTTGCTCCAAGCACCATCGATTTTCTGAAGAAGAGGCATAAAAA
ATAAGGCAGTCAGTCAGGAGGAGAGGGGGAGCAACAGCAGCAGCAGGGCA
CGGATTGAGACTGTGGGAGGGGACTTTGGCTGACTGGCAGAAGAAGAGCA
AGGAGATTTCTTCCTTTGTGGCCATTTGTCTTCAACTCCGCTGGTATAGT
CTATGCGTCGATCAACAACCATCGGGGTGCGGCCTGTGAGTTGTAACGTA
CATAGTCTACTTTTACAGATATATCATCACGCAGGCCTCGTTCGGCGCGC
TTGTGATGGTACACCGTAATAAATTTCGGGTTGAGGCCCCAACCTCTGAT
GGGCTGAAAAATTCACACCCGAACTCACTTCTTGTTTGTTTGAACGGAAT
TTGTGGTCCAGCTGTGTGAGTTGCAGGACATTCGCCGTAGCTCTGTAGGC
GCTGACGGATAAATCGTCGGTTGCGGTCTGTTTCAAGTCTAAAGGGATGT
ATGTGGACTTGTGGAGATGCTGACGACTGCCTGGTGTTATTTCTCTCATG
GATTGTTGTTGGGTGTTGGAAGATGTGTCCCTTTTTGTTTCAAGTTGAAT
GTATGTGTCCTCTCGGCAGCGTGTCGCGCGAGCGGAACATGCGTGCAGTC
ACTGATGATGTGCCCAAGCAGAGCACCTCTCGTTTGTGCCATATTTTGTC
ATGGGGTCAAGGGCTACGTGTGAACCTGTGCGTCCACTGTAGAGCTGCAG
CGCGGCCGACGAACTCACTGTTGTGCCACCGGACTATTTTTAGTACCATG
AGCGATAGCTCTGAAAATACAGGAGGTCCGAAGGAGCCGATGGTTTGTCT
GAAATGTAGTTTCTTGGTCAGTGGGGACCGGAGCGGGTGCGCGCTCACTC
TCGATGCTGGCAAAGATGAATTCAACATCTGGTACTCGAACGTGCGACGT
ACCCATGGAAAGTACGGTACTGGCAAGCATGCGTAATTTTGTTGCAACAC
CGAATGCAGCTTCAACAACTGAGCTACACATGCAGATTCGGCTGCTGAGC
GTATACCGGTTCTCGCCCGTTTATGCACGGAAGTCTGAGCTACTTGCGAA
GGCACAATTTACCAATGGAAGATACCAACATATGGAATTCGTAAAATGTT
CTGATTTCCCCACACGAGTATGTCTGACGACATTGCCAGTTGTTGAAGGG
GTCATGCTGACTTAGACTTCTTTGTCACCTATCT
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protein sequence of EsuBft1631_5a-0001

>EsuBft1631_5 ID=EsuBft1631_5|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=252bp
MHFSPRLVNTTVTFLRVVAVPPFRRRCFLSTRTCSRASTNSSSNADDATA
GDGGTCVVSAAMRFLQGKKRLVDCLSPADYARMDPATGASVGGHLRHTLD
HFSKCLQAAQQQPAPDEDAVPTTTPVTIRYDHRVRGGTIETDPAAASRSI
SSLLQQLQSLPRADYLRAKRVAPMFMLGLGGGDNGIKEEYGFESNLEREL
FFCCHHGTHHDAMIRLILRGMGEKGENALSQAGEGFGVAPSTIDFLKKRH
KK
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mRNA from alignment at Scaffold_265:14446..16479-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1631_5a-0001 ID=EsuBft1631_5a-0001|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2034bp|location=Sequence derived from alignment at Scaffold_265:14446..16479- (Ectocarpus subulatus male Bft15b)
CGCGGCACTTGTTGGTGCAAGCAGCGAGATTCGTCCGAAGAAGCTTTGGA
GTGTGTGTGTACCACAGCCATAGACACAGCAGCTTTAGCCCTGCTATGCA
CTTCTCACCGAGACTTGTCAACACAACGGTCACGTTCCTCCGGGTTGTCG
CTGTACCGCCTTTTCGGCGCCGATGTTTCCTCAGCACAAGAACATGCTCG
CGCGCCAGCACCAATAGTAGCAGCAACGCCGACGACGCCACCGCCGGCGA
CGGAGGGACGTGTGTAGTGTCGGCAGCGATGCGTTTCCTTCAAGGCAAGA
AGAGGCTAGTGGACTGCCTTAGCCCTGCGGACTACGCCCGCATGGACCCT
GCCACCGGAGCTTCTGTAGGAGGGCACCTCAGGCATACACTCGATCACTT
CTCGAAATGCCTTCAGGCGGCGCAACAGCAACCTGCCCCCGATGAGGACG
CCGTGCCCACAACAACTCCGGTGACCATACGGTATGATCATCGGGTGAGG
GGTGGAACTATTGAGACCGACCCGGCAGCTGCATCCAGGTCCATCTCCTC
GCTTTTGCAACAACTCCAAAGCTTGCCTAGGGCCGACTATCTCCGTGCGA
AGAGGGTTGCACCAATGTTCATGCTCGGGTTGGGGGGGGGTGATAACGGC
ATCAAGGAGGAGTACGGGTTCGAGAGCAACCTCGAGCGTGAGCTCTTCTT
CTGCTGCCACCACGGCACCCATCATGACGCAATGATACGGCTGATACTGC
GGGGGATGGGGGAGAAGGGCGAGAATGCGCTGAGTCAAGCCGGCGAGGGT
TTCGGCGTTGCTCCAAGCACCATCGATTTTCTGAAGAAGAGGCATAAAAA
ATAAGGCAGTCAGTCAGGAGGAGAGGGGGAGCAACAGCAGCAGCAGGGCA
CGGATTGAGACTGTGGGAGGGGACTTTGGCTGACTGGCAGAAGAAGAGCA
AGGAGATTTCTTCCTTTGTGGCCATTTGTCTTCAACTCCGCTGGTATAGT
CTATGCGTCGATCAACAACCATCGGGGTGCGGCCTGTGAGTTGTAACGTA
CATAGTCTACTTTTACAGATATATCATCACGCAGGCCTCGTTCGGCGCGC
TTGTGATGGTACACCGTAATAAATTTCGGGTTGAGGCCCCAACCTCTGAT
GGGCTGAAAAATTCACACCCGAACTCACTTCTTGTTTGTTTGAACGGAAT
TTGTGGTCCAGCTGTGTGAGTTGCAGGACATTCGCCGTAGCTCTGTAGGC
GCTGACGGATAAATCGTCGGTTGCGGTCTGTTTCAAGTCTAAAGGGATGT
ATGTGGACTTGTGGAGATGCTGACGACTGCCTGGTGTTATTTCTCTCATG
GATTGTTGTTGGGTGTTGGAAGATGTGTCCCTTTTTGTTTCAAGTTGAAT
GTATGTGTCCTCTCGGCAGCGTGTCGCGCGAGCGGAACATGCGTGCAGTC
ACTGATGATGTGCCCAAGCAGAGCACCTCTCGTTTGTGCCATATTTTGTC
ATGGGGTCAAGGGCTACGTGTGAACCTGTGCGTCCACTGTAGAGCTGCAG
CGCGGCCGACGAACTCACTGTTGTGCCACCGGACTATTTTTAGTACCATG
AGCGATAGCTCTGAAAATACAGGAGGTCCGAAGGAGCCGATGGTTTGTCT
GAAATGTAGTTTCTTGGTCAGTGGGGACCGGAGCGGGTGCGCGCTCACTC
TCGATGCTGGCAAAGATGAATTCAACATCTGGTACTCGAACGTGCGACGT
ACCCATGGAAAGTACGGTACTGGCAAGCATGCGTAATTTTGTTGCAACAC
CGAATGCAGCTTCAACAACTGAGCTACACATGCAGATTCGGCTGCTGAGC
GTATACCGGTTCTCGCCCGTTTATGCACGGAAGTCTGAGCTACTTGCGAA
GGCACAATTTACCAATGGAAGATACCAACATATGGAATTCGTAAAATGTT
CTGATTTCCCCACACGAGTATGTCTGACGACATTGCCAGTTGTTGAAGGG
GTCATGCTGACTTAGACTTCTTTGTCACCTATCT
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Coding sequence (CDS) from alignment at Scaffold_265:14446..16479-

>EsuBft1631_5a-0001 ID=EsuBft1631_5a-0001|Name=EsuBft1631_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=759bp|location=Sequence derived from alignment at Scaffold_265:14446..16479- (Ectocarpus subulatus male Bft15b)
ATGCACTTCTCACCGAGACTTGTCAACACAACGGTCACGTTCCTCCGGGT
TGTCGCTGTACCGCCTTTTCGGCGCCGATGTTTCCTCAGCACAAGAACAT
GCTCGCGCGCCAGCACCAATAGTAGCAGCAACGCCGACGACGCCACCGCC
GGCGACGGAGGGACGTGTGTAGTGTCGGCAGCGATGCGTTTCCTTCAAGG
CAAGAAGAGGCTAGTGGACTGCCTTAGCCCTGCGGACTACGCCCGCATGG
ACCCTGCCACCGGAGCTTCTGTAGGAGGGCACCTCAGGCATACACTCGAT
CACTTCTCGAAATGCCTTCAGGCGGCGCAACAGCAACCTGCCCCCGATGA
GGACGCCGTGCCCACAACAACTCCGGTGACCATACGGTATGATCATCGGG
TGAGGGGTGGAACTATTGAGACCGACCCGGCAGCTGCATCCAGGTCCATC
TCCTCGCTTTTGCAACAACTCCAAAGCTTGCCTAGGGCCGACTATCTCCG
TGCGAAGAGGGTTGCACCAATGTTCATGCTCGGGTTGGGGGGGGGTGATA
ACGGCATCAAGGAGGAGTACGGGTTCGAGAGCAACCTCGAGCGTGAGCTC
TTCTTCTGCTGCCACCACGGCACCCATCATGACGCAATGATACGGCTGAT
ACTGCGGGGGATGGGGGAGAAGGGCGAGAATGCGCTGAGTCAAGCCGGCG
AGGGTTTCGGCGTTGCTCCAAGCACCATCGATTTTCTGAAGAAGAGGCAT
AAAAAATAA
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