EsuBft1631_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1631_4a-0001
Unique Name	EsuBft1631_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_265	contig	Scaffold_265:16596..17513 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1631_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	91
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_4a	EsuBft1631_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_265 16596..17513 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_4a-0001-exon	EsuBft1631_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 16596..17513 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_4a-0001-cds	EsuBft1631_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_265 16596..16793 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_4a-0001-exon	agat-three_prime_utr-5391	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_265 16794..17513 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1631_4a-0001	EsuBft1631_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_265 16596..16793 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_265:16596..17513+
coding sequence from alignment at Scaffold_265:16596..17513+

spliced messenger RNA

>EsuBft1631_4a-0001 ID=EsuBft1631_4a-0001|Name=EsuBft1631_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=918bp|location=Sequence derived from alignment at Scaffold_265:16596..17513+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTGGTCTCTGTACAAGCCAACAAGCCACCATGCACAACACACTAC
TACTGCTGCCCTTCACCTGTCGCCGTCCTTCCACGTCTACCTGTCCTTGG
CACATGCTGCCACTCGATGCGACAACATCAGGGAACATCACGGACACAGG
GAGTACTTTCCGTACCCACGTACACCGTCAAAATGTCAGAACAACTAAAT
CTCATTCCTCCTGTCGTGCCAAACATAAATGATGTATTATGCACGAAATG
ATCAACTCTTCTTTACATATGGTCTGTGCTGCCCACTGAGGGGAGAGATA
TAACCATACTCCCTGCCTACACACGGGCGAGAGAGATGACCAACCCATTA
CATTTGAACACACGAACACCCACATATCGGTGATGGAACCTCAACCACAC
GCCTTACCTACGACCGACCACGTCAGGAGGCAATGATGAAAGAATGTTCT
CCCGTGCCCTTCGCACATTTATGGGCATGAAATTACACAAAACTGGGAGA
CCACTCCCGTGTGCCGCACAATTTGACACAGATGCATGCATATGCATACC
AAACTCAATTACTTACCAAATCATATTCCTCGCGTTAAATGCATACCAAA
CTGGAAATACACGTGTAAAATGGATGGAGATCCACAACCAACAGGGTGCC
ACACATAAAACACCCGACTAACTAACAGCCCAACACTTTTCGTCTACACC
TTCCCAACATAACATATATAAGACACACAACACAGCTACCAAACTGTCTT
GTTGAGCCTGTTATCCGCAGGGGAGATGTCCATATATGCTGTCTGGGAAA
TCGTGGACACACAACAGGTAGTTTTCTTTGACGCTATGATTCCATTGCTA
ATCTGTCTTTGACTCTTTTCTCTGACGGAGATGGACTCGTTGTGTTGTAT
TTGGAAAAAAAAAAAAAA

protein sequence of EsuBft1631_4a-0001

>EsuBft1631_4 ID=EsuBft1631_4|Name=EsuBft1631_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MYWSLYKPTSHHAQHTTTAALHLSPSFHVYLSLAHAATRCDNIREHHGHR
EYFPYPRTPSKCQNN

mRNA from alignment at Scaffold_265:16596..17513+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1631_4a-0001 ID=EsuBft1631_4a-0001|Name=EsuBft1631_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=918bp|location=Sequence derived from alignment at Scaffold_265:16596..17513+ (Ectocarpus subulatus male Bft15b)
ATGTACTGGTCTCTGTACAAGCCAACAAGCCACCATGCACAACACACTAC
TACTGCTGCCCTTCACCTGTCGCCGTCCTTCCACGTCTACCTGTCCTTGG
CACATGCTGCCACTCGATGCGACAACATCAGGGAACATCACGGACACAGG
GAGTACTTTCCGTACCCACGTACACCGTCAAAATGTCAGAACAACTAAAT
CTCATTCCTCCTGTCGTGCCAAACATAAATGATGTATTATGCACGAAATG
ATCAACTCTTCTTTACATATGGTCTGTGCTGCCCACTGAGGGGAGAGATA
TAACCATACTCCCTGCCTACACACGGGCGAGAGAGATGACCAACCCATTA
CATTTGAACACACGAACACCCACATATCGGTGATGGAACCTCAACCACAC
GCCTTACCTACGACCGACCACGTCAGGAGGCAATGATGAAAGAATGTTCT
CCCGTGCCCTTCGCACATTTATGGGCATGAAATTACACAAAACTGGGAGA
CCACTCCCGTGTGCCGCACAATTTGACACAGATGCATGCATATGCATACC
AAACTCAATTACTTACCAAATCATATTCCTCGCGTTAAATGCATACCAAA
CTGGAAATACACGTGTAAAATGGATGGAGATCCACAACCAACAGGGTGCC
ACACATAAAACACCCGACTAACTAACAGCCCAACACTTTTCGTCTACACC
TTCCCAACATAACATATATAAGACACACAACACAGCTACCAAACTGTCTT
GTTGAGCCTGTTATCCGCAGGGGAGATGTCCATATATGCTGTCTGGGAAA
TCGTGGACACACAACAGGTAGTTTTCTTTGACGCTATGATTCCATTGCTA
ATCTGTCTTTGACTCTTTTCTCTGACGGAGATGGACTCGTTGTGTTGTAT
TTGGAAAAAAAAAAAAAA

Coding sequence (CDS) from alignment at Scaffold_265:16596..17513+

>EsuBft1631_4a-0001 ID=EsuBft1631_4a-0001|Name=EsuBft1631_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_265:16596..17513+ (Ectocarpus subulatus male Bft15b)
ATGTACTGGTCTCTGTACAAGCCAACAAGCCACCATGCACAACACACTAC
TACTGCTGCCCTTCACCTGTCGCCGTCCTTCCACGTCTACCTGTCCTTGG
CACATGCTGCCACTCGATGCGACAACATCAGGGAACATCACGGACACAGG
GAGTACTTTCCGTACCCACGTACACCGTCAAAATGTCAGAACAACTAA