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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 15368.BRADI5G27155.1 |
| ProteomeId | EsuBft1631_2 |
| Protein domains | IPR013103 |
| Protein domains | SSF56672 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 35493|Streptophyta |
| Length | 2094 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.86e-68 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37V5Q@33090|Viridiplantae,3GFFK@35493|Streptophyta,3M7B5@4447|Liliopsida,3IKJW@38820|Poales |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1631_2a-0001 ID=EsuBft1631_2a-0001|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2094bp|location=Sequence derived from alignment at Scaffold_265:34271..36547+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCATGGCGGACGCGGGAATGATCGCAGGAGCCGAAACTCTGGAAGT
CGTGGTCGGGCTCAGGATACCGGCCGCAACCGTCAAAGGACGTTGCAGAT
ACTGCCGTAACAGCACCGAGCACGGGTGGGACGAATGCCCGCTCCGCCGG
AGGCACGAGGCGGAGGACAACAACACAGGACAGGTGCACAACACGCAAGA
CTCCACCACGCAGGCTTGGTACACGCGGGTGGAGGCGGCGGACGATGAGC
TTGAAGATTTCGCCATCGTCTTCGATAACGACAAGCAGGAGCTGAACGCC
CCTGCTGTGGCGTTGCCGAGGGAGCGCGCTGCTGCTGGTGACCAGGAGCA
AGACGCGGCTGCACCGGCGCTGCCGGACGGAGTCGAATTCGCGGAGCCTG
CGGCAGCGACGGACCTCGATATCACTACCCCTCCTGACTCTCCGGCCGAG
AAAGTGACAGAGCTGGTAAGGTGCACTAGCGTGTTTCAGGTGGAACAAGC
TCTTCTGACAGGGGGTGTACTCGGAAACGTCGGGACGGGCAACCCTGGAG
AAATAGGTTCCAGGTCTCCCGACCCGACCAACCAAGACGACGCAACACGT
GGACCAGATGCTGACCACTGGAGGGAGAGTATGCGCGAAGAAAATCGTTC
GCTCACGGAACTCGGCGTATACGATTGGGTGAAACGGCCGGCGGACGGTG
ATATACTTCCGTCAAGATACCTGTACAAACGGAAGTATGCAGCACACGGA
GAACTAGCTATACTGAAGAGTCGTATCGTGGTCCAAGGCTTCCATCAAGA
AGACACGGGGGAAGACAAGGCATCATCAGTGGCGACATTGGAGGCGGTAC
ATCTAGTAGTCGCCGTCGCTGCTCAGAATGGCCTTGTTCTAAAACAGGCT
GACATCAAGACAGCGTTCCTACATGCCAGGATCCCCGCTAACGCAGACCC
GATTTATGTTCGTCCTCCGAAGGGTTTCGAATGCTCTCCAGAACAAGCAC
GGCAGGTTTGGCGGCTAAAGGCATGGCTCTACGGATTGCGTCTCTCCCCG
AAAGGATGGTGCAGCACCTCCCACGACTTCCTGATTGAGAAAGGGTTCGT
ACAGAGTAAAGCAGACCCCTGTCACTACATTCTCGAAGCGGAAGGAGTTA
TCCTTTTCGTGTACGTTGACGACATTCTGCTGTCGGGGAAGGACGAGGAT
AAGGTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAGCACGGTGTT
CTTGGAGGATGCTCAGCACCTGCTTGGTATGAAGCTCGAAAGGAACGTCG
ACGCCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTC
AACCAGTTGGGAATGACCGAATCGCGCCCGGTGAAGACACCGGCGGAACC
TGGACCTATCAGCATCGAGGAGGAGAAGGTTTTATTTCCAGAGGACACCA
AATACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGGGGCTCA
AGACCGAACATAACACACTCGGTGATGATGCTCGCGAAGAGTATGGCGAA
GCCAGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGTATCCAA
AAGGAACGACCTCTATCGGAATCACATACACCGAAGACGCCGACGGCGGA
GATAAAGTCACGGCGTACGTGGACCCTGATTTTGCAGGTGACCAAGACAA
AGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGTGG
ACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCT
GAAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCTGGA
CTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCTG
AAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCGTAAT
TTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGATAGTGTTTGA
GGACAACACAAGCGCTATAGCGTTTGCTAAGGGCGCCAAACTCACGCCCC
GTACTAAACATATCGACGTCAAGTATCACCACGTCCGGTACTAA back to topprotein sequence of EsuBft1631_2a-0001 >EsuBft1631_2 ID=EsuBft1631_2|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=697bp
MRMADAGMIAGAETLEVVVGLRIPAATVKGRCRYCRNSTEHGWDECPLRR
RHEAEDNNTGQVHNTQDSTTQAWYTRVEAADDELEDFAIVFDNDKQELNA
PAVALPRERAAAGDQEQDAAAPALPDGVEFAEPAAATDLDITTPPDSPAE
KVTELVRCTSVFQVEQALLTGGVLGNVGTGNPGEIGSRSPDPTNQDDATR
GPDADHWRESMREENRSLTELGVYDWVKRPADGDILPSRYLYKRKYAAHG
ELAILKSRIVVQGFHQEDTGEDKASSVATLEAVHLVVAVAAQNGLVLKQA
DIKTAFLHARIPANADPIYVRPPKGFECSPEQARQVWRLKAWLYGLRLSP
KGWCSTSHDFLIEKGFVQSKADPCHYILEAEGVILFVYVDDILLSGKDED
KVMMVVDLLKERFSTVFLEDAQHLLGMKLERNVDAGTIFLSQETYAKTVL
NQLGMTESRPVKTPAEPGPISIEEEKVLFPEDTKYYRSATGSLLYLSRGS
RPNITHSVMMLAKSMAKPGPRAMTKLKRVLRYPKGTTSIGITYTEDADGG
DKVTAYVDPDFAGDQDKGYSTTGAVLYLAGAPVDWISKKQTVLAISTFEA
EAFALSKACNIVIHFLDWISKKQTVLAISTFEAEAFALSKACNIVIHFRN
LLKSLNMKQEQPTIVFEDNTSAIAFAKGAKLTPRTKHIDVKYHHVRY back to topmRNA from alignment at Scaffold_265:34271..36547+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1631_2a-0001 ID=EsuBft1631_2a-0001|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2277bp|location=Sequence derived from alignment at Scaffold_265:34271..36547+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGGCGGACGCGGGAATGATCGCAGGAGCCGAAACTCTGGAAGT
CGTGGTCGGGCTCAGGATACCGGCCGCAACCGTCAAAGGACGTTGCAGAT
ACTGCCGTAACAGCACCGAGCACGGGTGGGACGAATGCCCGCTCCGCCGG
AGGCACGAGGCGGAGGACAACAACACAGGACAGGTGCACAACACGCAAGA
CTCCACCACGCAGGCTTGGTACACGCGGGTGGAGGCGGCGGACGATGAGC
TTGAAGATTTCGCCATCGTCTTCGATAACGACAAGCAGGAGCTGAACGCC
CCTGCTGTGGCGTTGCCGAGGGAGCGCGCTGCTGCTGGTGACCAGGAGCA
AGACGCGGCTGCACCGGCGCTGCCGGACGGAGTCGTAATATATGATCCGC
AAGTATGGGAGTGCGCTGCTGGAGATGAGCAGACGCACGATGTGGACCGA
GTCGGCGCTGCCGAATGTGCGCGCCACTGACGACCTGCAGGAATTCGCGG
AGCCTGCGGCAGCGACGGACCTCGATATCACTACCCCTCCTGACTCTCCG
GCCGAGAAAGTGACAGAGCTGGTAAGGTGCACTAGCGTGTTTCAGGTGGA
ACAAGCTCTTCTGACAGGGGGTGTACTCGGAAACGTCGGGACGGGCAACC
CTGGAGAAATAGGTTCCAGGTCTCCCGACCCGACCAACCAAGACGACGCA
ACACGTGGACCAGATGCTGACCACTGGAGGGAGAGTATGCGCGAAGAAAA
TCGTTCGCTCACGGAACTCGGCGTATACGATTGGGTGAAACGGCCGGCGG
ACGGTGATATACTTCCGTCAAGATACCTGTACAAACGGAAGTATGCAGCA
CACGGAGAACTAGCTATACTGAAGAGTCGTATCGTGGTCCAAGGCTTCCA
TCAAGAAGACACGGGGGAAGACAAGGCATCATCAGTGGCGACATTGGAGG
CGGTACATCTAGTAGTCGCCGTCGCTGCTCAGAATGGCCTTGTTCTAAAA
CAGGCTGACATCAAGACAGCGTTCCTACATGCCAGGATCCCCGCTAACGC
AGACCCGATTTATGTTCGTCCTCCGAAGGGTTTCGAATGCTCTCCAGAAC
AAGCACGGCAGGTTTGGCGGCTAAAGGCATGGCTCTACGGATTGCGTCTC
TCCCCGAAAGGATGGTGCAGCACCTCCCACGACTTCCTGATTGAGAAAGG
GTTCGTACAGAGTAAAGCAGACCCCTGTCACTACATTCTCGAAGCGGAAG
GAGTTATCCTTTTCGTGTACGTTGACGACATTCTGCTGTCGGGGAAGGAC
GAGGATAAGGTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAGCAC
GGTGTTCTTGGAGGATGCTCAGCACCTGCTTGGTATGAAGCTCGAAAGGA
ACGTCGACGCCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACC
GTGCTCAACCAGTTGGGAATGACCGAATCGCGCCCGGTGAAGACACCGGC
GGAACCTGGACCTATCAGCATCGAGGAGGAGAAGGTTTTATTTCCAGAGG
ACACCAAATACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGG
GGCTCAAGACCGAACATAACACACTCGGTGATGATGCTCGCGAAGAGTAT
GGCGAAGCCAGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGT
ATCCAAAAGGAACGACCTCTATCGGAATCACATACACCGAAGACGCCGAC
GGCGGAGATAAAGTCACGGCGTACGTGGACCCTGATTTTGCAGGTGACCA
AGACAAAGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCC
CAGTGGACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTT
GAGGCTGAAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTT
TCGTAATTTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGATAG
TGTTTGAGGACAACACAANGGTGCCCCAGTGGACTGGATATCCAAGAAGC
AAACGGTGCTGGCCATCTCCACGTTTGAGGCTGAAGCCTTTGCCCTGTCC
AAGGCGTGCAATATTGTCATCCACTTTCGTAATTTGCTGAAGTCGCTGAA
CATGAAGCAGGAGCAGCCCACGATAGTGTTTGAGGACAACACAAGCGCTA
TAGCGTTTGCTAAGGGCGCCAAACTCACGCCCCGTACTAAACATATCGAC
GTCAAGTATCACCACGTCCGGTACTAA back to topCoding sequence (CDS) from alignment at Scaffold_265:34271..36547+ >EsuBft1631_2a-0001 ID=EsuBft1631_2a-0001|Name=EsuBft1631_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2094bp|location=Sequence derived from alignment at Scaffold_265:34271..36547+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGGCGGACGCGGGAATGATCGCAGGAGCCGAAACTCTGGAAGT
CGTGGTCGGGCTCAGGATACCGGCCGCAACCGTCAAAGGACGTTGCAGAT
ACTGCCGTAACAGCACCGAGCACGGGTGGGACGAATGCCCGCTCCGCCGG
AGGCACGAGGCGGAGGACAACAACACAGGACAGGTGCACAACACGCAAGA
CTCCACCACGCAGGCTTGGTACACGCGGGTGGAGGCGGCGGACGATGAGC
TTGAAGATTTCGCCATCGTCTTCGATAACGACAAGCAGGAGCTGAACGCC
CCTGCTGTGGCGTTGCCGAGGGAGCGCGCTGCTGCTGGTGACCAGGAGCA
AGACGCGGCTGCACCGGCGCTGCCGGACGGAGTCGAATTCGCGGAGCCTG
CGGCAGCGACGGACCTCGATATCACTACCCCTCCTGACTCTCCGGCCGAG
AAAGTGACAGAGCTGGTAAGGTGCACTAGCGTGTTTCAGGTGGAACAAGC
TCTTCTGACAGGGGGTGTACTCGGAAACGTCGGGACGGGCAACCCTGGAG
AAATAGGTTCCAGGTCTCCCGACCCGACCAACCAAGACGACGCAACACGT
GGACCAGATGCTGACCACTGGAGGGAGAGTATGCGCGAAGAAAATCGTTC
GCTCACGGAACTCGGCGTATACGATTGGGTGAAACGGCCGGCGGACGGTG
ATATACTTCCGTCAAGATACCTGTACAAACGGAAGTATGCAGCACACGGA
GAACTAGCTATACTGAAGAGTCGTATCGTGGTCCAAGGCTTCCATCAAGA
AGACACGGGGGAAGACAAGGCATCATCAGTGGCGACATTGGAGGCGGTAC
ATCTAGTAGTCGCCGTCGCTGCTCAGAATGGCCTTGTTCTAAAACAGGCT
GACATCAAGACAGCGTTCCTACATGCCAGGATCCCCGCTAACGCAGACCC
GATTTATGTTCGTCCTCCGAAGGGTTTCGAATGCTCTCCAGAACAAGCAC
GGCAGGTTTGGCGGCTAAAGGCATGGCTCTACGGATTGCGTCTCTCCCCG
AAAGGATGGTGCAGCACCTCCCACGACTTCCTGATTGAGAAAGGGTTCGT
ACAGAGTAAAGCAGACCCCTGTCACTACATTCTCGAAGCGGAAGGAGTTA
TCCTTTTCGTGTACGTTGACGACATTCTGCTGTCGGGGAAGGACGAGGAT
AAGGTCATGATGGTCGTTGATCTGCTGAAGGAACGGTTCAGCACGGTGTT
CTTGGAGGATGCTCAGCACCTGCTTGGTATGAAGCTCGAAAGGAACGTCG
ACGCCGGTACCATATTCCTTTCTCAAGAGACGTACGCAAAGACCGTGCTC
AACCAGTTGGGAATGACCGAATCGCGCCCGGTGAAGACACCGGCGGAACC
TGGACCTATCAGCATCGAGGAGGAGAAGGTTTTATTTCCAGAGGACACCA
AATACTACCGGTCCGCCACGGGTAGCCTTCTGTATCTCAGCAGGGGCTCA
AGACCGAACATAACACACTCGGTGATGATGCTCGCGAAGAGTATGGCGAA
GCCAGGTCCCAGAGCGATGACAAAGCTGAAGCGGGTACTCCGGTATCCAA
AAGGAACGACCTCTATCGGAATCACATACACCGAAGACGCCGACGGCGGA
GATAAAGTCACGGCGTACGTGGACCCTGATTTTGCAGGTGACCAAGACAA
AGGCTACTCCACAACCGGTGCCGTTCTCTATCTCGCAGGTGCCCCAGTGG
ACTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCT
GAAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCTGGA
CTGGATATCCAAGAAGCAAACGGTGCTGGCCATCTCCACGTTTGAGGCTG
AAGCCTTTGCCCTGTCCAAGGCGTGCAATATTGTCATCCACTTTCGTAAT
TTGCTGAAGTCGCTGAACATGAAGCAGGAGCAGCCCACGATAGTGTTTGA
GGACAACACAAGCGCTATAGCGTTTGCTAAGGGCGCCAAACTCACGCCCC
GTACTAAACATATCGACGTCAAGTATCACCACGTCCGGTACTAA back to top
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