EsuBft1629_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1629_4a-0001
Unique Name	EsuBft1629_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:555432..556960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_005630-tr
ProteomeId	EsuBft1629_4
Protein domains	Coil
Protein domains	IPR027124
Protein domains	PTHR23227
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Note	craniofacial development protein 2 os:bos taurus gn:cfdp2 pe:1 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1529
Hectar predicted targeting category	other localisation
Evalue	2.48e-20
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3CYKV@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00004,RC00039,RC00041,RC00063
KEGG ko	ko:K13506,ko:K15407
KEGG Reaction	R00851,R03789,R09380,R10209
KEGG Pathway	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG Module	M00089
EC	2.3.1.15,2.4.2.29
Description	protein phosphatase regulator activity
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1629_4a	EsuBft1629_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 555432..556960 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1629_4a-0001-exon	EsuBft1629_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 555432..556960 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1629_4a-0001-cds	EsuBft1629_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 555432..556898 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1629_4a-0001-exon	agat-three_prime_utr-5363	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 556899..556960 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1629_4a-0001	EsuBft1629_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 555432..556898 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:555432..556960+
coding sequence from alignment at Scaffold_129:555432..556960+

spliced messenger RNA

>EsuBft1629_4a-0001 ID=EsuBft1629_4a-0001|Name=EsuBft1629_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1529bp|location=Sequence derived from alignment at Scaffold_129:555432..556960+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTC
TACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTC
CTTCTGGACTGCTCCCGACGCAGCGATCCGGGAGGTTCACAGCCGTGACC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGGAGGCGAGAC
GGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGACATTATGAA
CAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACCAACTCTCCC
TGACCAGCACCTGCTTCCGGAAATGTGGAGTGCAGCACACATTCCAGAGC
TCCAACAAGGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCA
GGCGGACCGGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCA
AAGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGT
GTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCGGATCCG
TATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCC
AAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACG
GGAGAGACCGCCGCCGAGCTGATTGCTACGGTGATGTCGGCCGCCGCTGA
GACCGTGCCGCTGGCGAGGTGCGCACGAGGGCATAGAGGCTGGTACACGA
GCGAAGCGCAGCACGAGATCTCCGAAGTGTCTCAGAAGATTGAGGCGGCC
CAGCAGCAACTGCGTGGGGCCTCAAGGAACAGCGCCCTCGAGGCGACCCT
GAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGA
GAGCACTGGAAACGTTCTTCGAGGGCTGTCTACGGCAGCTCGAGAAGAAG
AGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCGGAAGATGATCGA
CGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACG
GCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGG
TTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGC
TGACAAGGTCAAGCGGTGGTCCACGTGCGTGCCACTCGACGACATCCCAT
CTCTACTCGAGGTTTAGCAAGCGGTACGGGAAATGGCCAACAGAAAGGCC
GTCGGGCCGGACGACCTACCGGCTGAGTT

protein sequence of EsuBft1629_4a-0001

>EsuBft1629_4 ID=EsuBft1629_4|Name=EsuBft1629_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=488bp
MTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGV
HGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAP
TETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGRRRD
GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTSTCFRKCGVQHTFQS
SNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPR
VAPNRRVRGNSGSSRIRIDLERLRKDKHLRVAFQNRASSRPPPTALRRPT
GETAAELIATVMSAAAETVPLARCARGHRGWYTSEAQHEISEVSQKIEAA
QQQLRGASRNSALEATLKAMLKAARKKRSIARWRALETFFEGCLRQLEKK
SREGDQAGFYRHRKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARW
FHKLLNTKSPTIDLHAADKVKRWSTCVPLDDIPSLLEV

mRNA from alignment at Scaffold_129:555432..556960+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1629_4a-0001 ID=EsuBft1629_4a-0001|Name=EsuBft1629_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1529bp|location=Sequence derived from alignment at Scaffold_129:555432..556960+ (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTC
TACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTC
CTTCTGGACTGCTCCCGACGCAGCGATCCGGGAGGTTCACAGCCGTGACC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGGAGGCGAGAC
GGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGACATTATGAA
CAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACCAACTCTCCC
TGACCAGCACCTGCTTCCGGAAATGTGGAGTGCAGCACACATTCCAGAGC
TCCAACAAGGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCA
GGCGGACCGGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCA
AAGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGT
GTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCGGATCCG
TATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCC
AAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACG
GGAGAGACCGCCGCCGAGCTGATTGCTACGGTGATGTCGGCCGCCGCTGA
GACCGTGCCGCTGGCGAGGTGCGCACGAGGGCATAGAGGCTGGTACACGA
GCGAAGCGCAGCACGAGATCTCCGAAGTGTCTCAGAAGATTGAGGCGGCC
CAGCAGCAACTGCGTGGGGCCTCAAGGAACAGCGCCCTCGAGGCGACCCT
GAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGA
GAGCACTGGAAACGTTCTTCGAGGGCTGTCTACGGCAGCTCGAGAAGAAG
AGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCGGAAGATGATCGA
CGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACG
GCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGG
TTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGC
TGACAAGGTCAAGCGGTGGTCCACGTGCGTGCCACTCGACGACATCCCAT
CTCTACTCGAGGTTTAGCAAGCGGTACGGGAAATGGCCAACAGAAAGGCC
GTCGGGCCGGACGACCTACCGGCTGAGTT

Coding sequence (CDS) from alignment at Scaffold_129:555432..556960+

>EsuBft1629_4a-0001 ID=EsuBft1629_4a-0001|Name=EsuBft1629_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1467bp|location=Sequence derived from alignment at Scaffold_129:555432..556960+ (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTC
TACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTACGCCCCC
ACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTC
CTTCTGGACTGCTCCCGACGCAGCGATCCGGGAGGTTCACAGCCGTGACC
ATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGGAGGCGAGAC
GGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGACATTATGAA
CAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACCAACTCTCCC
TGACCAGCACCTGCTTCCGGAAATGTGGAGTGCAGCACACATTCCAGAGC
TCCAACAAGGGAAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCA
GGCGGACCGGCGTTTCGTGCGCAATGTCTCCGTCAAACGTGTCGACTTCA
AAGACTCTGACCACAACCTCGTGCTTACGACTGTCCGCCTCCCCCCCCGT
GTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCGGATCCG
TATCGACCTCGAGCGGTTGAGGAAGGACAAACACCTACGGGTCGCCTTCC
AAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACG
GGAGAGACCGCCGCCGAGCTGATTGCTACGGTGATGTCGGCCGCCGCTGA
GACCGTGCCGCTGGCGAGGTGCGCACGAGGGCATAGAGGCTGGTACACGA
GCGAAGCGCAGCACGAGATCTCCGAAGTGTCTCAGAAGATTGAGGCGGCC
CAGCAGCAACTGCGTGGGGCCTCAAGGAACAGCGCCCTCGAGGCGACCCT
GAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGA
GAGCACTGGAAACGTTCTTCGAGGGCTGTCTACGGCAGCTCGAGAAGAAG
AGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCGGAAGATGATCGA
CGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACGAGGACG
GCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGG
TTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGC
TGACAAGGTCAAGCGGTGGTCCACGTGCGTGCCACTCGACGACATCCCAT
CTCTACTCGAGGTTTAG