EsuBft1629_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1629_3a-0001
Unique NameEsuBft1629_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:557025..559137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1629_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length168
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1629_3aEsuBft1629_3aEctocarpus subulatus male Bft15bgeneScaffold_129 557025..559137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1629_3a-0001EsuBft1629_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 557025..557970 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1629_3a-0001-exonagat-exon-14121Ectocarpus subulatus male Bft15bexonScaffold_129 557025..557087 +
EsuBft1629_3a-0001-exonagat-exon-14120Ectocarpus subulatus male Bft15bexonScaffold_129 557269..558254 +
EsuBft1629_3a-0001-exonEsuBft1629_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 558498..559137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1629_3a-0001-cdsEsuBft1629_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 557025..557087 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1629_3a-0001-exonagat-three_prime_utr-5361Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 557971..558254 +
EsuBft1629_3a-0001-exonagat-three_prime_utr-5362Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 558498..559137 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1629_3a-0001 ID=EsuBft1629_3a-0001|Name=EsuBft1629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1689bp|location=Sequence derived from alignment at Scaffold_129:557025..559137+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAA
GGTGCTGCTTAAGGCTGAAGTGGTGGAGACTCTCCTGTATGGATACACCT
CGTGGAGCCTAACAGCGGAGCACTACACGAAGCTTAATGGGACCCACCGC
CAGTTCCTCACACGGTGCATCGGCTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCATCGAGGCCACCGTGCGCAAAC
GGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGATGCCGCCTCC
TCAAGCTCATGCTGTTAGGAGCGATGGCGGGGGTCGTGGGATACTGGGGC
GGGCAGGAGGGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTT
CAACATGGGAGACGAAGTGGAAGGTGGTACATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTGCAACAAGGTCGAGGACTGGGCGGTATGGCTCGTG
AGGAAATGGCACAGGCAGAAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGC
GAGGGAAGCAGAAGCAGAGAGTACGGCCATCTCAGGACCGAAGAGAAAGA
GAGCCGGGCAAGCGGCGGTGGGGGGGGAAGGAACGGTGACCGGGCAGTGC
TGTAGAACCGAGTAGGGCGGCCAAGGCAGCACTTGTGGCGAACTATGTAC
CCGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATACTATAATG
CTTTATGCATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCATT
TTTCATGGCCTCCCTGCCTGTGTTGGGTACCTTGATCTCGCTTTTGCTGT
GGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGT
CCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCTGA
TTAACAATGGAATCATAGCGTCAGAGAAAACTACCTGTGTGTCTACGATT
TCCCAGACAGCATATAGGGACATCTCCCCTGTGGGTAACAGGCTCAACAG
ATCAGTTTGGTAGCTGTCTTGTGTGTCTCATATATGTTATGTTGTGGAAT
TTCATGTCGTTAAATGTGAGAAGGGCACGGGAGAACATTTCTCATCATTG
CCTCCTGATGACGTGGTCGCCGATAGAGGCGTGTGGTTGATGAGGTTTCA
TAACCGACATGTGGGTGTGTGTTAAATGCAGTGGGTGTGTTCACCTCTCT
CGCCCATGTGTAGGCAGGAGGTATGGCTAATTCTCCCATTTGTAGGCAGC
GTGGACCATACTTGTAAATATAGACAGAGTTCATCATTTCATGCATGTTA
CATCATTTGTGTTTGACAAGGGAGGAATGAGAGGTTGTGCGTATGGGTAC
GGGGGTACTCCCTGTGTCCGTGTTGTTCCCAGATGTTGCCGCATCAAGTG
GCAGCATGTGTCATGGACAGGTAGACGTGGAAGGACGGCGACAGGTGAAC
GGCAGCAGTAGTATGTTGTGCATGGTGGCATGTTGGGCTTGTGCAGAGGC
GCAGTCCATCTTCGACCACACAAAAAAAGTTTGCTCGTA
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protein sequence of EsuBft1629_3a-0001

>EsuBft1629_3 ID=EsuBft1629_3|Name=EsuBft1629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=254bp
MECGNYRGISLVAHAGKVLLKAEVVETLLYGYTSWSLTAEHYTKLNGTHR
QFLTRCIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXHRGHRAQTETVFRGLCYAHGGCRLLKLMLLGAMAGVVGYWG
GQEGDWVSRLGEDLVAFNMGDEVEGGTWKESAKDPEVWCNKVEDWAVWLV
RKWHRQKAEASAKRQRAREAEAESTAISGPKRKRAGQAAVGGEGTVTGQC
CRTE
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mRNA from alignment at Scaffold_129:557025..559137+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1629_3a-0001 ID=EsuBft1629_3a-0001|Name=EsuBft1629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2113bp|location=Sequence derived from alignment at Scaffold_129:557025..559137+ (Ectocarpus subulatus male Bft15b)
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAA
GGTGCTGCTTAAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAA
GTGGTGGAGACTCTCCTGTATGGATACACCTCGTGGAGCCTAACAGCGGA
GCACTACACGAAGCTTAATGGGACCCACCGCCAGTTCCTCACACGGTGCA
TCGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGG
CTTTGTTATGCGCATGGAGGATGCCGCCTCCTCAAGCTCATGCTGTTAGG
AGCGATGGCGGGGGTCGTGGGATACTGGGGCGGGCAGGAGGGCGACTGGG
TGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAGTG
GAAGGTGGTACATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTGCAA
CAAGGTCGAGGACTGGGCGGTATGGCTCGTGAGGAAATGGCACAGGCAGA
AGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAG
AGTACGGCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGCAAGCGGCGGT
GGGGGGGGAAGGAACGGTGACCGGGCAGTGCTGTAGAACCGAGTAGGGCG
GCCAAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGCGC
CCTGTTTCCCTCCCTGCTGTATACTATAATGCTTTATGCATGTCCTTTGT
ATTGCCTTCGGCCTCTGTGCTGTGTTTCATTTTTCATGGCCTCCCTGCCT
GTGTTGGGTACCTTGATCTCGCTTTTGCTGTGGCCTTTGTTTTTGTACGT
CTGGCTGTCTGCCCATCTGCCGCCTCTTTGTCCTGTTTGCTCCGTTACTC
CCATGCCCTGGTGCGTAGTGCCTGGTGCTGGTACGTACGTTACCCTTTGA
TTTTTTCTTAAGGCGGGTGTGGGAAGCGTCCTCCTTTATGTTTGTTGTTG
TTATATTTTGATCGGTTTTCCGAGGGCTCTTTTCTCGAACGATCGGTGCG
ATACGTGTTCTTTGCTTTCTATCATTTTGTTTTCTTTTCCGAGTGGTTTG
TACTCTACTTTTTTTTTCTTTCTTAATATGACACAACGATTCCATCTCTA
TCATAGAAAAGAGTCAGAGACAGATTAACAATGGAATCATAGCGTCAGAG
AAAACTACCTGTGTGTCTACGATTTCCCAGACAGCATATAGGGACATCTC
CCCTGTGGGTAACAGGCTCAACAGATCAGTTTGGTAGCTGTCTTGTGTGT
CTCATATATGTTATGTTGTGGAATTTCATGTCGTTAAATGTGAGAAGGGC
ACGGGAGAACATTTCTCATCATTGCCTCCTGATGACGTGGTCGCCGATAG
AGGCGTGTGGTTGATGAGGTTTCATAACCGACATGTGGGTGTGTGTTAAA
TGCAGTGGGTGTGTTCACCTCTCTCGCCCATGTGTAGGCAGGAGGTATGG
CTAATTCTCCCATTTGTAGGCAGCGTGGACCATACTTGTAAATATAGACA
GAGTTCATCATTTCATGCATGTTACATCATTTGTGTTTGACAAGGGAGGA
ATGAGAGGTTGTGCGTATGGGTACGGGGGTACTCCCTGTGTCCGTGTTGT
TCCCAGATGTTGCCGCATCAAGTGGCAGCATGTGTCATGGACAGGTAGAC
GTGGAAGGACGGCGACAGGTGAACGGCAGCAGTAGTATGTTGTGCATGGT
GGCATGTTGGGCTTGTGCAGAGGCGCAGTCCATCTTCGACCACACAAAAA
AAGTTTGCTCGTA
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Coding sequence (CDS) from alignment at Scaffold_129:557025..559137+

>EsuBft1629_3a-0001 ID=EsuBft1629_3a-0001|Name=EsuBft1629_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=765bp|location=Sequence derived from alignment at Scaffold_129:557025..559137+ (Ectocarpus subulatus male Bft15b)
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAA
GGTGCTGCTTAAGGCTGAAGTGGTGGAGACTCTCCTGTATGGATACACCT
CGTGGAGCCTAACAGCGGAGCACTACACGAAGCTTAATGGGACCCACCGC
CAGTTCCTCACACGGTGCATCGGCTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCATCGAGGCCACCGTGCGCAAAC
GGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGATGCCGCCTCC
TCAAGCTCATGCTGTTAGGAGCGATGGCGGGGGTCGTGGGATACTGGGGC
GGGCAGGAGGGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTT
CAACATGGGAGACGAAGTGGAAGGTGGTACATGGAAAGAGAGCGCCAAGG
ACCCGGAGGTGTGGTGCAACAAGGTCGAGGACTGGGCGGTATGGCTCGTG
AGGAAATGGCACAGGCAGAAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGC
GAGGGAAGCAGAAGCAGAGAGTACGGCCATCTCAGGACCGAAGAGAAAGA
GAGCCGGGCAAGCGGCGGTGGGGGGGGAAGGAACGGTGACCGGGCAGTGC
TGTAGAACCGAGTAG
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