EsuBft1607_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1607_5a-0001
Unique NameEsuBft1607_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_457contigScaffold_457:12505..15302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHZ2
ProteomeIdEsuBft1607_5
Protein domainsIPR015943
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length279
Hectar predicted targeting categoryother localisation
Evalue2.95e-153
EggNOG OGsKOG0321@1|root,KOG0321@2759|Eukaryota
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-18_001110.3
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K11790
GOsGO:0000075,GO:0000077,GO:0000151,GO:0000209,GO:0000731,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010564,GO:0010948,GO:0015630,GO:0016567,GO:0018130,GO:0019438,GO:0019538,GO:0019941,GO:0019985,GO:0023052,GO:0030163,GO:0031461,GO:0031464,GO:0031465,GO:0031570,GO:0031572,GO:0032446,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0051726,GO:0065007,GO:0070647,GO:0071704,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0072425,GO:0080008,GO:0090304,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1902494,GO:1902749,GO:1902750,GO:1990234
Descriptionsignal transduction involved in G2 DNA damage checkpoint
COG categoryS
BRITEko00000,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_5aEsuBft1607_5aEctocarpus subulatus male Bft15bgeneScaffold_457 12505..15302 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_5a-0001-exonEsuBft1607_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_457 12505..15302 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_5a-0001-exonagat-three_prime_utr-5195Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_457 12505..14105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_5a-0001-cdsEsuBft1607_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_457 14106..15302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_5a-0001EsuBft1607_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_457 14106..15302 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1607_5a-0001 ID=EsuBft1607_5a-0001|Name=EsuBft1607_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2798bp|location=Sequence derived from alignment at Scaffold_457:12505..15302- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAAGTGACAGGGTTGGACTGGTGCCGCGCGGAGCCTCTGAAGCT
GGCCACCAGCTCGGACGACGAGACCGTGCGAGTCTGGACCATCGACCCCG
TTCGCGTCAGACACCGCTCGGCCTCTGCCCCTGTCGTTGCCGGCGCCGGT
GCTTCCGCTCGATCATCAGGAGCGTTGGGCTCTGACCCGGACGCCGCCGC
CGCGGCGGCCGTCGGAGGAGGTTCTTCCGTTGGCGCGGTCAGCGGTGGCG
GCGGGGAGGTGCGCTCGTACCCGTGCCACGGCAAATTTGGAGAGGGCGGC
GCACGCCGCGGCGAAAGCTCGCTGTGGAGACGGAGGGCCCCCGTGGACAA
TCGTGATGGTGATCAGCACGCTCATTGTGGTGATGATCGTGGGCCTCTTG
TTTCCCGGGGTGATGGGTCCGGGGGACAGCAGCAAATCCGGGCCGCCGGC
GTGGACAGCCGGCGTGATGGTGACGGCGGCAGCGGCAGCCGGGGCCAGGG
CCACCAGAGTCACAGCCGCGGTACGGGCGAGAGGATGAATGCGGCGGCTA
GCGGCGGTGGCGGCAACGGGGGCGGCGGCGGATCGACCGCCGTGTTCTCT
CCCTGTTCGCCCAATATGCGACCCGGGGCTTCTTCTGCAAGGCCCGCGGA
GACGGCTGCCCGCGCCAAGGGCGGCGCTGCTGCTGTCGGTGGAGGTGGTA
TCGCCACCGCACCCGCGCATGACGACACCTCGCAACTGTTTCAAGCTTCG
TCGAATAGCGAGACGTCCTCTGGAGCGGACACTATGGACGAGAACATGGG
TATCCGGAGGGTTATTGGCGCGTCTGCGGAGCCCCCACCCCCACCAACCA
CCGGCTCGGACGTGGTGGCTGTTGCGAAAGGGCACCAGCAGGAGACGAGA
GGGTCAAGAAAAGGGGGTCGTCGCGGAATCATGGAGGGACTGCCCAGGGG
GGTGTCCTCGGCCGCGTGGCACGGGAAAGGCTTCCCTGAGCCAGAGCGAG
GGCGTCGGCCGCGGCAACACCCGGACGGGGTGGAGCAGCAGCAGAGGCCG
GAAGCTACTGGTTCTCGGAAGAAGGCGAAAAAGGGGGCCTCCGGACAGCA
GTTGTCTCGGGAGAGTCACACCCTGATGGCGTTTTGGTGCCGGGGACGGG
GGGGTGCGTCGAGCGGTGCGGGGCAGGAAAAGGCGGGCTCGAGCTAAAGG
CTCTTCGCCAAGGAAAAACGAAATGATGGGGGAGTCTTTTGGTGTGGTGC
GATGTGTGCACATTTTTTTTTTCTTTTAAGCCGAAAGTGGGGGGTGGTTT
TCCTACAGCAGTACTGCTCATGCGTTGATGACAGGTAGGTGTGGAGATTT
TCGATGCATGATTTGTCCCAGTGTTTACCGAGAGGTCAGGGCAGGCGCGG
TCGCGTGTGTTTGTGTGTGTTTAGTCCATCATTTCTCGGTGTGTAAGTTT
GACGTGTCAGCCGGGGTTGCATGGGAAGGTCGCACAGGATCGTTTTTCTT
TCGTTGTTTCTTTGCCCAATGTTCCACGCGCAGTTCTTCTTGCCTCATCA
TTTAGTTCTCATCGCGAGAAGTTTGCCAGCTCTGAATCGAGGCCATACCT
GTTGTTTTTTTTTCGCCGTGGAGAAGAAGACACCCTTGTTCCGATTCGCG
TTTCTTTTTTATATAATTGCTCGTGGTGGACCTGCAGCGATAGGTTTCGG
GGCAAAGGTGCTGATTGTCTGAGGTCTAGTTACCTAACCCTAACCCTCAC
CCTCACCCACGGCCAAAGCACGGCCTAGCGGCCACGAGCTGGTCGATAAT
GCGACTGCGCCGGGTGCTCGGAATGCGGAACGGTGAGAGGGCGCTGGAGA
GGGTCAAGGCTAGGAACCAACGCGGGACCAATCTGAGGGCGTGAAACCGC
TTAGGAAGGAAGAGTCACTAACACGTTGCAAAAAAAAATAAATACAGGAT
TGTCTCTTTGTGTCACACCCTCGCCCCTGACGGCGGCAGCCCAGCACACG
CCGGGANCAACGCGGGACCAATCTGAGGGCGTGAAACCGCTTAGGAAGGA
AGAGTCACTAACACGTTGCAAAAAAAAATAAATACAGGATTGTCTCTTTG
TGTCACACCCTCGCCCCTGACGGCGGCAGCCCAGCACACGCCGGGACGGA
CGTTTTTTTGTTTTGTTTTTTCTTGTGGCGTGACTGCGTTTTTTTATGGT
CGTGTGTCGGTGGCGAAGATAGATGTGGCGAACACCTTTGGAGCCGTAAG
CATCTCCCTTCTTTTCGTCGTATGGTTGACGGAGAAGAGAATGTCGAAGT
TCGTGAACGCACGACCTTCCCCTGCCATCTCTTCGTCCCAACGCGGTATG
ACACCTCTCAAGGCGCCACGCCAAGTCTATGTCCTGCACACCTCGTACGT
TGACTTGTCTTTCTGGTGAGATTTTTCGCTAGTCTCTTACGTAGACTAGT
CTACGTTGTTGTCGGTGGTGATTACGTGTTTATTGGCACCCGACTTTTTT
CCTAGATAGAACACGTTGCGTTGTCAAAGTCTGCAGGCCTACACCCGGTC
GCAGTAAGGACAAGTCGTGGAGGATTGTTTCTTGTTTCTTGTTGGTTCAA
GGATCCGTTCGATGTGGTAGCTACGTTATGGCCGTGGGTCGCCTCCGTCA
ATCGCCGCCATGGGCCGCCCTTGTTTTCTGTAGGACACAGGCCGGTTTTT
ATGGATTACCTGCATCTGTATGTTTGTTCGTGGTTTGAATGTTGCCGCTT
TGTACTCGATGTCCTGGCACTGTGTAGACTAGACCTTGTCGCTCATTC
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protein sequence of EsuBft1607_5a-0001

>EsuBft1607_5 ID=EsuBft1607_5|Name=EsuBft1607_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=398bp
MNEVTGLDWCRAEPLKLATSSDDETVRVWTIDPVRVRHRSASAPVVAGAG
ASARSSGALGSDPDAAAAAAVGGGSSVGAVSGGGGEVRSYPCHGKFGEGG
ARRGESSLWRRRAPVDNRDGDQHAHCGDDRGPLVSRGDGSGGQQQIRAAG
VDSRRDGDGGSGSRGQGHQSHSRGTGERMNAAASGGGGNGGGGGSTAVFS
PCSPNMRPGASSARPAETAARAKGGAAAVGGGGIATAPAHDDTSQLFQAS
SNSETSSGADTMDENMGIRRVIGASAEPPPPPTTGSDVVAVAKGHQQETR
GSRKGGRRGIMEGLPRGVSSAAWHGKGFPEPERGRRPRQHPDGVEQQQRP
EATGSRKKAKKGASGQQLSRESHTLMAFWCRGRGGASSGAGQEKAGSS
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mRNA from alignment at Scaffold_457:12505..15302-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1607_5a-0001 ID=EsuBft1607_5a-0001|Name=EsuBft1607_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2798bp|location=Sequence derived from alignment at Scaffold_457:12505..15302- (Ectocarpus subulatus male Bft15b)
ATGAACGAAGTGACAGGGTTGGACTGGTGCCGCGCGGAGCCTCTGAAGCT
GGCCACCAGCTCGGACGACGAGACCGTGCGAGTCTGGACCATCGACCCCG
TTCGCGTCAGACACCGCTCGGCCTCTGCCCCTGTCGTTGCCGGCGCCGGT
GCTTCCGCTCGATCATCAGGAGCGTTGGGCTCTGACCCGGACGCCGCCGC
CGCGGCGGCCGTCGGAGGAGGTTCTTCCGTTGGCGCGGTCAGCGGTGGCG
GCGGGGAGGTGCGCTCGTACCCGTGCCACGGCAAATTTGGAGAGGGCGGC
GCACGCCGCGGCGAAAGCTCGCTGTGGAGACGGAGGGCCCCCGTGGACAA
TCGTGATGGTGATCAGCACGCTCATTGTGGTGATGATCGTGGGCCTCTTG
TTTCCCGGGGTGATGGGTCCGGGGGACAGCAGCAAATCCGGGCCGCCGGC
GTGGACAGCCGGCGTGATGGTGACGGCGGCAGCGGCAGCCGGGGCCAGGG
CCACCAGAGTCACAGCCGCGGTACGGGCGAGAGGATGAATGCGGCGGCTA
GCGGCGGTGGCGGCAACGGGGGCGGCGGCGGATCGACCGCCGTGTTCTCT
CCCTGTTCGCCCAATATGCGACCCGGGGCTTCTTCTGCAAGGCCCGCGGA
GACGGCTGCCCGCGCCAAGGGCGGCGCTGCTGCTGTCGGTGGAGGTGGTA
TCGCCACCGCACCCGCGCATGACGACACCTCGCAACTGTTTCAAGCTTCG
TCGAATAGCGAGACGTCCTCTGGAGCGGACACTATGGACGAGAACATGGG
TATCCGGAGGGTTATTGGCGCGTCTGCGGAGCCCCCACCCCCACCAACCA
CCGGCTCGGACGTGGTGGCTGTTGCGAAAGGGCACCAGCAGGAGACGAGA
GGGTCAAGAAAAGGGGGTCGTCGCGGAATCATGGAGGGACTGCCCAGGGG
GGTGTCCTCGGCCGCGTGGCACGGGAAAGGCTTCCCTGAGCCAGAGCGAG
GGCGTCGGCCGCGGCAACACCCGGACGGGGTGGAGCAGCAGCAGAGGCCG
GAAGCTACTGGTTCTCGGAAGAAGGCGAAAAAGGGGGCCTCCGGACAGCA
GTTGTCTCGGGAGAGTCACACCCTGATGGCGTTTTGGTGCCGGGGACGGG
GGGGTGCGTCGAGCGGTGCGGGGCAGGAAAAGGCGGGCTCGAGCTAAAGG
CTCTTCGCCAAGGAAAAACGAAATGATGGGGGAGTCTTTTGGTGTGGTGC
GATGTGTGCACATTTTTTTTTTCTTTTAAGCCGAAAGTGGGGGGTGGTTT
TCCTACAGCAGTACTGCTCATGCGTTGATGACAGGTAGGTGTGGAGATTT
TCGATGCATGATTTGTCCCAGTGTTTACCGAGAGGTCAGGGCAGGCGCGG
TCGCGTGTGTTTGTGTGTGTTTAGTCCATCATTTCTCGGTGTGTAAGTTT
GACGTGTCAGCCGGGGTTGCATGGGAAGGTCGCACAGGATCGTTTTTCTT
TCGTTGTTTCTTTGCCCAATGTTCCACGCGCAGTTCTTCTTGCCTCATCA
TTTAGTTCTCATCGCGAGAAGTTTGCCAGCTCTGAATCGAGGCCATACCT
GTTGTTTTTTTTTCGCCGTGGAGAAGAAGACACCCTTGTTCCGATTCGCG
TTTCTTTTTTATATAATTGCTCGTGGTGGACCTGCAGCGATAGGTTTCGG
GGCAAAGGTGCTGATTGTCTGAGGTCTAGTTACCTAACCCTAACCCTCAC
CCTCACCCACGGCCAAAGCACGGCCTAGCGGCCACGAGCTGGTCGATAAT
GCGACTGCGCCGGGTGCTCGGAATGCGGAACGGTGAGAGGGCGCTGGAGA
GGGTCAAGGCTAGGAACCAACGCGGGACCAATCTGAGGGCGTGAAACCGC
TTAGGAAGGAAGAGTCACTAACACGTTGCAAAAAAAAATAAATACAGGAT
TGTCTCTTTGTGTCACACCCTCGCCCCTGACGGCGGCAGCCCAGCACACG
CCGGGANCAACGCGGGACCAATCTGAGGGCGTGAAACCGCTTAGGAAGGA
AGAGTCACTAACACGTTGCAAAAAAAAATAAATACAGGATTGTCTCTTTG
TGTCACACCCTCGCCCCTGACGGCGGCAGCCCAGCACACGCCGGGACGGA
CGTTTTTTTGTTTTGTTTTTTCTTGTGGCGTGACTGCGTTTTTTTATGGT
CGTGTGTCGGTGGCGAAGATAGATGTGGCGAACACCTTTGGAGCCGTAAG
CATCTCCCTTCTTTTCGTCGTATGGTTGACGGAGAAGAGAATGTCGAAGT
TCGTGAACGCACGACCTTCCCCTGCCATCTCTTCGTCCCAACGCGGTATG
ACACCTCTCAAGGCGCCACGCCAAGTCTATGTCCTGCACACCTCGTACGT
TGACTTGTCTTTCTGGTGAGATTTTTCGCTAGTCTCTTACGTAGACTAGT
CTACGTTGTTGTCGGTGGTGATTACGTGTTTATTGGCACCCGACTTTTTT
CCTAGATAGAACACGTTGCGTTGTCAAAGTCTGCAGGCCTACACCCGGTC
GCAGTAAGGACAAGTCGTGGAGGATTGTTTCTTGTTTCTTGTTGGTTCAA
GGATCCGTTCGATGTGGTAGCTACGTTATGGCCGTGGGTCGCCTCCGTCA
ATCGCCGCCATGGGCCGCCCTTGTTTTCTGTAGGACACAGGCCGGTTTTT
ATGGATTACCTGCATCTGTATGTTTGTTCGTGGTTTGAATGTTGCCGCTT
TGTACTCGATGTCCTGGCACTGTGTAGACTAGACCTTGTCGCTCATTC
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Coding sequence (CDS) from alignment at Scaffold_457:12505..15302-

>EsuBft1607_5a-0001 ID=EsuBft1607_5a-0001|Name=EsuBft1607_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1197bp|location=Sequence derived from alignment at Scaffold_457:12505..15302- (Ectocarpus subulatus male Bft15b)
ATGAACGAAGTGACAGGGTTGGACTGGTGCCGCGCGGAGCCTCTGAAGCT
GGCCACCAGCTCGGACGACGAGACCGTGCGAGTCTGGACCATCGACCCCG
TTCGCGTCAGACACCGCTCGGCCTCTGCCCCTGTCGTTGCCGGCGCCGGT
GCTTCCGCTCGATCATCAGGAGCGTTGGGCTCTGACCCGGACGCCGCCGC
CGCGGCGGCCGTCGGAGGAGGTTCTTCCGTTGGCGCGGTCAGCGGTGGCG
GCGGGGAGGTGCGCTCGTACCCGTGCCACGGCAAATTTGGAGAGGGCGGC
GCACGCCGCGGCGAAAGCTCGCTGTGGAGACGGAGGGCCCCCGTGGACAA
TCGTGATGGTGATCAGCACGCTCATTGTGGTGATGATCGTGGGCCTCTTG
TTTCCCGGGGTGATGGGTCCGGGGGACAGCAGCAAATCCGGGCCGCCGGC
GTGGACAGCCGGCGTGATGGTGACGGCGGCAGCGGCAGCCGGGGCCAGGG
CCACCAGAGTCACAGCCGCGGTACGGGCGAGAGGATGAATGCGGCGGCTA
GCGGCGGTGGCGGCAACGGGGGCGGCGGCGGATCGACCGCCGTGTTCTCT
CCCTGTTCGCCCAATATGCGACCCGGGGCTTCTTCTGCAAGGCCCGCGGA
GACGGCTGCCCGCGCCAAGGGCGGCGCTGCTGCTGTCGGTGGAGGTGGTA
TCGCCACCGCACCCGCGCATGACGACACCTCGCAACTGTTTCAAGCTTCG
TCGAATAGCGAGACGTCCTCTGGAGCGGACACTATGGACGAGAACATGGG
TATCCGGAGGGTTATTGGCGCGTCTGCGGAGCCCCCACCCCCACCAACCA
CCGGCTCGGACGTGGTGGCTGTTGCGAAAGGGCACCAGCAGGAGACGAGA
GGGTCAAGAAAAGGGGGTCGTCGCGGAATCATGGAGGGACTGCCCAGGGG
GGTGTCCTCGGCCGCGTGGCACGGGAAAGGCTTCCCTGAGCCAGAGCGAG
GGCGTCGGCCGCGGCAACACCCGGACGGGGTGGAGCAGCAGCAGAGGCCG
GAAGCTACTGGTTCTCGGAAGAAGGCGAAAAAGGGGGCCTCCGGACAGCA
GTTGTCTCGGGAGAGTCACACCCTGATGGCGTTTTGGTGCCGGGGACGGG
GGGGTGCGTCGAGCGGTGCGGGGCAGGAAAAGGCGGGCTCGAGCTAA
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