EsuBft1607_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1607_2a-0001
Unique NameEsuBft1607_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_457contigScaffold_457:40763..41425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1607_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length66
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_2aEsuBft1607_2aEctocarpus subulatus male Bft15bgeneScaffold_457 40763..41425 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_2a-0001-exonEsuBft1607_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_457 40763..41425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_2a-0001-cdsEsuBft1607_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_457 40763..41425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1607_2a-0001EsuBft1607_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_457 40763..41425 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1607_2a-0001 ID=EsuBft1607_2a-0001|Name=EsuBft1607_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=663bp|location=Sequence derived from alignment at Scaffold_457:40763..41425- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGAGTACGCGATGCGCCCGAAGAGGGGGGCGCATCTACTGGGGG
AGGCGACGACGACGACGTCGTTGAGGGATGGGCAACCGGTTCGGACCCGC
TGTTCTGGCCAGCAGTTCGAAGCACGGCGGACGGCAAGGAGGACGTCAAG
CACGTGCTAGTTCACGGCGAACTTCGGGCCGAGGGGGGGGAACGTGGCTG
CACGCGTGTACCGGTGGACAAGAGCGACTTGGTGATGCGCGATGGCAAGG
GGGACTACAGCTTGGTGCCCGATCTTCAAGTGCGCGACTTGTACGTGGCG
AAGAAGAAGAAGGAGGAAGCGCTTTTCTGGCCAGCCCGGCGGATCGTGGA
TGGAGAGACGGAGTACAAACACGTGCACGTCCACGACGGCGAGCGTCCCT
GCGGGGACTGCGTGCGGATAAAACCGAACGCTCTCAACGTCTCACTGCGG
TGCGAGTGCCGCGACTGCAAACGCAAGCCGTTTGACAGCTCTTCGCGGGT
CCCTTTCAACCCGCGTGACCTGCTGGGGCAGGACGGGCGAGGGGATTTCT
GCTTGGTGCCCGACCACGAGGTCTTCGCCCTCTACTTTCACGACGAGACC
ACGGCGAAGGAGAACGACGACGGCAGCAACCAGTGGGTGTCGGTGTTGAA
GGGCGCCGCNNNN
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protein sequence of EsuBft1607_2a-0001

>EsuBft1607_2 ID=EsuBft1607_2|Name=EsuBft1607_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MARVRDAPEEGGASTGGGDDDDVVEGWATGSDPLFWPAVRSTADGKEDVK
HVLVHGELRAEGGERGCTRVPVDKSDLVMRDGKGDYSLVPDLQVRDLYVA
KKKKEEALFWPARRIVDGETEYKHVHVHDGERPCGDCVRIKPNALNVSLR
CECRDCKRKPFDSSSRVPFNPRDLLGQDGRGDFCLVPDHEVFALYFHDET
TAKENDDGSNQWVSVLKGAAX
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mRNA from alignment at Scaffold_457:40763..41425-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1607_2a-0001 ID=EsuBft1607_2a-0001|Name=EsuBft1607_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=663bp|location=Sequence derived from alignment at Scaffold_457:40763..41425- (Ectocarpus subulatus male Bft15b)
ATGGCGAGAGTACGCGATGCGCCCGAAGAGGGGGGCGCATCTACTGGGGG
AGGCGACGACGACGACGTCGTTGAGGGATGGGCAACCGGTTCGGACCCGC
TGTTCTGGCCAGCAGTTCGAAGCACGGCGGACGGCAAGGAGGACGTCAAG
CACGTGCTAGTTCACGGCGAACTTCGGGCCGAGGGGGGGGAACGTGGCTG
CACGCGTGTACCGGTGGACAAGAGCGACTTGGTGATGCGCGATGGCAAGG
GGGACTACAGCTTGGTGCCCGATCTTCAAGTGCGCGACTTGTACGTGGCG
AAGAAGAAGAAGGAGGAAGCGCTTTTCTGGCCAGCCCGGCGGATCGTGGA
TGGAGAGACGGAGTACAAACACGTGCACGTCCACGACGGCGAGCGTCCCT
GCGGGGACTGCGTGCGGATAAAACCGAACGCTCTCAACGTCTCACTGCGG
TGCGAGTGCCGCGACTGCAAACGCAAGCCGTTTGACAGCTCTTCGCGGGT
CCCTTTCAACCCGCGTGACCTGCTGGGGCAGGACGGGCGAGGGGATTTCT
GCTTGGTGCCCGACCACGAGGTCTTCGCCCTCTACTTTCACGACGAGACC
ACGGCGAAGGAGAACGACGACGGCAGCAACCAGTGGGTGTCGGTGTTGAA
GGGCGCCGCNNNN
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Coding sequence (CDS) from alignment at Scaffold_457:40763..41425-

>EsuBft1607_2a-0001 ID=EsuBft1607_2a-0001|Name=EsuBft1607_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_457:40763..41425- (Ectocarpus subulatus male Bft15b)
ATGGCGAGAGTACGCGATGCGCCCGAAGAGGGGGGCGCATCTACTGGGGG
AGGCGACGACGACGACGTCGTTGAGGGATGGGCAACCGGTTCGGACCCGC
TGTTCTGGCCAGCAGTTCGAAGCACGGCGGACGGCAAGGAGGACGTCAAG
CACGTGCTAGTTCACGGCGAACTTCGGGCCGAGGGGGGGGAACGTGGCTG
CACGCGTGTACCGGTGGACAAGAGCGACTTGGTGATGCGCGATGGCAAGG
GGGACTACAGCTTGGTGCCCGATCTTCAAGTGCGCGACTTGTACGTGGCG
AAGAAGAAGAAGGAGGAAGCGCTTTTCTGGCCAGCCCGGCGGATCGTGGA
TGGAGAGACGGAGTACAAACACGTGCACGTCCACGACGGCGAGCGTCCCT
GCGGGGACTGCGTGCGGATAAAACCGAACGCTCTCAACGTCTCACTGCGG
TGCGAGTGCCGCGACTGCAAACGCAAGCCGTTTGACAGCTCTTCGCGGGT
CCCTTTCAACCCGCGTGACCTGCTGGGGCAGGACGGGCGAGGGGATTTCT
GCTTGGTGCCCGACCACGAGGTCTTCGCCCTCTACTTTCACGACGAGACC
ACGGCGAAGGAGAACGACGACGGCAGCAACCAGTGGGTGTCGGTGTTGAA
GGGCGCCGCNNNN
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