Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 157072.XP_008874808.1 |
| ProteomeId | EsuBft1604_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 98 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.92e-22 |
| EggNOG OGs | 2CMKC@1|root,2QQNW@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1604_3a-0001 ID=EsuBft1604_3a-0001|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=987bp|location=Sequence derived from alignment at Scaffold_360:314968..316216+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTTGTACGTCTGTCTGTCTGCCCATCTG
CCGCCTCTTTGCCCTGTTTGCTCCGTTATTCCCATGCCCTGGTGCGCAGT
GTCTGGTGCTGGTACGTTACCCTTTGATTATGGATTTTTTCTTTCGGCGG
GTGTGGGAAGCGTCCTCCTTTATCTTTCTGTTATTTTTGTTTTGTTTTAT
TTTGATCGGTGTCCGAGGGCTCTTTTCTCGACCGGTCGGTGCGATACCTG
TTCTTTTCTTTCTATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCT
GTTTTTGTTTCTTTTGNGAGGAGGTGATTCGGTACCTCCTCGCTGGCAGC
AAGAACAGGGTTTTGAGGTATGGTGCGTTCAAGGAAGCCGGCGAGACGTT
CGGCTGCCACTGGGAGACGATCAAGAGGCTGTGAATGAGCCCTGACACCA
ACATCCTGGACCTGGGCTTCTTCGCGTCAATCCAGTCCCTGCAGGACCGC
TACAAGCCCAGGACTATCGACGACCTCGTCGGCGAGGTCGAGACCGCGTG
GGAGAAGGCGTCGCCGGACAAGCTGGGCAAGGTGTGGACTTCGCTCCAGG
CTTGCTTGGAGCAAACCTTGCTCTGCGGCGGGGACAACACCTACAAGGTC
TCTCACTTGAGCAAGGACAAGGCTGCACGGGCGGGGACGCCCATCCCACT
GCGGTACCAGATCTCCGAGGAGGCGTGGATCAAGGACACATCGTCGCTCG
CGGCGGGAGAGGGACAAGGAGGAGCCGGGTAGAAGGG back to topprotein sequence of EsuBft1604_3a-0001 >EsuBft1604_3 ID=EsuBft1604_3|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MSPDTNILDLGFFASIQSLQDRYKPRTIDDLVGEVETAWEKASPDKLGKV
WTSLQACLEQTLLCGGDNTYKVSHLSKDKAARAGTPIPLRYQISEEAWIK
DTSSLAAGEGQGGAG back to topmRNA from alignment at Scaffold_360:314968..316216+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1604_3a-0001 ID=EsuBft1604_3a-0001|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1249bp|location=Sequence derived from alignment at Scaffold_360:314968..316216+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTTGTACGTCTGTCTGTCTGCCCATCTG
CCGCCTCTTTGCCCTGTTTGCTCCGTTATTCCCATGCCCTGGTGCGCAGT
GTCTGGTGCTGGTACGTTACCCTTTGATTATGGATTTTTTCTTTCGGCGG
GTGTGGGAAGCGTCCTCCTTTATCTTTCTGTTATTTTTGTTTTGTTTTAT
TTTGATCGGTGTCCGAGGGCTCTTTTCTCGACCGGTCGGTGCGATACCTG
TTCTTTTCTTTCTATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCT
GTTTTTGTTTCTTTTGNGAGGAGGTGATTCGGTACCTCCTCGCTGGCAGC
AAGAACAGGGTTTTGAGGTATGGTGCGTTCAAGGAAGCCGGCGAGACGTT
CGGCTGCCACTGGGAGACGATCAAGAGGCTGTGAATGAGGTACGATACGC
AGCACAAAGCGGGGGTCGCCAGTCCACAGATAGAGAACCGGCGCAAGGGA
AATAGCGGCCGGAGGGGCATTCCCCTCGAAGAACTGAAGGAGCGCCTGCG
TGACATCCCGCTGAACGACCGCACCACACAGCGCCGCTTGGCTGCGGCGC
TTGGGATTCCCAAAAGCACGCTGCACAGGAATCTCAAGGCGCTCGGGCTG
AGGGCGCACTCGAACGCGCTCAAGCCGTACCTGCAACCAGCTTCGCAACA
GCCCTGACACCAACATCCTGGACCTGGGCTTCTTCGCGTCAATCCAGTCC
CTGCAGGACCGCTACAAGCCCAGGACTATCGACGACCTCGTCGGCGAGGT
CGAGACCGCGTGGGAGAAGGCGTCGCCGGACAAGCTGGGCAAGGTGTGGA
CTTCGCTCCAGGCTTGCTTGGAGCAAACCTTGCTCTGCGGCGGGGACAAC
ACCTACAAGGTCTCTCACTTGAGCAAGGACAAGGCTGCACGGGCGGGGAC
GCCCATCCCACTGCGGTACCAGATCTCCGAGGAGGCGTGGATCAAGGACA
CATCGTCGCTCGCGGCGGGAGAGGGACAAGGAGGAGCCGGGTAGAAGGG back to topCoding sequence (CDS) from alignment at Scaffold_360:314968..316216+ >EsuBft1604_3a-0001 ID=EsuBft1604_3a-0001|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_360:314968..316216+ (Ectocarpus subulatus male Bft15b)
ATGAGCCCTGACACCAACATCCTGGACCTGGGCTTCTTCGCGTCAATCCA
GTCCCTGCAGGACCGCTACAAGCCCAGGACTATCGACGACCTCGTCGGCG
AGGTCGAGACCGCGTGGGAGAAGGCGTCGCCGGACAAGCTGGGCAAGGTG
TGGACTTCGCTCCAGGCTTGCTTGGAGCAAACCTTGCTCTGCGGCGGGGA
CAACACCTACAAGGTCTCTCACTTGAGCAAGGACAAGGCTGCACGGGCGG
GGACGCCCATCCCACTGCGGTACCAGATCTCCGAGGAGGCGTGGATCAAG
GACACATCGTCGCTCGCGGCGGGAGAGGGACAAGGAGGAGCCGGGTAG back to top
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