EsuBft1604_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1604_3a-0001
Unique NameEsuBft1604_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:314968..316216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog157072.XP_008874808.1
ProteomeIdEsuBft1604_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length98
Hectar predicted targeting categoryother localisation
Evalue6.92e-22
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1604_3aEsuBft1604_3aEctocarpus subulatus male Bft15bgeneScaffold_360 314968..316216 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1604_3a-0001-exonagat-exon-10623Ectocarpus subulatus male Bft15bexonScaffold_360 314968..315606 +
EsuBft1604_3a-0001-exonEsuBft1604_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 315869..316216 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1604_3a-0001-exonagat-five_prime_utr-3381Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 314968..315601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1604_3a-0001-cdsEsuBft1604_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 315602..315606 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1604_3a-0001-exonagat-three_prime_utr-5184Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 316212..316216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1604_3a-0001EsuBft1604_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 315602..316211 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1604_3a-0001 ID=EsuBft1604_3a-0001|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=987bp|location=Sequence derived from alignment at Scaffold_360:314968..316216+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTTGTACGTCTGTCTGTCTGCCCATCTG
CCGCCTCTTTGCCCTGTTTGCTCCGTTATTCCCATGCCCTGGTGCGCAGT
GTCTGGTGCTGGTACGTTACCCTTTGATTATGGATTTTTTCTTTCGGCGG
GTGTGGGAAGCGTCCTCCTTTATCTTTCTGTTATTTTTGTTTTGTTTTAT
TTTGATCGGTGTCCGAGGGCTCTTTTCTCGACCGGTCGGTGCGATACCTG
TTCTTTTCTTTCTATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCT
GTTTTTGTTTCTTTTGNGAGGAGGTGATTCGGTACCTCCTCGCTGGCAGC
AAGAACAGGGTTTTGAGGTATGGTGCGTTCAAGGAAGCCGGCGAGACGTT
CGGCTGCCACTGGGAGACGATCAAGAGGCTGTGAATGAGCCCTGACACCA
ACATCCTGGACCTGGGCTTCTTCGCGTCAATCCAGTCCCTGCAGGACCGC
TACAAGCCCAGGACTATCGACGACCTCGTCGGCGAGGTCGAGACCGCGTG
GGAGAAGGCGTCGCCGGACAAGCTGGGCAAGGTGTGGACTTCGCTCCAGG
CTTGCTTGGAGCAAACCTTGCTCTGCGGCGGGGACAACACCTACAAGGTC
TCTCACTTGAGCAAGGACAAGGCTGCACGGGCGGGGACGCCCATCCCACT
GCGGTACCAGATCTCCGAGGAGGCGTGGATCAAGGACACATCGTCGCTCG
CGGCGGGAGAGGGACAAGGAGGAGCCGGGTAGAAGGG
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protein sequence of EsuBft1604_3a-0001

>EsuBft1604_3 ID=EsuBft1604_3|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=115bp
MSPDTNILDLGFFASIQSLQDRYKPRTIDDLVGEVETAWEKASPDKLGKV
WTSLQACLEQTLLCGGDNTYKVSHLSKDKAARAGTPIPLRYQISEEAWIK
DTSSLAAGEGQGGAG
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mRNA from alignment at Scaffold_360:314968..316216+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1604_3a-0001 ID=EsuBft1604_3a-0001|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1249bp|location=Sequence derived from alignment at Scaffold_360:314968..316216+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTTGTACGTCTGTCTGTCTGCCCATCTG
CCGCCTCTTTGCCCTGTTTGCTCCGTTATTCCCATGCCCTGGTGCGCAGT
GTCTGGTGCTGGTACGTTACCCTTTGATTATGGATTTTTTCTTTCGGCGG
GTGTGGGAAGCGTCCTCCTTTATCTTTCTGTTATTTTTGTTTTGTTTTAT
TTTGATCGGTGTCCGAGGGCTCTTTTCTCGACCGGTCGGTGCGATACCTG
TTCTTTTCTTTCTATCATTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCT
GTTTTTGTTTCTTTTGNGAGGAGGTGATTCGGTACCTCCTCGCTGGCAGC
AAGAACAGGGTTTTGAGGTATGGTGCGTTCAAGGAAGCCGGCGAGACGTT
CGGCTGCCACTGGGAGACGATCAAGAGGCTGTGAATGAGGTACGATACGC
AGCACAAAGCGGGGGTCGCCAGTCCACAGATAGAGAACCGGCGCAAGGGA
AATAGCGGCCGGAGGGGCATTCCCCTCGAAGAACTGAAGGAGCGCCTGCG
TGACATCCCGCTGAACGACCGCACCACACAGCGCCGCTTGGCTGCGGCGC
TTGGGATTCCCAAAAGCACGCTGCACAGGAATCTCAAGGCGCTCGGGCTG
AGGGCGCACTCGAACGCGCTCAAGCCGTACCTGCAACCAGCTTCGCAACA
GCCCTGACACCAACATCCTGGACCTGGGCTTCTTCGCGTCAATCCAGTCC
CTGCAGGACCGCTACAAGCCCAGGACTATCGACGACCTCGTCGGCGAGGT
CGAGACCGCGTGGGAGAAGGCGTCGCCGGACAAGCTGGGCAAGGTGTGGA
CTTCGCTCCAGGCTTGCTTGGAGCAAACCTTGCTCTGCGGCGGGGACAAC
ACCTACAAGGTCTCTCACTTGAGCAAGGACAAGGCTGCACGGGCGGGGAC
GCCCATCCCACTGCGGTACCAGATCTCCGAGGAGGCGTGGATCAAGGACA
CATCGTCGCTCGCGGCGGGAGAGGGACAAGGAGGAGCCGGGTAGAAGGG
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Coding sequence (CDS) from alignment at Scaffold_360:314968..316216+

>EsuBft1604_3a-0001 ID=EsuBft1604_3a-0001|Name=EsuBft1604_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=348bp|location=Sequence derived from alignment at Scaffold_360:314968..316216+ (Ectocarpus subulatus male Bft15b)
ATGAGCCCTGACACCAACATCCTGGACCTGGGCTTCTTCGCGTCAATCCA
GTCCCTGCAGGACCGCTACAAGCCCAGGACTATCGACGACCTCGTCGGCG
AGGTCGAGACCGCGTGGGAGAAGGCGTCGCCGGACAAGCTGGGCAAGGTG
TGGACTTCGCTCCAGGCTTGCTTGGAGCAAACCTTGCTCTGCGGCGGGGA
CAACACCTACAAGGTCTCTCACTTGAGCAAGGACAAGGCTGCACGGGCGG
GGACGCCCATCCCACTGCGGTACCAGATCTCCGAGGAGGCGTGGATCAAG
GACACATCGTCGCTCGCGGCGGGAGAGGGACAAGGAGGAGCCGGGTAG
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