EsuBft1580_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1580_9a-0001
Unique NameEsuBft1580_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:53599..55762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LSZ3
ProteomeIdEsuBft1580_9
Protein domainsPTHR21207
Protein domainsIPR019399
Ownerapollo_admin@sb-roscoff.fr
Noteparkin coregulated gene protein homolog os:mus musculus gn:pacrg pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length432
Hectar predicted targeting categoryother localisation
Evalue4.46e-65
EggNOG OGsKOG3961@1|root,KOG3961@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnegative regulation of cell death
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
GO0097225
GO0005739
GO0044297
GO0007286
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_9aEsuBft1580_9aEctocarpus subulatus male Bft15bgeneScaffold_390 53599..55762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_9a-0001EsuBft1580_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 53704..55750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_9a-0001-exonagat-exon-83631Ectocarpus subulatus male Bft15bexonScaffold_390 53599..53725 -
EsuBft1580_9a-0001-exonagat-exon-83633Ectocarpus subulatus male Bft15bexonScaffold_390 54208..54266 -
EsuBft1580_9a-0001-exonEsuBft1580_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 54451..54564 -
EsuBft1580_9a-0001-exonagat-exon-83632Ectocarpus subulatus male Bft15bexonScaffold_390 55631..55762 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_9a-0001-exonagat-three_prime_utr-5068Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 53599..53703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_9a-0001-cdsEsuBft1580_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 53704..53725 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_9a-0001-exonagat-five_prime_utr-3284Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 55751..55762 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1580_9a-0001 ID=EsuBft1580_9a-0001|Name=EsuBft1580_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=432bp|location=Sequence derived from alignment at Scaffold_390:53599..55762- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCATTCTGCCCATGAAGACCGCCCTCAACACGAGGGAGCCCCGCATCAT
CTGCCCGACTCTCAAGATCCTCCAGCAGATGATTCTGTTGAGCCCCATGA
TCGGCCAGGCGCTGGTGCCGTACTACCGACAGCTCCTTCCGATGTTCAAC
CTGTTCCGTGGGATGAACAGCAACATAGGAGACGCCATCGATTACAACCA
GCGTTCCAGGATCAACGTTGGGGAACTCATCATGGAGACCCTCGAGGTGA
TGGAGCAGTTTGGAGGACCCGACGCCTTCATCAACATCAAGTACATGATT
CCAACGTATGAGAGCTGCGGGCCCTGACGCTTTTGTGCTGCCCTGACACG
GGCCGGAGGATTCACTTGCGTTCTCGAGAAACGGACGGCGGGACGAGGAG
ATTTGACCGGCCGGGAGGGAGAGAATAGAAAG
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protein sequence of EsuBft1580_9a-0001

>EsuBft1580_9 ID=EsuBft1580_9|Name=EsuBft1580_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=104bp
MKTALNTREPRIICPTLKILQQMILLSPMIGQALVPYYRQLLPMFNLFRG
MNSNIGDAIDYNQRSRINVGELIMETLEVMEQFGGPDAFINIKYMIPTYE
SCGP
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mRNA from alignment at Scaffold_390:53599..55762-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1580_9a-0001 ID=EsuBft1580_9a-0001|Name=EsuBft1580_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2164bp|location=Sequence derived from alignment at Scaffold_390:53599..55762- (Ectocarpus subulatus male Bft15b)
CTCATTCTGCCCATGAAGACCGCCCTCAACACGAGGGAGCCCCGCATCAT
CTGCCCGACTCTCAAGATCCTCCAGCAGATGATTCTGTTGAGCCCCATGA
TCGGCCAGGCGCTGGTGCCGTACTACCGACAGGTACGTGCCTCCCGATCC
GTTTTCGCGCGTGCGTTTTTTGTTGTTTGCTCCTTACCATGGTTCTCAGG
TACAAGCAGTTATTTTCCGCTGCCTTGGGATTGGTAGCATGCTTGCCTTG
CCGTTTATGCCGCGTATTATCCCTGATTGATGAATTTGACTGTTGGATAT
TTTTGTGGACGTGTCTGGGAAAAGATAGGTGCATCTCGTAACCCCCTGGT
CGGCTTGTTTGCCTAGTCTCCACCATGTCGGCGTTGCCTCGTACACACTC
CACCGCGACCTTCTCTCGTGTTTCTCAGCTTGCAACCGGCGTGAGCGCGT
GTGTAACTGTACAGGGTAGAGGGGGGGGTTGTGCTCAATGTCGTCCATGC
CGTAGTCGTTAGACCATTGACCTCGCATCCCTCCAAAGCCGGGGCGGAGC
ACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGC
CGTGAGGTACTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTGCTAAGG
GTGTTCGGCATCTTGTGCTTACGTACTTCCTTGCGTGCGGATGAGAGTGG
GGGGGTGAGGTACTGGGTGAGGCGGGCTGGACAGCTGCTGTAGTATGGGG
TTCACTAGGAAAGACAAAAGACCATGGAAAGCGATGAAGACCTGGCGAGA
GGCGTGGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGAGGTAAGCGCGTG
AACGAGGGGGCAAAACGGGGTTTGTTTCGGGCCCGGAAATGAGTGAAGTC
AGCAACAATGGCAAGAAGAATGAGGAAATACGATTTCGAAACTCTTCTAG
CCCAAACCGCCCCGCTATTCCTCCGAAGCGTCTTCCTGGGGATAGTCGGC
GAACAACTGACAAACTTTTCACGAACTGAATCATGTACCGAGCGTACCAC
CAACCTTTGCCGGTTTTTCTTTCGTTTCCGTTTTTGTCTGCGTTGTAGCT
CCTTCCGATGTTCAACCTGTTCCGTGGGATGAACAGCAACATAGGAGACG
CCATCGATTACAACCAGCGTTCCAGGATCAACGTTGGGGAACTCATCATG
GAGACCCTCGAGGTGATGGTTAACACGACAAGGTGACATTGTTGCTTCGA
GCACCTTCACCACTATCTGCACCACTGCACTGTGCTGTATCGTATCGCAC
TCTTACCCAAAATGTGAGGTGTGGAGCAAAAAAATGTGTGATATACCCCG
CGTAAGTCGTCCTCTTTTTCTTCTGTGTTGATGGGCCTGCCCGCAGGTGA
TGGAGCAGTTTGGAGGACCCGACGCCTTCATCAACATCAAGTACATGATT
CCAACGTGAGTGCGGTGTTTTGCACAAGGAGGAGGAAAGTTGAACCCCAC
AAGCAGCACCAAGCTGTTTCTTGCTTGTACTGGGTCAGAATCCCCCACCC
GTGCGCACGCACACTGCACTTTATTTGCCAACAATCCCTTCTGCTGCTGT
CGCTCGCAGTTAGTTTCAGATTCCACCTACCCTACGCTCTCCCCGCCGTT
CTTAACTGAAGTAGTAGTAGTGCTTCTTCGATCCGAGGTTCAAACGTTTT
CATTTCTCTCCGAACCCGCTTCGTCCTGCAGCACCCTAGATGGACTTCCC
TCCTCCACACCGTAAATTTTAGCGAGAAAAACTCCAATCGATCCACCAAA
CATGTGCTGCAACCACGGGTTGTACATTTACACTCCGTTGCCATTTTTTC
CCTCCTCGTCGGACAGTCCCAAGAGAAACCTAGAAAAGTCGACTCTGACC
GTCGGACCGTGCTCTCCGCCCTGTGTCCAATGTGTAGGTATGAGAGCTGC
GGGCCCTGACGCTTTTGTGCTGCCCTGACACGGGCCGGAGGATTCACTTG
CGTTCTCGAGAAACGGACGGCGGGACGAGGAGATTTGACCGGCCGGGAGG
GAGAGAATAGAAAG
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Coding sequence (CDS) from alignment at Scaffold_390:53599..55762-

>EsuBft1580_9a-0001 ID=EsuBft1580_9a-0001|Name=EsuBft1580_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=315bp|location=Sequence derived from alignment at Scaffold_390:53599..55762- (Ectocarpus subulatus male Bft15b)
ATGAAGACCGCCCTCAACACGAGGGAGCCCCGCATCATCTGCCCGACTCT
CAAGATCCTCCAGCAGATGATTCTGTTGAGCCCCATGATCGGCCAGGCGC
TGGTGCCGTACTACCGACAGCTCCTTCCGATGTTCAACCTGTTCCGTGGG
ATGAACAGCAACATAGGAGACGCCATCGATTACAACCAGCGTTCCAGGAT
CAACGTTGGGGAACTCATCATGGAGACCCTCGAGGTGATGGAGCAGTTTG
GAGGACCCGACGCCTTCATCAACATCAAGTACATGATTCCAACGTATGAG
AGCTGCGGGCCCTGA
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