EsuBft1580_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1580_3a-0001
Unique NameEsuBft1580_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:9698..13344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005103806.1
ProteomeIdEsuBft1580_3
Protein domainsPTHR19303
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length274
Hectar predicted targeting categoryother localisation
Evalue4.17e-37
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38DQS@33154|Opisthokonta,3BK20@33208|Metazoa,3CYN0@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionJerky protein homolog-like
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_3aEsuBft1580_3aEctocarpus subulatus male Bft15bgeneScaffold_390 9698..13344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_3a-0001EsuBft1580_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 11243..12842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_3a-0001-exonagat-exon-83609Ectocarpus subulatus male Bft15bexonScaffold_390 9698..11814 -
EsuBft1580_3a-0001-exonagat-exon-83608Ectocarpus subulatus male Bft15bexonScaffold_390 12503..12908 -
EsuBft1580_3a-0001-exonEsuBft1580_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 13123..13344 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_3a-0001-exonagat-three_prime_utr-5061Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 9698..11242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_3a-0001-cdsEsuBft1580_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 11243..11814 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_3a-0001-exonagat-five_prime_utr-3276Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 12843..12908 -
EsuBft1580_3a-0001-exonagat-five_prime_utr-3277Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 13123..13344 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1580_3a-0001 ID=EsuBft1580_3a-0001|Name=EsuBft1580_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2745bp|location=Sequence derived from alignment at Scaffold_390:9698..13344- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTTGCGTTTGAGCACTTCAGCGTCGCGATCGGGTCTCGCAGCCACGAGAT
ACAGCAACCCGGCCACCAGCGCTCTTGATGTGGGGCATCTTAGCCCTTGT
CGGGCTCCTGTTGCTAAGCATGGGTCGGCAGAGAGTGGACCCCGTAGCCG
CTGAAAAGGCGTGTGAAGCGGTACGCAGCGGTCGCATGTCACAGAACGCC
GCTGCAGCTGCCTTTGGGTTGGAAGCTCCCTCCAGCGGCGTCTGGATGGT
AATTGCGCCATGGCGCGAGGGTTGGCCCCGGGACTGTCATGACCAAAGCA
GAGGAGGACGTGGTGGAAGATCTCCTGTTGTACGCTGGTAGAAACTTCAT
TCCTCTCACCACCGCAGACTTGACGGAACGCGTGAGACGGCTCTGCAACG
ACGGTCGGCCGATCCCGTGGAACAGTGACAAGGGCCCGGGGAAGGACTGG
CTCAAGGGCTTCCTCGGAAGGCACGAGGGCATCAGCCATCGACTCGCCCG
CATCTACGAGTCTAACCGGGTGACCTCGTCAGAGGATGAGCGTCTGCACA
AGTTCTACGATTTTTGGGCGGAGTTTCTCGGCGAGCACAGGCCTGCGGCC
GACCACATTTGGAACACGGACGAGTCAGGTGGCACCATCCAAGGTGCCCA
GGGACAGCAGGTATATGCGGAACGGGGGCAGCCGGTGGTCCCGCAGATGC
GTTCCACTTCGCGAGAGAACTGCACGATCGTCACCACCATCAACGCCGCC
GGCGCCGTGTTGGCCCCTACCATCATCTTCAAAGGGCAGCGTTTCAACGG
AGATTGGATCGTGGATCAGGACGGCCCGCCGGGTGCGACGTACACCTGCA
CGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCATGGAC
TTCCACGAGCAGCTGCGCAAGCGCAACTTGCTCGATGGAAAACCCCATGT
GCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCCTGGAAGTCGTGGAGT
TAGCCAGGTCCCTCAGCATCCACCTCGTCCAGCTGCCCTCCCACATGTCC
CACATCACCCAGCCCCTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAGGA
GCTGACCAAGGCGATCCAGGCCTTCCCGGCGACACACGGAGGGGCGTTGC
CGCGGAAGCGGGACATGGCCTCCGTGATCGGGCAAGCGTGGAGCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTACAGTGGGTGGCCCGATATAGTGCCGGTTGAATAGTGCCGGTTGCCGG
TATAGTGCCGGTGTTTTCGGCTCGCACACACCGGAATATCAAGTCTTTCT
GTACTCTGAATAGTGCCGGTGCCCGGTATAGTGCCGCTTTGCTCTCTGAA
CACATACCGGCACTATAGAGGGACCCCTACTGTACGGGTCACGAGGGTGC
TTCAGGTAACGTGGTTGTCAAACAGCACGTCGAGGGGGGCGGGAATGGCT
AGCGGACAACTTGTGGACAAACCCGGGGATGCTGTACGTTTGTCCCCTGG
GCTATGTTTTTTTTTTTTGTTATCCAACGTGTTTTTTGCAACCTTCAATA
CGTTCCTCTGAAACGGCGTCACGATGGGGGTTAATATGGGTGTAAAATAG
TTGCTTCAACACGTGGCACGGTTTTGGCGGAATCTGCTGCCGTACAACAA
GCCAAAAAGGGGGCAAAAGTGCCCATGTTGGACAGGCATATCACCATCCA
TAGGCATCCGTTTAACTTTCTTTTTTTTGTGACTCAGAACAGGAT
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protein sequence of EsuBft1580_3a-0001

>EsuBft1580_3 ID=EsuBft1580_3|Name=EsuBft1580_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=304bp
MTKAEEDVVEDLLLYAGRNFIPLTTADLTERVRRLCNDGRPIPWNSDKGP
GKDWLKGFLGRHEGISHRLARIYESNRVTSSEDERLHKFYDFWAEFLGEH
RPAADHIWNTDESGGTIQGAQGQQVYAERGQPVVPQMRSTSRENCTIVTT
INAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIK
YIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLSIHLVQLP
SHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQA
WSXX
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mRNA from alignment at Scaffold_390:9698..13344-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1580_3a-0001 ID=EsuBft1580_3a-0001|Name=EsuBft1580_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3647bp|location=Sequence derived from alignment at Scaffold_390:9698..13344- (Ectocarpus subulatus male Bft15b)
CTTGCGTTTGAGCACTTCAGCGTCGCGATCGGGTCTCGCAGCCACGAGAT
ACAGCAACCCGGCCACCAGCGCTCTTGATGTGGGGCATCTTAGCCCTTGT
CGGGCTCCTGTTGCTAAGCATGGGTCGGCAGAGAGTGGACCCCGTAGCCG
CTGAAAAGGCGTGTGAAGCGGTACGCAGCGGTCGCATGTCACAGAACGCC
GCTGCAGCTGCCTTTGGGTTGGGTATGTAGAAGCTCCCTCCAGCGGCGTC
TGGATGGTAATTGCGCCATGGCGCGAGGGTTGGCCCCGGGACTGTCATGA
CCAAAGCAGAGGAGGACGTGGTGGAAGATCTCCTGTTGTACGCTGGTAGA
AACTTCATTCCTCTCACCACCGCAGACTTGACGGAACGCGTGAGACGGCT
CTGCAACGACGGTCGGCCGATCCCGTGGANATGTAGAAGCTCCCTCCAGC
GGCGTCTGGATGGTAATTGCGCCATGGCGCGAGGGTTGGCCCCGGGACTG
TCATGACCAAAGCAGAGGAGGACGTGGTGGAAGATCTCCTGTTGTACGCT
GGTAGAAACTTCATTCCTCTCACCACCGCAGACTTGACGGAACGCGTGAG
ACGGCTCTGCAACGACGGTCGGCCGATCCCGTGGAACAGTGACAAGGGCC
CGGGGAAGGACTGGCTCAAGGGCTTCCTCGGAAGGCACGAGGGCATCAGC
CATCGACTCGCCCGCATCTACGAGTCTAACCGGGTGACCTCGTCAGAGGA
TGAGCGTCTGCACAAGTTCTACGATTTTTGGGCGGAGTTTCTCGGCGAGC
ACAGGCCTGCGGCCGACCACATTTGGAACACGGACGAGTCAGGTGAGCAT
AAGAGTCTACTGGTGTGGTGTCAGCAGCAGCTGCTGTGTGGCGGTTTGCG
GGCTTGTTTCTACGTTTTCAGCAGAAGTGCACAATGTGAAAATTACGTTG
AGTTCTGATGCTGCTGAAAGTTGGAGTTCCCCCATTCCCCCGTATGCACA
TCCTGCGTGCAGAGGACCACTGCTGGATGAACGCGCAAATTGTTGTTGTG
TACGCTGGGTGCTGCTCGGGGTCCTTGATTATGTCGGCAGTAAATACACA
CGCTGCTTGAAAGGAATTTTCGCTGGTGCTACACATGTTCTTACGCAGCA
CAGACGCGAAATTGACGTGTGGAAGTTGAAGCTGTTTGTGATGCCGCTGC
GTTGTGCATCTTGCTCACCTCCTCGACTAGTCTACTGCTGTTACTCTGAT
TAAAATGAAGCCTAGATCTAGATGTATTTTCGCCCTTGGCGCAAAGGCTA
GATTGTACTCTACACTTCTGTTATTGTGAAGCAGCTCTGCAGCAGCTGGG
GAACATTTCACATGTGAGGACATTCCACCCTGTGCGTCTGCCCTACCCGT
TCCCCCGCGCCCCCAACCCACGGTAGGCTGGACGTTGGTGGTGCACGTGA
GCGCTGTTTTGCCTCTACTTACTCTCCATCCGCTTTGATTTCCCCCACGC
GCGCCTTTCCACCACAAATTATCTTTGTAGGTGGCACCATCCAAGGTGCC
CAGGGACAGCAGGTATATGCGGAACGGGGGCAGCCGGTGGTCCCGCAGAT
GCGTTCCACTTCGCGAGAGAACTGCACGATCGTCACCACCATCAACGCCG
CCGGCGCCGTGTTGGCCCCTACCATCATCTTCAAAGGGCAGCGTTTCAAC
GGAGATTGGATCGTGGATCAGGACGGCCCGCCGGGTGCGACGTACACCTG
CACGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAGTACATCATGG
ACTTCCACGAGCAGCTGCGCAAGCGCAACTTGCTCGATGGAAAACCCCAT
GTGCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCCTGGAAGTCGTGGA
GTTAGCCAGGTCCCTCAGCATCCACCTCGTCCAGCTGCCCTCCCACATGT
CCCACATCACCCAGCCCCTGGACGTCGCTGGCTTCGGGTGCTTCAAGAAG
GAGCTGACCAAGGCGATCCAGGCCTTCCCGGCGACACACGGAGGGGCGTT
GCCGCGGAAGCGGGACATGGCCTCCGTGATCGGGCAAGCGTGGAGCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTACAGTGGGTGGCCCGATATAGTGCCGGTTGAATAGTGCCGGTTGCC
GGTATAGTGCCGGTGTTTTCGGCTCGCACACACCGGAATATCAAGTCTTT
CTGTACTCTGAATAGTGCCGGTGCCCGGTATAGTGCCGCTTTGCTCTCTG
AACACATACCGGCACTATAGAGGGACCCCTACTGTACGGGTCACGAGGGT
GCTTCAGGTAACGTGGTTGTCAAACAGCACGTCGAGGGGGGCGGGAATGG
CTAGCGGACAACTTGTGGACAAACCCGGGGATGCTGTACGTTTGTCCCCT
GGGCTATGTTTTTTTTTTTTGTTATCCAACGTGTTTTTTGCAACCTTCAA
TACGTTCCTCTGAAACGGCGTCACGATGGGGGTTAATATGGGTGTAAAAT
AGTTGCTTCAACACGTGGCACGGTTTTGGCGGAATCTGCTGCCGTACAAC
AAGCCAAAAAGGGGGCAAAAGTGCCCATGTTGGACAGGCATATCACCATC
CATAGGCATCCGTTTAACTTTCTTTTTTTTGTGACTCAGAACAGGAT
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Coding sequence (CDS) from alignment at Scaffold_390:9698..13344-

>EsuBft1580_3a-0001 ID=EsuBft1580_3a-0001|Name=EsuBft1580_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=912bp|location=Sequence derived from alignment at Scaffold_390:9698..13344- (Ectocarpus subulatus male Bft15b)
ATGACCAAAGCAGAGGAGGACGTGGTGGAAGATCTCCTGTTGTACGCTGG
TAGAAACTTCATTCCTCTCACCACCGCAGACTTGACGGAACGCGTGAGAC
GGCTCTGCAACGACGGTCGGCCGATCCCGTGGAACAGTGACAAGGGCCCG
GGGAAGGACTGGCTCAAGGGCTTCCTCGGAAGGCACGAGGGCATCAGCCA
TCGACTCGCCCGCATCTACGAGTCTAACCGGGTGACCTCGTCAGAGGATG
AGCGTCTGCACAAGTTCTACGATTTTTGGGCGGAGTTTCTCGGCGAGCAC
AGGCCTGCGGCCGACCACATTTGGAACACGGACGAGTCAGGTGGCACCAT
CCAAGGTGCCCAGGGACAGCAGGTATATGCGGAACGGGGGCAGCCGGTGG
TCCCGCAGATGCGTTCCACTTCGCGAGAGAACTGCACGATCGTCACCACC
ATCAACGCCGCCGGCGCCGTGTTGGCCCCTACCATCATCTTCAAAGGGCA
GCGTTTCAACGGAGATTGGATCGTGGATCAGGACGGCCCGCCGGGTGCGA
CGTACACCTGCACGGAGTCGTCCTTCATGTGTGGTGACGTGTTCATCAAG
TACATCATGGACTTCCACGAGCAGCTGCGCAAGCGCAACTTGCTCGATGG
AAAACCCCATGTGCTCGTGCTGGATGGGCACGCGTCGCACGTGAGCCTGG
AAGTCGTGGAGTTAGCCAGGTCCCTCAGCATCCACCTCGTCCAGCTGCCC
TCCCACATGTCCCACATCACCCAGCCCCTGGACGTCGCTGGCTTCGGGTG
CTTCAAGAAGGAGCTGACCAAGGCGATCCAGGCCTTCCCGGCGACACACG
GAGGGGCGTTGCCGCGGAAGCGGGACATGGCCTCCGTGATCGGGCAAGCG
TGGAGCANNNNN
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