EsuBft1580_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1580_2a-0001
Unique NameEsuBft1580_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:5289..7116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FU69
ProteomeIdEsuBft1580_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7FU69|-
Length133
Hectar predicted targeting categoryother localisation
Evalue8.49e-88
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_2aEsuBft1580_2aEctocarpus subulatus male Bft15bgeneScaffold_390 5289..7116 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_2a-0001-exonagat-exon-83607Ectocarpus subulatus male Bft15bexonScaffold_390 5289..5709 -
EsuBft1580_2a-0001-exonEsuBft1580_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 6205..7116 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_2a-0001-exonagat-three_prime_utr-5060Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 5289..5293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_2a-0001-cdsEsuBft1580_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 5294..5709 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_2a-0001-exonagat-five_prime_utr-3275Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 6995..7116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_2a-0001EsuBft1580_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 5294..6994 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1580_2a-0001 ID=EsuBft1580_2a-0001|Name=EsuBft1580_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1333bp|location=Sequence derived from alignment at Scaffold_390:5289..7116- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AATCGGCAGAGGCGCGCCTTTTTTTCAAAATGCCGGAAAGCGTCGATGCC
GACGTACACACACCGGTCACGACCAGGCGAGAGGCCCGAGGCATACCACA
GCAGACGCGATAAACCCACACCATGAACAACAACGCCGTAGCAGCGGCAG
GCCGGCCATCTAGAGCGAAATCGTTGCCTCTGAGACTGCAGGATGCTGGT
GAAAGTGGTGCTGCTGCTGGGCATGGGGTCGCCCAGACCGCGCCTGCTGG
CGCGGCACAGCGGGCACCGAGCGGCATGGCCCGCCAGGCCGTTCACAGCA
GGGTTACCCCCCATGCCGGTACACAACAGGGGGTGCCACCTGGCGCGGTG
ATGATGCCGGGCTTCTCGGACGACGCTGATCGGCAAGCTCGTCAGGCGGC
CTTAGTAAAGGTTCTGAACGACAAGCAATTTGGCGACGCCCCACAAAAAA
GTTGGACTGAGTCGGAGAGCGGCGACGACGACGACGAGGGGGGGGGCAGC
CCGACGTCAACTGGCAGCAGCAATGTGTCGGTAGAGGACAGTTCAGCTCC
GTCGGATATTGGCTCACAGTCGGGAGATGTCGTGTTCGAAAAGGAAATTC
GGGAAGCAATGACCGGGGGAGGGGGAGCGGGCACGAGGACCACAAACCAC
GGCAAGCGGAAGGCGAGCGCCGGCGGCAGCGTCGGAGGGAAGAACAAAGC
AGCAGCATCCCATCACGCGAGTGCCAAAAAAGCCCTGGGCAGGGATTACC
CGCACTGGGCCACACACTTTCTGAAGAGGACATGCGCGCACCGCAAGATC
CCGAGGATGTCGCAGAAGAGCAAGGGTTTCCTGGTGGCGGCCCTGCGATC
TCTCGACGCCAACATGAAACGGCCATCTCCGTACTTCGACGACCTCGATG
CTATCGCAGCCGGCAAATCTGGACGCGGCAGCGAGCAGGAGGAGGGTGAG
GAGGAGGGAGCCATTCCTGCGAAAGCGCTGCTTATGTTTCGAGGCCTTGT
CAACATGGTCGCCCTAGCACGTGACAGAACTGAACCGTTTACGGTCGAGG
GTGTGGACTACAGTGTGGTGGACCTTTACGACGCCATGGAGAAGGAAAAC
AAACCGGAACTGGAGGATTCTGCCGGCGGGGGTTTGTCGACGGGTGGTGC
AACCGGACCGGACGGGGGTGGTTCCGCCGGAGGGAGTGGCAGCATCACGG
AGCACCAGGGCCCACACTGCATGATGCGGCATGTTGGGATCCTGTGCGAA
GACTCCATCCGCCCACTTGTCATGAACAGCCGCTTGCAGGCGACCCGGCA
GGAGCTGGACACCTCAGCAGTTGNNNNNNNTAG
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protein sequence of EsuBft1580_2a-0001

>EsuBft1580_2 ID=EsuBft1580_2|Name=EsuBft1580_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=402bp
MNNNAVAAAGRPSRAKSLPLRLQDAGESGAAAGHGVAQTAPAGAAQRAPS
GMARQAVHSRVTPHAGTQQGVPPGAVMMPGFSDDADRQARQAALVKVLND
KQFGDAPQKSWTESESGDDDDEGGGSPTSTGSSNVSVEDSSAPSDIGSQS
GDVVFEKEIREAMTGGGGAGTRTTNHGKRKASAGGSVGGKNKAAASHHAS
AKKALGRDYPHWATHFLKRTCAHRKIPRMSQKSKGFLVAALRSLDANMKR
PSPYFDDLDAIAAGKSGRGSEQEEGEEEGAIPAKALLMFRGLVNMVALAR
DRTEPFTVEGVDYSVVDLYDAMEKENKPELEDSAGGGLSTGGATGPDGGG
SAGGSGSITEHQGPHCMMRHVGILCEDSIRPLVMNSRLQATRQELDTSAV
XX
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mRNA from alignment at Scaffold_390:5289..7116-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1580_2a-0001 ID=EsuBft1580_2a-0001|Name=EsuBft1580_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1828bp|location=Sequence derived from alignment at Scaffold_390:5289..7116- (Ectocarpus subulatus male Bft15b)
AATCGGCAGAGGCGCGCCTTTTTTTCAAAATGCCGGAAAGCGTCGATGCC
GACGTACACACACCGGTCACGACCAGGCGAGAGGCCCGAGGCATACCACA
GCAGACGCGATAAACCCACACCATGAACAACAACGCCGTAGCAGCGGCAG
GCCGGCCATCTAGAGCGAAATCGTTGCCTCTGAGACTGCAGGATGCTGGT
GAAAGTGGTGCTGCTGCTGGGCATGGGGTCGCCCAGACCGCGCCTGCTGG
CGCGGCACAGCGGGCACCGAGCGGCATGGCCCGCCAGGCCGTTCACAGCA
GGGTTACCCCCCATGCCGGTACACAACAGGGGGTGCCACCTGGCGCGGTG
ATGATGCCGGGCTTCTCGGACGACGCTGATCGGCAAGCTCGTCAGGCGGC
CTTAGTAAAGGTTCTGAACGACAAGCAATTTGGCGACGCCCCACAAAAAA
GTTGGACTGAGTCGGAGAGCGGCGACGACGACGACGAGGGGGGGGGCAGC
CCGACGTCAACTGGCAGCAGCAATGTGTCGGTAGAGGACAGTTCAGCTCC
GTCGGATATTGGCTCACAGTCGGGAGATGTCGTGTTCGAAAAGGAAATTC
GGGAAGCAATGACCGGGGGAGGGGGAGCGGGCACGAGGACCACAAACCAC
GGCAAGCGGAAGGCGAGCGCCGGCGGCAGCGTCGGAGGGAAGAACAAAGC
AGCAGCATCCCATCACGCGAGTGCCAAAAAAGCCCTGGGCAGGGATTACC
CGCACTGGGCCACACACTTTCTGAAGAGGACATGCGCGCACCGCAAGATC
CCGAGGATGTCGCAGAAGAGCAAGGGTTTCCTGGTGGCGGCCCTGCGATC
TCTCGACGCCAACATGAAACGGCCATCTCCGTACTTCGACGACCTCGATG
CTATCGCAGCCGGTGAGATGCTGGTATTGTGTAGATTCGTCGTCGAGTAG
AGTCCCAGCAGACGACACAGAGTAACGACAAAAAATAGGTAGTTACTCTG
CAATTGAACGCAGTGTGCGCAGAGGAAACAAACAAAATTACTGCTGTGTG
TGTGTAGTGCCCGCTTCAAAACAACCTATTTGTACAGTAGCAGGTAAATT
ACGGCATGCTCGAGAGCTGTTTTATTTTCTCCAGTAGGTGGGATGTTGAA
GGCACTCACAGCGTACCACTCGGCATGCTTTCTTGACGATATTTAATCGG
TGGTGCACCGACCAATACGGTAAACCTTTGGGTGTTCTGTCCTCTCACGC
CCAGAGGAAGTAAGGTAAGGTGAACGATTTTTTGTGGAGGACAGTCATCA
GCAATATGTAGTTTTGCCAAACTTGGGCGTGTACACCTGAGGCTTCCTCT
CATGCGAAGGCGTATTCATTGTCTGGGTCGCTTTCTCATATCCGGGCGTT
CGCGCAGGCAAATCTGGACGCGGCAGCGAGCAGGAGGAGGGTGAGGAGGA
GGGAGCCATTCCTGCGAAAGCGCTGCTTATGTTTCGAGGCCTTGTCAACA
TGGTCGCCCTAGCACGTGACAGAACTGAACCGTTTACGGTCGAGGGTGTG
GACTACAGTGTGGTGGACCTTTACGACGCCATGGAGAAGGAAAACAAACC
GGAACTGGAGGATTCTGCCGGCGGGGGTTTGTCGACGGGTGGTGCAACCG
GACCGGACGGGGGTGGTTCCGCCGGAGGGAGTGGCAGCATCACGGAGCAC
CAGGGCCCACACTGCATGATGCGGCATGTTGGGATCCTGTGCGAAGACTC
CATCCGCCCACTTGTCATGAACAGCCGCTTGCAGGCGACCCGGCAGGAGC
TGGACACCTCAGCAGTTGNNNNNNNTAG
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Coding sequence (CDS) from alignment at Scaffold_390:5289..7116-

>EsuBft1580_2a-0001 ID=EsuBft1580_2a-0001|Name=EsuBft1580_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1206bp|location=Sequence derived from alignment at Scaffold_390:5289..7116- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACGCCGTAGCAGCGGCAGGCCGGCCATCTAGAGCGAAATC
GTTGCCTCTGAGACTGCAGGATGCTGGTGAAAGTGGTGCTGCTGCTGGGC
ATGGGGTCGCCCAGACCGCGCCTGCTGGCGCGGCACAGCGGGCACCGAGC
GGCATGGCCCGCCAGGCCGTTCACAGCAGGGTTACCCCCCATGCCGGTAC
ACAACAGGGGGTGCCACCTGGCGCGGTGATGATGCCGGGCTTCTCGGACG
ACGCTGATCGGCAAGCTCGTCAGGCGGCCTTAGTAAAGGTTCTGAACGAC
AAGCAATTTGGCGACGCCCCACAAAAAAGTTGGACTGAGTCGGAGAGCGG
CGACGACGACGACGAGGGGGGGGGCAGCCCGACGTCAACTGGCAGCAGCA
ATGTGTCGGTAGAGGACAGTTCAGCTCCGTCGGATATTGGCTCACAGTCG
GGAGATGTCGTGTTCGAAAAGGAAATTCGGGAAGCAATGACCGGGGGAGG
GGGAGCGGGCACGAGGACCACAAACCACGGCAAGCGGAAGGCGAGCGCCG
GCGGCAGCGTCGGAGGGAAGAACAAAGCAGCAGCATCCCATCACGCGAGT
GCCAAAAAAGCCCTGGGCAGGGATTACCCGCACTGGGCCACACACTTTCT
GAAGAGGACATGCGCGCACCGCAAGATCCCGAGGATGTCGCAGAAGAGCA
AGGGTTTCCTGGTGGCGGCCCTGCGATCTCTCGACGCCAACATGAAACGG
CCATCTCCGTACTTCGACGACCTCGATGCTATCGCAGCCGGCAAATCTGG
ACGCGGCAGCGAGCAGGAGGAGGGTGAGGAGGAGGGAGCCATTCCTGCGA
AAGCGCTGCTTATGTTTCGAGGCCTTGTCAACATGGTCGCCCTAGCACGT
GACAGAACTGAACCGTTTACGGTCGAGGGTGTGGACTACAGTGTGGTGGA
CCTTTACGACGCCATGGAGAAGGAAAACAAACCGGAACTGGAGGATTCTG
CCGGCGGGGGTTTGTCGACGGGTGGTGCAACCGGACCGGACGGGGGTGGT
TCCGCCGGAGGGAGTGGCAGCATCACGGAGCACCAGGGCCCACACTGCAT
GATGCGGCATGTTGGGATCCTGTGCGAAGACTCCATCCGCCCACTTGTCA
TGAACAGCCGCTTGCAGGCGACCCGGCAGGAGCTGGACACCTCAGCAGTT
GNNNNN
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