EsuBft1580_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1580_11a-0001
Unique Name	EsuBft1580_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_390	contig	Scaffold_390:76890..80344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	38833.XP_003064319.1
ProteomeId	EsuBft1580_11
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	3041\|Chlorophyta
Length	145
Hectar predicted targeting category	other localisation
Evalue	3.83e-06
EggNOG OGs	2E8ZA@1\|root,2SFDP@2759\|Eukaryota,3817E@33090\|Viridiplantae,34N6Y@3041\|Chlorophyta
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-26_001940.1
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K11549
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1580_11a	EsuBft1580_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_390 76890..80344 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1580_11a-0001	EsuBft1580_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_390 77036..79700 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1580_11a-0001-exon	agat-exon-83636	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 76890..77213 +
EsuBft1580_11a-0001-exon	EsuBft1580_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 78329..78498 +
EsuBft1580_11a-0001-exon	agat-exon-83637	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 79389..80344 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1580_11a-0001-exon	agat-five_prime_utr-3273	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_390 76890..77035 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1580_11a-0001-cds	EsuBft1580_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_390 77036..77213 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1580_11a-0001-exon	agat-three_prime_utr-5058	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_390 79701..80344 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_390:76890..80344+
coding sequence from alignment at Scaffold_390:76890..80344+

spliced messenger RNA

>EsuBft1580_11a-0001 ID=EsuBft1580_11a-0001|Name=EsuBft1580_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1450bp|location=Sequence derived from alignment at Scaffold_390:76890..80344+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACAAAGAGGCAGGACAGAGAGTAGGTGTAAGGTGCATCGATCGCTTCCC
GGCGGAGCCTACTGTGAGGCCACAGAGCTCGATCAACTTTCGTGATCTTG
GAAACCATCAGACGTAATAGGGGACGAGAGAGGGAGAGCGGGAGGGATGG
CGGCAACGGCGACGAGGACGCTTCAGGAGATGAGGGATATCGTGAACAAC
GACATGCCGCAGATATACGACAGGACGGCCGGCGTGGACGACGTCCGCGA
GGTGTTAGAGCTGGAAGCTGCCATGGAGATGGAGTGTGAACGCCGCGAGA
TGGACGCAAGGGCCATGATCCGCGACACGATCGACCTGCTAGAACAACGG
CATCGGGCGATCGTTGAGCCATCGGAGCAGGCGTTTGTGGCCAGGGTCCG
GGAGGTCGAGCACGAGCGCGCTCAGGCAGCGTCTCACATCCAGGAGCAGG
CGGAGGAGGCGGCGGCGCGGGAGAGAGACATCGAGCGAATGCAGGGCGAG
GTGGAAGACACCCAGACGGAGATCGAGAACACCGTGGACGCCCACACCAT
GGAGATGCCCCGCGTGCAGAACGCCATCGGGCTCTACACCAACATAACTC
GCATCAAGTGGAACTACGAGACGGAGGGGGAGATCATGGCCGGCTGGCTC
GTTCCGCCGGAGGCCGGGGTGGGCATGAGGGGTGCCAACGGGACGGCGGT
TGTCGAGGGGTTTCAGTTTGACGCGGCGGGGAAGGACGATTTCGAGGTCG
CGAACAAGCTCTGGGATGTCATCGACGGCAAGGCGCGCGCCATGGTTGAG
GCATAAGTAGGTTTTCCCCCCGCCCGCACGGCTGCTGTGTTCGATCGTAC
GGCGAGGAGGCGTTTTTTTTTACGTGGTCATGGTGGTGTGGGTTGTTCGT
TGGTTGGGCTATCGGTTGCTGCGCACGAGTAGGAAGTGTATAGTAGTAGG
AACGGAGTGCTGTGGTGCTGTGTGTGGTATGTAGGTCGCGTGGTTCGTAG
CGGGAAAGCCCGTTGTGTTGCGATATGGCTCTTGGTTATAGCGCTGTCTG
GTAGAAGCGTGCTGGGTATCTCCAGGCGGGAAGAGCAGTGTTGACATTCG
AACACCACATTTATGTGACGGGCTAAGACGATGCCGTGCACGAAGGTGAG
GGGTTGCTGTCTGGAGTAGTTTCGCATGGTCTATCGTTTTTTCCCCAAGC
CCTTTTCAGAAAGTTATGCATGGTACATTTACTGAGTATGTAGGCTATCT
GAATCCGGTACGTGATGTACTGTATGTTAGAAACTCCATCCGAAGTAAGC
CGTTTTTGCATGTTTGTATCCACTCTCCCGTAAGTTACGTAGACGAAGAA
ATCAGGGATAACTCGTTGAACAATAGTCTACAAGCGACGAAACACACGCG
ACGTATGTGCAGCCTGGTGGTTTTCCAAAAAAATATGCGGTCTGTGAGGC

protein sequence of EsuBft1580_11a-0001

>EsuBft1580_11 ID=EsuBft1580_11|Name=EsuBft1580_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=219bp
MAATATRTLQEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERR
EMDARAMIRDTIDLLEQRHRAIVEPSEQAFVARVREVEHERAQAASHIQE
QAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNI
TRIKWNYETEGEIMAGWLVPPEAGVGMRGANGTAVVEGFQFDAAGKDDFE
VANKLWDVIDGKARAMVEA

mRNA from alignment at Scaffold_390:76890..80344+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1580_11a-0001 ID=EsuBft1580_11a-0001|Name=EsuBft1580_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3455bp|location=Sequence derived from alignment at Scaffold_390:76890..80344+ (Ectocarpus subulatus male Bft15b)
GACAAAGAGGCAGGACAGAGAGTAGGTGTAAGGTGCATCGATCGCTTCCC
GGCGGAGCCTACTGTGAGGCCACAGAGCTCGATCAACTTTCGTGATCTTG
GAAACCATCAGACGTAATAGGGGACGAGAGAGGGAGAGCGGGAGGGATGG
CGGCAACGGCGACGAGGACGCTTCAGGAGATGAGGGATATCGTGAACAAC
GACATGCCGCAGATATACGACAGGACGGCCGGCGTGGACGACGTCCGCGA
GGTGTTAGAGCTGGAAGCTGCCATGGAGATGGAGTGTGAACGCCGCGAGA
TGGACGCAAGGGCCATGATCCGCGGTGCGAATTATATGTGTGACCTAGCG
ATGTAGCAGACGATATGCGAGCGTGAACGAGTGCCCCCGCACTTCGCGAG
CGAGCGTTGCTTGTTGCTGGGTACTCCAATCTACTTCCAACTGACATGCA
GAAGGTGCTGTCCGAGCTCGTAGGACAACTTCCTGTGCTTTCTGGAGTCA
GTCTTTTTTTCTCTGGAGATTTGTCTTGTGTCACATGGTATTCAGTCGGT
ATTCAAGGTATTGACTAACTATGTATGCAATAGCTTTGCATTTTTGAAAC
GCGTGTGGCGGTGTGCTGCTGGGAGTGATCGTCTTTCATGACGAAAAAAG
ATTCTGATCTTCATCCGCACCTCCTCTTCCGTACCATGACATGAATTCCC
GTCACTACTGACTACAAGTTGATCTGAAACGAAGTGCCAAAACTTCAAAG
CGCTCGTTGAATAAAACGGCGGGGGTGCAAACCAGATGGTACTTCGAGTC
GGCTGCCGCCGAGGGCCAACCCGCTTGAGCTGCACACGGCACAACAACTT
GGCAATGGCGAACAACATGTAGGTTCTCGTCGACCAACTGCAGTTGCTAC
ACACATCCAAAGATCTTGATACACACGAGGTGCCCGGCGAAAGTCGTCTC
TAGCTACGCCCAGCGATTGCTGTTTCTCTGATAGAGGCTACATATCTCCA
CAAAGGTTGACACGCGAGTTTCACAATTCGATCGACGTGGTCTGCATCTT
CTCGTTGCCTCTCAAGAATCGATATCCGCAAGACCCGGAGAGATGGCAAC
CCCCCTCAGACCGACTTTCATAGCTCGATTTCTCCACGACCAAGACCGTC
TGTACCGTGCCGTATACCGTACCATGGTATTCCGCAATACACGGAGAGAT
GGCACCCCTCCTCAGACCGACTTTCATAGCTCGATATCTCCACAACCATG
TGGGTGCGGGAACAGCCCAATACGTCGACGCAAGGCCTCGACGAGATGTT
TCCAAAACATTTTTTTGGTGTTGGCAGGACTTGTCACAGACACCCACGGT
TGACAACCGCTACTTTGGCCACATGAGCGAGAGCTCATTCTTACGTTCTC
GTGTTGCCTCTTTGTGCTCGTGTTTGACGATCGCTCCAGACACGATCGAC
CTGCTAGAACAACGGCATCGGGCGATCGTTGAGCCATCGGAGCAGGCGTT
TGTGGCCAGGGTCCGGGAGGTCGAGCACGAGCGCGCTCAGGCAGCGTCTC
ACATCCAGGAGCAGGCGGAGGAGGCGGCGGCGCGGGAGAGAGACATCGAG
CGAATGCAGGTATACTGCACGGGACAACTCTGTTGCCGAAGTCGGGAAAC
TACGTGGGGGATGAGTGGATGTGTGTACAGTAGTAGGCCATGTTGGTTTT
TTGTCGTTTTCTTCGATGGTAATGTGAAACGAGTGAACCGTCCTCGACAG
ACATTTCTTCTTCGAGAATCGTGTGCAACAATAGTTGTTTACGAGCAGCT
AGCCTATTCGCTAACTTCGAGCAAACGCAATATTCGTGGTCACGTTGGTC
GTGAATGGCGCCAGCGAGCAGCGTGCACCTACATGTAGCCCTCATGTCGC
AACTGCTGCTGCTGTCATCCCGAAAATTCGGTCAAGCTCAGCCGAAGAAG
CCTATTCCCGTGAATCGTTAATGTTTTGTGGTGCGCGTACTGGATAGAAG
GACTCAGCAAGCGCCGCGACAGGAGTATATTTGAACATTCGCAGAGAGGG
GTGCTGCCTACGTAGCCTCTCGCTCGCAACTTCACCCCTTGGCGCTCAGC
TGGCCTGGTTCTACCGAAGCGACACATGTCACCATTCTCATGCTTATGTA
TGTATGTTGTGCAATAACAGGTCAAGGGCGTTTAGCCCCGAAAATGGCAC
AACACTGGCTTGTTTTGCCGCCAAATCTTACCGGCGACCTGTAGCCCAAG
CAAGTTGGTCGAGACTACGAATTGTCCACACACATGGATATTTGGAACCG
ACATGTTCACGTCGCTGGAGCACATTACCACATGCTAAGGTGTGAATGAA
ATCCCTATTTATCGATACCCACCAAGAGTCATCTGGTGTGCTGTACGAAC
GACTTGATCAAGAGCGAAATGGTCCTCCACCCCGCACGATGCAAAAGCCT
CTTTCTTTCCATGCCCTCGACACGCCAAAACAACAATATCGATGCTAAGG
GCGAGGTGGAAGACACCCAGACGGAGATCGAGAACACCGTGGACGCCCAC
ACCATGGAGATGCCCCGCGTGCAGAACGCCATCGGGCTCTACACCAACAT
AACTCGCATCAAGTGGAACTACGAGACGGAGGGGGAGATCATGGCCGGCT
GGCTCGTTCCGCCGGAGGCCGGGGTGGGCATGAGGGGTGCCAACGGGACG
GCGGTTGTCGAGGGGTTTCAGTTTGACGCGGCGGGGAAGGACGATTTCGA
GGTCGCGAACAAGCTCTGGGATGTCATCGACGGCAAGGCGCGCGCCATGG
TTGAGGCATAAGTAGGTTTTCCCCCCGCCCGCACGGCTGCTGTGTTCGAT
CGTACGGCGAGGAGGCGTTTTTTTTTACGTGGTCATGGTGGTGTGGGTTG
TTCGTTGGTTGGGCTATCGGTTGCTGCGCACGAGTAGGAAGTGTATAGTA
GTAGGAACGGAGTGCTGTGGTGCTGTGTGTGGTATGTAGGTCGCGTGGTT
CGTAGCGGGAAAGCCCGTTGTGTTGCGATATGGCTCTTGGTTATAGCGCT
GTCTGGTAGAAGCGTGCTGGGTATCTCCAGGCGGGAAGAGCAGTGTTGAC
ATTCGAACACCACATTTATGTGACGGGCTAAGACGATGCCGTGCACGAAG
GTGAGGGGTTGCTGTCTGGAGTAGTTTCGCATGGTCTATCGTTTTTTCCC
CAAGCCCTTTTCAGAAAGTTATGCATGGTACATTTACTGAGTATGTAGGC
TATCTGAATCCGGTACGTGATGTACTGTATGTTAGAAACTCCATCCGAAG
TAAGCCGTTTTTGCATGTTTGTATCCACTCTCCCGTAAGTTACGTAGACG
AAGAAATCAGGGATAACTCGTTGAACAATAGTCTACAAGCGACGAAACAC
ACGCGACGTATGTGCAGCCTGGTGGTTTTCCAAAAAAATATGCGGTCTGT
GAGGC

Coding sequence (CDS) from alignment at Scaffold_390:76890..80344+

>EsuBft1580_11a-0001 ID=EsuBft1580_11a-0001|Name=EsuBft1580_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_390:76890..80344+ (Ectocarpus subulatus male Bft15b)
ATGGCGGCAACGGCGACGAGGACGCTTCAGGAGATGAGGGATATCGTGAA
CAACGACATGCCGCAGATATACGACAGGACGGCCGGCGTGGACGACGTCC
GCGAGGTGTTAGAGCTGGAAGCTGCCATGGAGATGGAGTGTGAACGCCGC
GAGATGGACGCAAGGGCCATGATCCGCGACACGATCGACCTGCTAGAACA
ACGGCATCGGGCGATCGTTGAGCCATCGGAGCAGGCGTTTGTGGCCAGGG
TCCGGGAGGTCGAGCACGAGCGCGCTCAGGCAGCGTCTCACATCCAGGAG
CAGGCGGAGGAGGCGGCGGCGCGGGAGAGAGACATCGAGCGAATGCAGGG
CGAGGTGGAAGACACCCAGACGGAGATCGAGAACACCGTGGACGCCCACA
CCATGGAGATGCCCCGCGTGCAGAACGCCATCGGGCTCTACACCAACATA
ACTCGCATCAAGTGGAACTACGAGACGGAGGGGGAGATCATGGCCGGCTG
GCTCGTTCCGCCGGAGGCCGGGGTGGGCATGAGGGGTGCCAACGGGACGG
CGGTTGTCGAGGGGTTTCAGTTTGACGCGGCGGGGAAGGACGATTTCGAG
GTCGCGAACAAGCTCTGGGATGTCATCGACGGCAAGGCGCGCGCCATGGT
TGAGGCATAA