EsuBft1566_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1566_4a-0001
Unique NameEsuBft1566_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1137067..1138386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1566_4
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length57
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_4aEsuBft1566_4aEctocarpus subulatus male Bft15bgeneScaffold_242 1137067..1138386 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_4a-0001-exonagat-exon-14817Ectocarpus subulatus male Bft15bexonScaffold_242 1137067..1137383 +
EsuBft1566_4a-0001-exonEsuBft1566_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1138134..1138386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_4a-0001-cdsEsuBft1566_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1137067..1137383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_4a-0001EsuBft1566_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1137067..1138386 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1566_4a-0001 ID=EsuBft1566_4a-0001|Name=EsuBft1566_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=570bp|location=Sequence derived from alignment at Scaffold_242:1137067..1138386+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCTCCGAACGTGTGCCGCCCCTCGCGCCTAACGGTGGCATCGGC
GTCGAAGAGGGCCTTCCGCAGCTGCCCCATGATCGGCGGCAGGGTGGTCC
GGAGAGTATCCCGCGGCCAGCGCTCGATAGCGACGCACAAGAAGCCCGAC
CCCTTGCGCCGCAGATACGCTGAAAAAAAAGAAGCAAGGTCGGGGGGAAG
GGGAGATGGATCGGTACAGCACTGGGCCCTCTATAATGCCGGGGTGTGTT
CAGAGATTGCTCCTGCACAATACCGGACATCTGCACTATTCAAAGTACAG
AACGGCTTGTCGTTTCAGAAAAACGAAGATCGTATTTCTCTCACCTCCCT
GGGCGTGCTCAAGAACGGCAGCAGCGCGGGAATGATGGCCGCCGCAGGAG
CGCAGAAGCCCGACCCCACCGCCTTCGCCAGCCCGGAAACGACGGCGCAG
ACCAGCTGCGTAACCCGAGCCGCCCCGGGAACTTCGGCCCGGGTGTTCGT
TAGAGCGTGGCACACGAGTGCCAGCGATTCCTGGGGTTGCGGGGGGGCTG
TCTCTTATACACATCTGTGN
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protein sequence of EsuBft1566_4a-0001

>EsuBft1566_4 ID=EsuBft1566_4|Name=EsuBft1566_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=190bp
MNSPNVCRPSRLTVASASKRAFRSCPMIGGRVVRRVSRGQRSIATHKKPD
PLRRRYAEKKEARSGGRGDGSVQHWALYNAGVCSEIAPAQYRTSALFKVQ
NGLSFQKNEDRISLTSLGVLKNGSSAGMMAAAGAQKPDPTAFASPETTAQ
TSCVTRAAPGTSARVFVRAWHTSASDSWGCGGAVSYTHLX
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mRNA from alignment at Scaffold_242:1137067..1138386+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1566_4a-0001 ID=EsuBft1566_4a-0001|Name=EsuBft1566_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1320bp|location=Sequence derived from alignment at Scaffold_242:1137067..1138386+ (Ectocarpus subulatus male Bft15b)
ATGAACTCTCCGAACGTGTGCCGCCCCTCGCGCCTAACGGTGGCATCGGC
GTCGAAGAGGGCCTTCCGCAGCTGCCCCATGATCGGCGGCAGGGTGGTCC
GGAGAGTATCCCGCGGCCAGCGCTCGATAGCGACGCACAAGAAGCCCGAC
CCCTTGCGCCGCAGATACGCTGAAAAAAAAGAAGCAAGGTCGGGGGGAAG
GGGAGATGGATCGGTACAGCACTGGGCCCTCTATAATGCCGGGGTGTGTT
CAGAGATTGCTCCTGCACAATACCGGACATCTGCACTATTCAAAGTACAG
AACGGCTTGTCGTTTCAGTGTGTGCGAGCCGAAAACAAGGGCACAATACC
GGGCACCTGCGCTAGTCAACCTGCACTATAAGAGGGATGAATGCATTCCA
ACTTGGATACCACCCCCCCGACAGTATTCCTCTACGAAGCCCTATCCCCC
ACCGGTGATACTATTCCCAGACGCTCATCAATGTGTTCATCACGAGGGTG
TGGTTGAGGTTCCAAACTGCAGCGCCACCGCAAGGTCTTCACCTTTCTTG
GAGCCAACCAGAGACACTGTGGCCGCCCGCAGAACGCTGGGAGAGGGGCA
CTCCGCCAGCATGACCTCAACGCTTCCCACAGCCGCCTCCTGCACTGCCT
GAACATCAACAAGAAACCGCGGGAAGAGAAGACATGGCGGGAGGGGGAGG
GGGACACCTTGATTGGGTTTTTGTAGGTGACTCTCAGACCCTCAGATGGG
GGCAGGGTAATGAGTGCAATGGCCACATGGTGAGGTGTAATTGCCCTTCT
TTTGGCATCCGCCCTACGTGGTTTCACCGTTGTTGTTTTCCACCCGCACG
GACACCTGCAGCAGGCAAAAACAACGGCAAGTCTGCCAAGCAACAACAAA
AAAAACACACAAAGAGAGAACTCGTTGTGGCCTTGAGAAACATTTTGTGT
TCGCAACCGCCGTGAGACCGAAGTTTTTTCATTGGTCAGCCGGCTAGCGC
CGTCGATGCTAATAAGAACGAAACATGCAGAGAGAGAGGAGAATCGAAAT
CACAACAAATAAACAAGGAAAAACGAAGATCGTATTTCTCTCACCTCCCT
GGGCGTGCTCAAGAACGGCAGCAGCGCGGGAATGATGGCCGCCGCAGGAG
CGCAGAAGCCCGACCCCACCGCCTTCGCCAGCCCGGAAACGACGGCGCAG
ACCAGCTGCGTAACCCGAGCCGCCCCGGGAACTTCGGCCCGGGTGTTCGT
TAGAGCGTGGCACACGAGTGCCAGCGATTCCTGGGGTTGCGGGGGGGCTG
TCTCTTATACACATCTGTGN
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Coding sequence (CDS) from alignment at Scaffold_242:1137067..1138386+

>EsuBft1566_4a-0001 ID=EsuBft1566_4a-0001|Name=EsuBft1566_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=570bp|location=Sequence derived from alignment at Scaffold_242:1137067..1138386+ (Ectocarpus subulatus male Bft15b)
ATGAACTCTCCGAACGTGTGCCGCCCCTCGCGCCTAACGGTGGCATCGGC
GTCGAAGAGGGCCTTCCGCAGCTGCCCCATGATCGGCGGCAGGGTGGTCC
GGAGAGTATCCCGCGGCCAGCGCTCGATAGCGACGCACAAGAAGCCCGAC
CCCTTGCGCCGCAGATACGCTGAAAAAAAAGAAGCAAGGTCGGGGGGAAG
GGGAGATGGATCGGTACAGCACTGGGCCCTCTATAATGCCGGGGTGTGTT
CAGAGATTGCTCCTGCACAATACCGGACATCTGCACTATTCAAAGTACAG
AACGGCTTGTCGTTTCAGAAAAACGAAGATCGTATTTCTCTCACCTCCCT
GGGCGTGCTCAAGAACGGCAGCAGCGCGGGAATGATGGCCGCCGCAGGAG
CGCAGAAGCCCGACCCCACCGCCTTCGCCAGCCCGGAAACGACGGCGCAG
ACCAGCTGCGTAACCCGAGCCGCCCCGGGAACTTCGGCCCGGGTGTTCGT
TAGAGCGTGGCACACGAGTGCCAGCGATTCCTGGGGTTGCGGGGGGGCTG
TCTCTTATACACATCTGTGN
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