EsuBft1566_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1566_2a-0001
Unique NameEsuBft1566_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1123031..1126444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog15368.BRADI3G29820.1
ProteomeIdEsuBft1566_2
Protein domainsIPR012337
Protein domainsIPR001584
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl35493|Streptophyta
Length1584
Hectar predicted targeting categoryother localisation
Evalue7.19e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K20093
EC3.6.4.12
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
BRITEko00000,ko01000,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_2aEsuBft1566_2aEctocarpus subulatus male Bft15bgeneScaffold_242 1123031..1126444 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_2a-0001-exonagat-exon-14813Ectocarpus subulatus male Bft15bexonScaffold_242 1123031..1124076 -
EsuBft1566_2a-0001-exonEsuBft1566_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1125907..1126444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_2a-0001-cdsEsuBft1566_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1123031..1124076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1566_2a-0001EsuBft1566_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1123031..1126444 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1566_2a-0001 ID=EsuBft1566_2a-0001|Name=EsuBft1566_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1584bp|location=Sequence derived from alignment at Scaffold_242:1123031..1126444- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTCGTAGTGAGCGGCGGCATGTTGGTCGATGGCGCGGCACCGGG
CGGCGCGACGGCGGGAGACGGTGGCACGACGGCGAACGGCGTTGCAGGCG
GCGCGGTGATGGTGAACACTGGCGCGGTGGCGAGCGTCGTTGCAGGTGGT
CCGGTGACCGGTGGCGATGGTGTAGACGGCGCCGCCGGCGATGGTGGTGT
GGCAGTTGCAGGCGGCGCCTGTGAGGATATGGCAGCGGGTAAAGTGGGAT
GTCGGGCGAACGGTGAGGGGGGTGAAAGAGGCGTTGAAATGTACGGTGGC
ACGACGGTGAACGGCGTTGCAAGCGGCGCGGTGGTGGCAAACGGTGGCAC
GGCTGCGAGCGGCGTTGCACGTGGCGCGGTGGTGCTGTGCGGTGGCGTTG
CAGGCGGCGCGGTGGTGGTGTACGGTGGCGTCGCTGGCGGCGCGGTGACC
GTTGGCGATGGTGTGGCTGCGGTAGACGGCGCCGCCGGCGATGGTGGTGT
GGAAGTTGCCGGCGGCGCCTGCGAGGATATGGCAGCGGGGTACGGTCCGA
CTTCGAGCTTCCCGTCCATCGGTACTGCCGCTTCGGCTTCGAGCATCCCG
TCCACCACTTTCGGTGTAGTACCTCAGAGTGATATTTTCCCGTCTATCGA
TGTTGATGTAGTGCCTACGTCGATCCGAGATTTTCAGCCTGTCCTAGCCG
CAGCCATCGCCTCATCCGACGTCCTGTCTCCCTCAGTCGTGAACCCGAAT
GTGTCGCGAGAGATAGAGATCATGCCCCTTGAGTCCCAGGATAATTTGCC
TTTGATGGACATGAGTATGTTCTTGGATGTAGGCTTGATGACCGGACAAG
ACTCGGTCCCACCGGGTGACTTTTATCCCGACCCATTAGGCGTGTGTGAG
TCCGTGAAGCCCCCCGTTGCGTTCGCTGTGATGCAAGATGAGTTGGACGC
GCTCAAAAACTTCGTTGCCGAGTGCCGTGTGAAGCAAGATGTAGGTCCCC
CCTCCCTTTCCCATGCTTTGGCGATTATCGCCCCCGGTGGTCCAGCGTTC
ACTGTAGGAAAACCCACGTCCACCATCGACATTAATTTGTTCCACGCTTC
CACCGGCCACGTGAATGAATTTTTGATGCGGGAAACCGCCAAGCAGCAGG
GTGTTCAATTGGTGGGGGAACTGCAGCCATGCGTCGGCTGCATCGAGGCG
AAGGGCAGGAGGGCCCCGGTGCCGCGGCGTGGAGTCACCCGCGCGGCGGT
ACCGTTCGGCAAGGTGCACATCGACATCACCGGCCCGTACTCTGAGGCGT
TCGATGGTTCCCGTTACCTGATTATGTTCGTGGACAGTGCGTCGCGGTGG
CAACGGGCGTACGGCATGCGGGCCAAGAGCGACACCCTGACGTACACGCG
GCGTTTCCTCGCCGACCTGAACGGCAACGGCCCTCTGGGGTGTTTCCGCA
TGGACAACGCGGGGGAGTTCACGAGTGCTGCCTTCGTCGCGTTCTGCGAC
GCCGCTGGCATCCGGCGCGAGTACACCGCGCCCGACACCCCGAAGCAGAA
TGCGGTCGTGGAAAGCGCCATCTGGCGAGCNNNN
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protein sequence of EsuBft1566_2a-0001

>EsuBft1566_2 ID=EsuBft1566_2|Name=EsuBft1566_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=528bp
MVLVVSGGMLVDGAAPGGATAGDGGTTANGVAGGAVMVNTGAVASVVAGG
PVTGGDGVDGAAGDGGVAVAGGACEDMAAGKVGCRANGEGGERGVEMYGG
TTVNGVASGAVVANGGTAASGVARGAVVLCGGVAGGAVVVYGGVAGGAVT
VGDGVAAVDGAAGDGGVEVAGGACEDMAAGYGPTSSFPSIGTAASASSIP
STTFGVVPQSDIFPSIDVDVVPTSIRDFQPVLAAAIASSDVLSPSVVNPN
VSREIEIMPLESQDNLPLMDMSMFLDVGLMTGQDSVPPGDFYPDPLGVCE
SVKPPVAFAVMQDELDALKNFVAECRVKQDVGPPSLSHALAIIAPGGPAF
TVGKPTSTIDINLFHASTGHVNEFLMRETAKQQGVQLVGELQPCVGCIEA
KGRRAPVPRRGVTRAAVPFGKVHIDITGPYSEAFDGSRYLIMFVDSASRW
QRAYGMRAKSDTLTYTRRFLADLNGNGPLGCFRMDNAGEFTSAAFVAFCD
AAGIRREYTAPDTPKQNAVVESAIWRAX
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mRNA from alignment at Scaffold_242:1123031..1126444-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1566_2a-0001 ID=EsuBft1566_2a-0001|Name=EsuBft1566_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3414bp|location=Sequence derived from alignment at Scaffold_242:1123031..1126444- (Ectocarpus subulatus male Bft15b)
ATGGTCCTCGTAGTGAGCGGCGGCATGTTGGTCGATGGCGCGGCACCGGG
CGGCGCGACGGCGGGAGACGGTGGCACGACGGCGAACGGCGTTGCAGGCG
GCGCGGTGATGGTGAACACTGGCGCGGTGGCGAGCGTCGTTGCAGGTGGT
CCGGTGACCGGTGGCGATGGTGTAGACGGCGCCGCCGGCGATGGTGGTGT
GGCAGTTGCAGGCGGCGCCTGTGAGGATATGGCAGCGGGTAAAGTGGGAT
GTCGGGCGAACGGTGAGGGGGGTGAAAGAGGCGTTGAAATGTACGGTGGC
ACGACGGTGAACGGCGTTGCAAGCGGCGCGGTGGTGGCAAACGGTGGCAC
GGCTGCGAGCGGCGTTGCACGTGGCGCGGTGGTGCTGTGCGGTGGCGTTG
CAGGCGGCGCGGTGGTGGTGTACGGTGGCGTCGCTGGCGGCGCGGTGACC
GTTGGCGATGGTGTGGCTGCGGTAGACGGCGCCGCCGGCGATGGTGGTGT
GGAAGTTGCCGGCGGCGCCTGCGAGGATATGGCAGCGGGTGAATTAGGAT
GTCGGGCGAACGGTGAGGGGGGTAATAGAGGCGGTGAAATGTACTCCATT
AAATACGGTGCGGCAGCGACATCCGAATCCCCCCCTTCGCCCGCCGGCGC
CGGCATCTCCGGCGTCGGGGTCAGCAACGGCGCGCGGTCGGAGACCCACA
CGACGTTGTTCGTCATGCACACGCGCCCCGTCGCCAACTTGAGGACCTTG
ACCACCGACTCGTGATGGTTGGCGCCGTTGTTGAGGTAGCAGCACAGCAC
TGCCTGGGGATCCATCTTCCGCGCGCGCATCACACGCATGTACCCCGGCT
GTAAGAACGAGCGTGTTAGGATAATCCGAACTGGGGGTAGCTTGTCGCAA
GACGTGTGTTGAATAGGGTATCGGCAACTCGGCGGGCTAGCGCCGAGGAA
AAAAACTTGTTGTGATTAGTCGCATCCACATACACACACACAAGCCCCGT
TGAGGGGGGCGACGCCGTCTACAACAGGGGTACCTTGTACATCCCTGGAA
TCCCTTCTACGTACCACACATGTTATCCGGTATTCCGCTCTACCTCATTC
CATGGGAACATCCAGCACCAACCACTTGGCGTTGCTTCAAGAATATCTAT
CAGCATGATCTACGAGAGAGAGCAATGGTACTGAACATTTACTATTAATA
GTACAGGACATAAGCCAATATTTCCATACGTAACGCATCTGTACGCGGAG
AAATTACTGCTGAAGCATTCTCTGCTCGAGGGATCGCGTGTCTCTCACTC
TCGCATGAATCTCTCGCATGAATCTCTCGCATGAACTTATCTACATAGTC
ATGGCTCTTAGTTTTCCTGGTCATCTCTAGGAACTGCCGTCGTCTGGACC
TCTGCGTTCTCTGTGGATCTTTCTGCGTGTGTTGGCCAACTAAGCGCCAG
TGTTCAACATATCTTCATGTCTCTACACAGCACAAGAAGTACTCCTACTT
CTGCTCTTCTTCAACCACTTGCGGTGCCAACCATCTCGAGTAACATCGAG
AGGCACAGCCTTGCCCACTTGTCAAGAGTATCTCAGACGATATCCACAAC
AGATTATGAGCCTCGACTGTGAGTGAGTGGAGGCCTGCGGCGACTGCGAC
TCCTGCTGCTGTCGTCGAGTGCTGTGCGTGCTCGCGCACATCGTTTTCTA
CGATTCTGCGGGGAAATCCTTCTGCTAGAGTTAGCTTCCACTGGAGTGTC
TGCGCTGAGTCAACCCGCTTGCTTACTGGGCCCGGACTAATCACCTGGCC
TTCGCTGCTGCACATTCGGTACGCTACTGCTGTTCGTGTTGAGCGTTCGG
GGGCATGATTACTAGGCATTGATTACGGTCGGCGTATAAGGTTGTGCAAA
CAGTTTGTTACGGTTGGTCGTGTGCAGAGTGCCTTTCACGAGGTTTTGAG
TGTGTCACCAACAACCAAATTGGTCGCTCGTTCAAAACGTCTTTCACGTG
CAGAGTGCAGCCTCAGTACGTGACAAGGTTGAGGATCTGACCTACAGTAG
GCTGGTCAGCATCCTTTGCTGCAGTCTCACCCATACAGATTCACATACTA
CGTGCCGACGTCACAACAACTACGCAGAAAAAGCACAGGATAATGTTGGA
TGTGCACCTTTTCGGCGGTCGGCTTAGTTTCGCATATTCGGATATCGGAT
GCTCTCTATCGGCCACCCGCTTGCCCCCCTCGTACCGCGACGGTGATGTA
ATCCCCTCTACCGTTGTCCCTCCCCCCGTTGTCCGCCAAGCGTCTCCGCC
TGGCGTTGGCACTGGCCTTTTCGCGCAAAACCCCCCTCCCCCTTCTCAGA
TTTCAGGATCGGGTGCAGGGTACGGTCCGACTTCGAGCTTCCCGTCCATC
GGTACTGCCGCTTCGGCTTCGAGCATCCCGTCCACCACTTTCGGTGTAGT
ACCTCAGAGTGATATTTTCCCGTCTATCGATGTTGATGTAGTGCCTACGT
CGATCCGAGATTTTCAGCCTGTCCTAGCCGCAGCCATCGCCTCATCCGAC
GTCCTGTCTCCCTCAGTCGTGAACCCGAATGTGTCGCGAGAGATAGAGAT
CATGCCCCTTGAGTCCCAGGATAATTTGCCTTTGATGGACATGAGTATGT
TCTTGGATGTAGGCTTGATGACCGGACAAGACTCGGTCCCACCGGGTGAC
TTTTATCCCGACCCATTAGGCGTGTGTGAGTCCGTGAAGCCCCCCGTTGC
GTTCGCTGTGATGCAAGATGAGTTGGACGCGCTCAAAAACTTCGTTGCCG
AGTGCCGTGTGAAGCAAGATGTAGGTCCCCCCTCCCTTTCCCATGCTTTG
GCGATTATCGCCCCCGGTGGTCCAGCGTTCACTGTAGGAAAACCCACGTC
CACCATCGACATTAATTTGTTCCACGCTTCCACCGGCCACGTGAATGAAT
TTTTGATGCGGGAAACCGCCAAGCAGCAGGGTGTTCAATTGGTGGGGGAA
CTGCAGCCATGCGTCGGCTGCATCGAGGCGAAGGGCAGGAGGGCCCCGGT
GCCGCGGCGTGGAGTCACCCGCGCGGCGGTACCGTTCGGCAAGGTGCACA
TCGACATCACCGGCCCGTACTCTGAGGCGTTCGATGGTTCCCGTTACCTG
ATTATGTTCGTGGACAGTGCGTCGCGGTGGCAACGGGCGTACGGCATGCG
GGCCAAGAGCGACACCCTGACGTACACGCGGCGTTTCCTCGCCGACCTGA
ACGGCAACGGCCCTCTGGGGTGTTTCCGCATGGACAACGCGGGGGAGTTC
ACGAGTGCTGCCTTCGTCGCGTTCTGCGACGCCGCTGGCATCCGGCGCGA
GTACACCGCGCCCGACACCCCGAAGCAGAATGCGGTCGTGGAAAGCGCCA
TCTGGCGAGCNNNN
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Coding sequence (CDS) from alignment at Scaffold_242:1123031..1126444-

>EsuBft1566_2a-0001 ID=EsuBft1566_2a-0001|Name=EsuBft1566_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1584bp|location=Sequence derived from alignment at Scaffold_242:1123031..1126444- (Ectocarpus subulatus male Bft15b)
ATGGTCCTCGTAGTGAGCGGCGGCATGTTGGTCGATGGCGCGGCACCGGG
CGGCGCGACGGCGGGAGACGGTGGCACGACGGCGAACGGCGTTGCAGGCG
GCGCGGTGATGGTGAACACTGGCGCGGTGGCGAGCGTCGTTGCAGGTGGT
CCGGTGACCGGTGGCGATGGTGTAGACGGCGCCGCCGGCGATGGTGGTGT
GGCAGTTGCAGGCGGCGCCTGTGAGGATATGGCAGCGGGTAAAGTGGGAT
GTCGGGCGAACGGTGAGGGGGGTGAAAGAGGCGTTGAAATGTACGGTGGC
ACGACGGTGAACGGCGTTGCAAGCGGCGCGGTGGTGGCAAACGGTGGCAC
GGCTGCGAGCGGCGTTGCACGTGGCGCGGTGGTGCTGTGCGGTGGCGTTG
CAGGCGGCGCGGTGGTGGTGTACGGTGGCGTCGCTGGCGGCGCGGTGACC
GTTGGCGATGGTGTGGCTGCGGTAGACGGCGCCGCCGGCGATGGTGGTGT
GGAAGTTGCCGGCGGCGCCTGCGAGGATATGGCAGCGGGGTACGGTCCGA
CTTCGAGCTTCCCGTCCATCGGTACTGCCGCTTCGGCTTCGAGCATCCCG
TCCACCACTTTCGGTGTAGTACCTCAGAGTGATATTTTCCCGTCTATCGA
TGTTGATGTAGTGCCTACGTCGATCCGAGATTTTCAGCCTGTCCTAGCCG
CAGCCATCGCCTCATCCGACGTCCTGTCTCCCTCAGTCGTGAACCCGAAT
GTGTCGCGAGAGATAGAGATCATGCCCCTTGAGTCCCAGGATAATTTGCC
TTTGATGGACATGAGTATGTTCTTGGATGTAGGCTTGATGACCGGACAAG
ACTCGGTCCCACCGGGTGACTTTTATCCCGACCCATTAGGCGTGTGTGAG
TCCGTGAAGCCCCCCGTTGCGTTCGCTGTGATGCAAGATGAGTTGGACGC
GCTCAAAAACTTCGTTGCCGAGTGCCGTGTGAAGCAAGATGTAGGTCCCC
CCTCCCTTTCCCATGCTTTGGCGATTATCGCCCCCGGTGGTCCAGCGTTC
ACTGTAGGAAAACCCACGTCCACCATCGACATTAATTTGTTCCACGCTTC
CACCGGCCACGTGAATGAATTTTTGATGCGGGAAACCGCCAAGCAGCAGG
GTGTTCAATTGGTGGGGGAACTGCAGCCATGCGTCGGCTGCATCGAGGCG
AAGGGCAGGAGGGCCCCGGTGCCGCGGCGTGGAGTCACCCGCGCGGCGGT
ACCGTTCGGCAAGGTGCACATCGACATCACCGGCCCGTACTCTGAGGCGT
TCGATGGTTCCCGTTACCTGATTATGTTCGTGGACAGTGCGTCGCGGTGG
CAACGGGCGTACGGCATGCGGGCCAAGAGCGACACCCTGACGTACACGCG
GCGTTTCCTCGCCGACCTGAACGGCAACGGCCCTCTGGGGTGTTTCCGCA
TGGACAACGCGGGGGAGTTCACGAGTGCTGCCTTCGTCGCGTTCTGCGAC
GCCGCTGGCATCCGGCGCGAGTACACCGCGCCCGACACCCCGAAGCAGAA
TGCGGTCGTGGAAAGCGCCATCTGGCGAGCNNNN
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