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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1562_3 |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | SignalP-noTM |
Protein domains | SIGNAL_PEPTIDE_N_REGION |
Protein domains | SIGNAL_PEPTIDE |
Protein domains | SIGNAL_PEPTIDE_C_REGION |
Protein domains | SIGNAL_PEPTIDE_H_REGION |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 4 |
Length | 196 |
Hectar predicted targeting category | signal peptide |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1562_3a-0001 ID=EsuBft1562_3a-0001|Name=EsuBft1562_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1964bp|location=Sequence derived from alignment at Scaffold_647:594771..605943+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCTGTGTCGGCGTTCTAATCAAAGCGATAAAACATTTCCCATCCAAGAA CCGGGCATATACGAACAGCTCCAGGATACGGAGGAGAAGGAGTTTTTTTG TAATATGCACACATGATCTTCTTCTGGACCTTCATGTGTCTAAGCCTGGC GTCCGCCGTTGATGGACCCCATGGAAGTACGGACATGCGAATCTCTACAC CCCGCCCCCTAGACCCCTGCGTCACGGACGACGACTGCACCGTGCCCGAC GAGATCTGCTGCCCGTCGTTGAAGCTCTGTGACGTGCCCCTTATCAGCGG CGCTTGCCGGGATCCTATCCCCGCGCCCACGCCGGGTACCCCAGCTCCAA CTACGCCGGGCCCCATCACTCCAGAGAGTTCCGGAGAGCCGGATTGCCTC GGAGTGGAACGATAGCTGCGACGAATCTTTAAAGCTGGTTTTCCTCCACG TGCCCAAGACCGCTGGAGAAAGCGTGGAGGCTGCCCTGAAAATAAAGAAG AAGCACGATGTCGCACGGGAAAGGAGGCAAAGCATGGGAGAAGAAGCTTG GGGTTGTGCGTTCAAGTTTTCGGTCGCTCGCAATCCTTGGTCACGGTGGG AAAGCTGGTACAGCTTCTGCAAGAGTGGTTATGGAAAGGAGCGCGTGCTA CCGTCGCCGCATTGGGGGTGCCTATTGGCCCGCTCGCTGACACTATCTTC GTGGACTAAGCACATGGTTGTGCTTCTTCGTGGTCTTGAAGCGCTCCCTC CGGATATTAGGGGCAATCTCGAGAGGAATGATGGAGAGTTTTCCAGGCCG TCGTGGTTCGGATCTCAGTCGGAGTACGTTACGGATGGTGTTCACCTCGA CGTGCTCCTGCCGAACTTTATTATATCATTTGAGAATCTCCAAAGCGACT TCGAATGCATGGCTACTCTTCTGGGTCTTCCGGCGAAGCTTGGACACAAG AATCCGAGCGTACTTGTCGAAGGTGGTATCTAGCCAACTGTAAAGCTCTA GGTAGTTTGATTGAAACGCTCTCTGTCCTCTTTTTCGTAGTGATTTTCTT CTCACCTGCATGAGACACTACGTATCGCTGCTGAAGCCCCATCCATGTAG TCTAGACCGAAAAAACCGAAGGCCACTGATTGCTGCTTCATGTATTTCTG AACAGCTGACTCCATGAATAGAAGAAAATGCGGTACGACGTTGTCCCTCT CAAGTGTCTGCGTGCGCCAACACTTTGCAGAGTGCATACGCCACCACCAT CGGCCTCACAAGGCAACAACCCCTCTAGTGACTACATCGTGCAGCTTCCC ATCAACTCCCGTGGATATGTTTGAATCTTCTTGTTCCAATGCTCCAATGC TTACAAACCCACGATGCAGGAACGTCTACCGCCGAGCGAATTGGAGCTTT TGACCAAGAGGCGCGTGATCTCATTGGCGAATATAACAGATTTGAAGTAG AGTTCTATGGGTACGAGTTCCCGGTGTAGTGGGACAGGTACTAGGCGGAG GCGTGAGCTCGGGAGTGGAGAAGGGCTCAGCCGATATCTTGTTGGCTCTG CGCTGTGCGTAGATATACGGAGACTAGGCGCCTGGGTATGGCTATTCCGG CTCACATGTCATGCCCATAGTCCGACGGTGTGTTGGAAGGGGACATGTGT TGGTACTCGATGTGTGTGTGATGGATGGCATGTCACGCAAATAAGTAGCT AGGTAACACCCGAGAGAGGAGCCCGCTGGCGCTTCTCTCCTGCGACGCGA CGTGATACACGAACCTTCGGGGAATATCATTACCCGGACTACTGTACCTT TATCTCGTAAAGAGAAATTATTCTTGATACGGAGTATTGTTTTTCGTTTG CCATCCGACAAGGTGGAGAGCCTCGATCGAAGCCATGTTCATCGCTCAAC AAGAGTCGAACTCGAAGCTACGCATGAATGCATCACGTAGCCGTGACATG TTTTTTTTTTTTTT back to topprotein sequence of EsuBft1562_3a-0001 >EsuBft1562_3 ID=EsuBft1562_3|Name=EsuBft1562_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MIFFWTFMCLSLASAVDGPHGSTDMRISTPRPLDPCVTDDDCTVPDEICC PSLKLCDVPLISGACRDPIPAPTPGTPAPTTPGPITPESSGEPDCLGVER back to topmRNA from alignment at Scaffold_647:594771..605943+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1562_3a-0001 ID=EsuBft1562_3a-0001|Name=EsuBft1562_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=11173bp|location=Sequence derived from alignment at Scaffold_647:594771..605943+ (Ectocarpus subulatus male Bft15b) CCCTGTGTCGGCGTTCTAATCAAAGCGATAAAACATTTCCCATCCAAGAA
CCGGGCATATACGAACAGCTCCAGGATACGGAGGAGAAGGTATGATGGCA
GGAGCCTCGGAGGAGGAGTTCAGGGCGTGGAACGAGTTTCCGCTGAGCGA
GCAGAGTAAATCGTTCGCAGCTTTCGGTACAAAGCCACTGATATGATACG
AAGAGCATCGAACAGCAAGCTGCAATGTCGGTGTTGGGCGGTTGGCAGAA
TGGCTTGCTCGCGCGCGCCTCGAGCTTTGCGTTGGTCGTGGGTGTATGTT
GATGTTCTCTTTTGAAGAGGGTGGTGACAACGCCGCTTATGGGTTCCGGA
CCTTTGTTGTTCCGATCAGCGTTTTGTGCAAAATGGTGAGCGCTGTATAG
TCTAAGTAACCGGGTTCGCTAGTCTTCGGTCAAAGCTTTAGCTTCCCACC
CCAAACACCCACGAATTTTGTATTTGTCGCAAATTGGAAAACATCTCGCT
GCACCACCGCAGCCTACGTTGAACGAGCAACACCAGCAGCCCACGAAATA
CTCACACACTTGGCGTTGGCACACAATCTACCGACCATGACGGTGGTCTC
GGTGGATGGTCCTTGAGCACCAACCTGAACGGTCGCACTACTCATACGTT
TTCAATCTCCGCATAGTCGCCGTCCCTCCAACCCTCACAATTCACGCCGT
GTGTTCTCTCGCTCGATTCAGGAGTTTTTTTGTAATATGCACACATGATC
TTCTTCTGGACCTTCATGTGTCTAAGCCTGGCGTCCGCCGTTGATGGACC
CCATGGAAGTACGGACATGCGAATCTCTACACCCCGCCCCCTAGACCGTG
AGTTCTGAGTGGCGAGTAGGACGAAACCTCAGGCACCGGATGTTGCAGCT
CTAGAGACAACATTGTCTTGGGATGAATTTGCATGGGATGTTAACCAAAG
CTGGGTTTGGTTCCTGTGTCAGACACGTCTGTGTACGCTGTATCAATAGC
AGTACTCTCTAGCGTATGAGCGCAGAGGTGGAGCTACTGGTAGTTAATGA
ACCAGTGAAAGAGTCCCTTGATCGTGTGTTGAGTTGTTGTTATTGTTGTT
TTCTTCACATAAAACCATTCACATCTCTCCACCCAGTTCTCTCCCTTGTC
CGTACTCATCACGCTAGACACGGTCAATTCCCGTGGTCATACGAGAAGCT
ACCCTCGAAAATAAACGAAAATGGATCCAGAGGTTCCGCAAAGCGATACA
ATTCAGACACAGACGGTTTGGAGCCCGACACGATATGTGGGGTACGAAAA
TTAATAACTAAATTGACAGTTTCGGACCCCAAAAAAAAATTATTTAAGGA
AATATATTTCCAGTTAAGCCATCGTTCCCAGGATCGTTCCCGACAGTCTC
GCCAGAACCCGAAATAAGGAAAAAATATTTCGATTCTAGAGCGGAGCGAG
GCTCGTTTTGCGGAAAATTTTGCCAAGAAAACTATTTAAGCAACTTTCTT
CGAAACAACACACCCACACCAGCCACCACCACCACAACAGACCCGCACGC
ACACACAGCAGTCTGCTACGAACATGTCCAGCACCCGCCCAAAGAGAAGG
CCAGCGCCCAGCGCAAAGGCCCTGGATCTGGCGCGCGACGAGGTTACCAG
GAGGGAGGTGGCACGGGCAGCCGGTCGGGTGGGCTTTGCGGCTCTAGGCC
AGCAGCACGCCCGAGACCTCGAGGCAGGGGGAGGAGAGGAGCAAGCGGCC
GGGCGAGGCGACGATGATGTCCAAGTCGTGGCAGCACCAGCAGCAAAGCA
GGCCAGGGTTAGGAAGAGCACGAAGTGGCCTCCTACTTACGACTTGGCGC
TGGCAAGGGCGGGTGAGTCTGTCCCCGCGCAAGGGTTATGTTCTGATTTT
CTAGAGAGAGGCGGTTTGGATGTGTTCCCTCCCCAAACCCCACCCCCATA
CGCTCCGAACGCGACACAGCACTGCAGGAGCAGCCGGCCACAGCAGTGGT
ATACGTACTTGCTGTCTCCGTACTGGTGCGATTTCCTGTGCTGGAGTTAG
TTGTTTCCTTTGCTGGGGTTGAGAGAGCGACCCATGTTCGCGCGCACACA
TGCACGCTGTTCTTGAACTGCTGTAAAAGAGACAGCCACTTCGAACCAGA
TTATTGATCCTTGGCAACGAGGGTGCAACGAGTGCACAACATATACGAAA
GATTCAATCGAATAGCAGCGGAGTAGGGTAGGAACACAAAGCTATATTCG
GTGTTCGTAGGGGAGATACAAGTCTTGCTTGGCGAAGAAGCTGATACTTT
CTTGCACTGGTTCCGACGTGGAAAAAATACACGTCACGTCACATGTGGCA
TCATGTTTAAAATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTCACTTGCGATTGCGTGAAACGTAGAAAGTTGACGCAGTCCTGTGGGCT
GAAGAATGCTGTCGCGTCCCTACGTGCGATACTCGTGGGCGTGTCGTCGA
GTTCCAGGCGGGCCATCGCGTAGATGAAAGCGATGTTGTACACGAACCAT
AGATCGGTGTAGACTTCGAATAGATTACGGCATCGAAGCATGACCGAAGC
ACGTTTTTTGCGCTCGATTCGTTCGCGAATACGTAGGCGGGACATGGTAG
CCTCGCCCACACACTCAACAGTGGGAGCGCTGCAGAGGGCTCTGTCAAGA
GACAGCTGTTCCCGCAGTAGGGCAGCAGGCAGCCAAGGAAGGAGGGGGAC
TGTCAGGCCTTTTGTCCCTCGGCCAATCACTTTCGCCCCAGTGTGCAGAC
CTTAAATCGGAAAGTATTCGCCTGCAGGAAGTTTCCCGGAAACTTTCTTA
TGTAGAAATCTGTTTCCTTATTTCGGAAAATTTTGAGGCCCGGTCCAAAA
CTGTGTAATATAGAAAAAAAAAACTGGAAAAGTCAAGACCACCAACCCGC
CCACTGATGAATACGTGAATGATGTCGCAGTACCGCCTTAGAATATATCT
GCCCCCATACTGTCGTCTCAGAAAATACCCACCCTCCCCTTTGCCTCCGT
CCCTGTCGTTCCTTCTGCCGACGATTGCGCCGCCATCGACGACATTTTCC
TTGACGTTAGCCTGCGTCACGGACGACGACTGCACCGTGCCCGACGAGAT
CTGCTGCCCGTCGTTGAAGCTCTGTGACGTGCCCCTTATCAGCGGCGCTT
GCCGTGAGTATTGAAAGCCACATCTGGGTATCGTGCCACGCACACCTGTT
CAGTTTTTTTGCCGAGCACACAGACAACACGCCGGACGCGATTAAATCGC
GATACGTTTCCCTTGTCGACGGCGTTCAGCCTGCAGAGAAGCGTGCCTGC
ACCCACCCGGCGCTACGGCCATAGCGACCATTTGCACCGCGAGCCTTTGC
CCTGAATCTGTCGACATTGATACCATTTCTTTCTTTCTGTGCTCGCGCTA
TTTGCCGAATTGCAGGGGATCCTATCCCCGCGCCCACGCCGGGTACCCCA
GCTCCAACTACGCCGGGCCCCATCACTCCAGGTAACGCCATGCCTTGGAT
TCCGCGGAAAGGAAAGGTGTTCCTGCATGGTTGGATCTTTGTAGCCTATT
GATTGAATATCCTCGGCCCAGCAGGCGTACAGGAACGTTCTCAGGAACGG
TACTATGTATATGTCCGTGATACTTGCAGGCACTGATTCATTAGTTTCAA
GGACAGTATTCGGACCACACGAAACGGTCCCCGGAACGTTCTCCGGACCG
TTCTTTGCGTTCTTGGTGTTTTCGTCGGTAGGACCGACGAACCCGCTTTG
GGACTTGACAGAGCGCACGCCCCCCCCCCCACAGGCTCACTCTGTCTCCT
GCCCTCAACAAAAAATAATGCAAAATTATTCAACATCTTCGTCTCAACTC
TCCATACAACCGAAGTATCTTCTTTGGTTAGCAGGCTTACACCTGCAGTT
CACCCTCTGCACAACAGTTTGAGTGTTTTGTTATTCTTGCTTGTACACAC
ATCTCAGGTGGCAGGACTGCTGTTTATGTTCAGTCTGTTTTCAGTCTATT
TTCAGCTTGTTTTCGTGTAAGAAGAATCTCCAACTCAAACGAAATAACAC
GACACTTGTACTTGACTGTCTAGTCAAGACAAACCATGAGCCACTGACAC
ACACACACGTCAGATTACAACAGACGTTTTCCATACTTCTGCGGTTCGTG
CCAAAGGGGAAGGAAAACCTACTGCGGCCGCAACGGCTACATTCCAACCC
AGCCTCCTTGCTCCCTGCTGATAGTTCGTATGCCAAGCGTTGGTCAAACA
GCGTGCGGGCTTATTCATTGGGCAGAAGACTCGTGTGCACGTGGGGCAAA
CACGGAGCAAGACGCGGTATATATATTTGAAATTTCCGTGCACGCTTTAA
TGTACATGGAGAGAGTGCCATCCACACCGCAGCAGCACAGAACCGGCAGT
GCACACCCAACACCACGACAGGTTGTCGGGCTGGGACAGCACACTCGATA
AACAGACGTGTTGTTCTACACTGGTGGATACAACGTTATGATACGGACAA
AATTCTGAAATTCTTGCACCATTTATACTGAGGTTTCGATTTGCCGTGCT
TTTTTCCACTACACGATACATATGCGATGCCGCAGCAGTGCCGCTCTTTC
CACAGGGCTTGCTGATGAATTCCTACATAAAAAGCTGCAATGTCAACTGA
CATAACCTTCTCCCGTTCTTGAAGCGCAGCGCTTCATAAACTAGTAAACT
AGACTGCTATGTGATCCATACCTGCAGCACTTCACTCTTTCATAACAGTC
AGTAGCCTTGGGTACCCGTGCCTTCTCAGAGAGTTCCGGAGAGCCGGATT
GCCTCGGAGTGGAACGATAGCTGCGACGAATCTTTAAAGCTGGTTTTCCT
CCACGTGCCCAAGACCGCTGGAGAAAGCGTGGAGGCTGCCCTGAAAATAA
AGAAGAAGCACGATGTCGCACGGGAAAGGAGGCAAAGCATGGGAGAAGAA
GCTTGGGGTTGTGCGTTCAAGTTTTCGGTCGCTCGCAATCCTTGGTCACG
GTGGGAAAGCTGGTACAGCTTCTGCAAGAGTGGTTATGGAAAGGAGCGCG
TGCTACCGTCGCCGCATTGGGGGTGCCTATTGGCCCGCTCGCTGACACTA
TCTTCGTGGACTAAGCACATGGTTGTGCTTCTTCGTGGTCTTGAAGCGCT
CCCTCCGGATATTAGGGGCAATCTCGAGAGGTGAGGTTTTTTGTCCGAAA
TCTTCAACTTTCGTCACGCCCAGTGGCGCAAGACGGGCGTGGTGGTGGAA
GCCTTAGCGGGAAGCGAGCGGTAAACTAGAGGAGTATTATCCAGAATTGG
CGCGGAACGAGGCAACTCATGAGAGTAAACTGTCAGGAGTGGACGGGAAT
ACGGACAGCGAGCAGGATCCCGGCTGATGCATTGCATGAAACATGTACCG
AAAACATCGTGCAAGATTTGTTGAAGCGTGATGTTCAATCGTGGTTTTAC
ACTATAACTCGACCTAGGGTTGCGGTTGGTGAGTTAGGGGAAGCGTGCAT
ATACTCTCAACAAATTACTGCGCGTTCAGAGATACTTCGCCACCTCGTCT
GCAGAAAGGGAGGGCCGTATTCTATCCAAAACGCGTGTGAACGACATCAA
CTTCATTCCGACGATTCGTTTATTACACAGTAGAAAAAGGTGTGAGAAAT
AACCAGGGGGGTCGATTGCGTTGTTGCGTCAACCAATCGCTGAAGATCAC
CAAATGAGTTGTTGCATACATCGATGGGGATCAGAGACATCAAATAATCC
GAACCTCTTGGAAACCTTACCGGCCGTGGCACAGGAATGATGGAGAGTTT
TCCAGGCCGTCGTGGTTCGGATCTCAGTCGGAGTACGTTACGGATGGTGT
TCACCTCGACGTGCTCCTGCCGAACTTTATTATATCATTTGAGAATCTCC
AAAGCGACTTCGAATGCATGGCTACTCTTCTGGGTCTTCCGGCGAAGCTT
GGACACAAGAATCCGAGCGTACTTGTCGAAGGTGGTATCTAGCCAACTGT
AAAGCTCTAGGTAGTTTGATTGAAACGCTCTCTGTCCTCTTTTTCGTAGT
GATTTTCTTCTCACCTGCATGAGACACTACGTATCGCTGCTGAAGCCCCA
TCCATGTAGTCTAGACCGAAAAAACCGAAGGCCACTGATTGCTGCTTCAT
GTATTTCTGAACAGCTGACTCCATGAATAGAAGAAAATGCGGTACGACGT
TGTCCCTCTCAAGTGTCTGCGTGCGCCAACACTTTGCAGAGTGCATACGC
CACCACCATCGGCCTCACAAGGCAACAACCCCTCTAGTGACTACATCGTG
CAGCTTCCCATCAACTCCCGTGGATATGTTTGAATCTTCTTGTTCCAATG
CTCCAATGCTTACAAACCCACGATGCAGGAACGTCTACCGCCGAGCGAAT
TGGAGCTTTTGACCAAGAGGCGCGTGATCTCATTGGCGAATATAACAGAT
TTGAAGTAGAGTTCTATGGGTACGAGTTCCCGGTGTAGTGGGACAGGTAC
TAGGCGGAGGCGTGAGCTCGGGAGTGGAGAAGGGCTCAGCCGATATCTTG
TTGGCTCTGCGCTGTGCGTAGATATACGGAGACTAGGCGCCTGGGTATGG
CTATTCCGGCTCACATGTCATGCCCATAGTCCGACGGTGTGTTGGAAGGG
GACATGTGTTGGTACTCGATGTGTGTGTGATGGATGGCATGTCACGCAAA
TAAGTAGCTAGGTAACACCCGAGAGAGGAGCCCGCTGGCGCTTCTCTCCT
GCGACGCGACGTGATACACGAACCTTCGGGGAATATCATTACCCGGACTA
CTGTACCTTTATCTCGTAAAGAGAAATTATTCTTGATACGGAGTATTGTT
TTTCGTTTGCCATCCGACAAGGTGGAGAGCCTCGATCGAAGCCATGTTCA
TCGCTCAACAAGAGTCGAACTCGAAGCTACGCATGAATGCATCACGTAGC
CGTGACATGTTTTTTTTTTTTTT back to topCoding sequence (CDS) from alignment at Scaffold_647:594771..605943+ >EsuBft1562_3a-0001 ID=EsuBft1562_3a-0001|Name=EsuBft1562_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_647:594771..605943+ (Ectocarpus subulatus male Bft15b) ATGATCTTCTTCTGGACCTTCATGTGTCTAAGCCTGGCGTCCGCCGTTGA TGGACCCCATGGAAGTACGGACATGCGAATCTCTACACCCCGCCCCCTAG ACCCCTGCGTCACGGACGACGACTGCACCGTGCCCGACGAGATCTGCTGC CCGTCGTTGAAGCTCTGTGACGTGCCCCTTATCAGCGGCGCTTGCCGGGA TCCTATCCCCGCGCCCACGCCGGGTACCCCAGCTCCAACTACGCCGGGCC CCATCACTCCAGAGAGTTCCGGAGAGCCGGATTGCCTCGGAGTGGAACGA TAG back to top
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