EsuBft154_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_9a-0001
Unique NameEsuBft154_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:597931..600635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft154_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length251
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_9aEsuBft154_9aEctocarpus subulatus male Bft15bgeneScaffold_340 597931..600635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_9a-0001EsuBft154_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 597931..598120 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_9a-0001-exonagat-exon-109587Ectocarpus subulatus male Bft15bexonScaffold_340 597931..597952 +
EsuBft154_9a-0001-exonEsuBft154_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 598071..600522 +
EsuBft154_9a-0001-exonagat-exon-109588Ectocarpus subulatus male Bft15bexonScaffold_340 600594..600635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_9a-0001-cdsEsuBft154_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 597931..597952 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_9a-0001-exonagat-three_prime_utr-4834Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 598121..600522 +
EsuBft154_9a-0001-exonagat-three_prime_utr-4835Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 600594..600635 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_9a-0001 ID=EsuBft154_9a-0001|Name=EsuBft154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2516bp|location=Sequence derived from alignment at Scaffold_340:597931..600635+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGACGCTCACCACTAGGCATGGCGGAGGGACTCGAGAGAGGCCG
GCAGAATGAGAGTCTCCAATAGAGAGTGGGGTTGTTGGATAAACCGGGTA
GGCCGAAGCTTGTAGGTTTGTGGAGAAAGGCAGTTCGGCCAGTGAGGGCC
GAGATGGGAAAGTCTTGTATTAGAGGAAAGAGGGAAGGGCAGAGACCACT
CCAGGTCGAGCAGCCGAAGAGTAGGGCGTCACCACACCTATCCGTCACGC
AATTCAGATCACTCATCGAATCTCCGAAGAAACCAAGCAGAAACTCCCTG
TTCCTCCGCGATCTACCAACTGCAATCTCCGTAGATCCATGTCCCATACT
CAACCACATTACTATGCTACGAGTATATCTAACAGCCCCCCTGCTCGTAT
GCATCGTAATGATACGGCAAGGCAACATAAATCCACTTACGAACCAAAAC
GTCGTTCCTATTCGTCCGTGACAAACAATGAACCAAAAACTCGATTATGC
AAATATTCCTGAACCAAAAACGTCTCTTAGCACACTGCATCCTTCAACTC
AGAAAACGCTTTGCTATTGGTCCATCTGCTCTCTCTGCATCTCGTCGCAT
TTGTATTCGCCATACATTTCATCCCTTACGTCTCAAAAGCATTAAACAAC
CCATTCATGTTAACATAATTATGGAAGAACTCTTCCATCATTCTTTTCCA
AAACAATGATCAATCCTGGATAATCGCCTTCGAAATACTGCAGATGCATA
CAGTCATCCCCAAATCCTACATGAATACCAAGACAACATGAATTTCGCAA
GGGATAAAATATGCATGTTTGATGCTTCCGAACACACAGAATGTACCCAG
TTCGCAGATAAAACGCGACCAGGAACGAATGCTACTCTCACAATTCCGAT
CAAACAATATCCCCAAAACATTCGGTCAACGTCAAGACAACTTCCGCAGG
TGAAACGCGAATATTTCTTGATTGTAACACTCCAGAAACCAAACATCAGC
TTTCCGTTCCTCCTCCTGAAAGGATAGTGTGCCCCTCTTCTCGGGGGGAT
CTGCCCCCCTGATTTGAGAAGGGGTTGGAGTCAGAAACACAGACCAAAAT
AACACATTCAAAGTCCATCCAGTCGAAAGCTCAAGAAAAAACAATATTTA
TGCAAATCCGAAAAGCTAATACCAAAACCAAATCAAAATCCATTACCAAA
CAGTTCCAGTCCGAAAGTCCAGACCAAATCAAAAACCAAAACCAAAATCC
AATACCAAAACAAAGACAACATCAACACAAAATCCAATCTAATACCAAAA
CAAAACAATACTCGAAACCCCTACATTTGCCGGCGCATCATCAAGCTCCA
GCGCTTAATAACCCATTGCCCAAGCCATTGTTTTCCCCCCCGCGGACAAT
TCGCACGCCTCCGCCGCGGTCGCCTTCCGCCATCTTTTCCGGCTGGCCGC
GGCTCGAGCTTCGATGTTTGCGTCCGCCTGACTTGGGGGAAGAACAATTG
TCGCTCCGAGAGGATTGACTCGGCAGTGGTGCAGGGCAGGTCGCGCGTTC
GGAGGGGATGATGGCGGCAGATTAGTTCCGAACAAACCAGCACTACTGAG
GAGAATCACAAACATACAAACATTCCCCCCGGTTCTGCAAAGTAGTGACT
GCATGCAGCAGAAAAAACAATAAATGAAACACACGTTCAAGTCGTCGGAC
CCTACTTGTGGAATGGTTTGTCTGAAATTCATTGCCGATGCGATATCGCC
ACACCATAAATAGCTGAATATCATCCTGAAACGGAGGTTGATTAGTCCTC
TGTTGCAAAATAGTAATCAAGCTGCTGCTACTGTTCTAACCATAGGGTAA
TCAATCCTAAGTCAAAACCTTAACAACTTTTGGAACCGCAATCTCACAAC
AAATAGCAATCTCAAGACAACGTACAACAATATTAGGAAATCAGCATTTA
TTTCGTCAATATTGTGAATTTTTAATCTGCAACAAGGTGGAGGTACCAAT
GTTGCACTTCGTTGAGACTTGACACGTCTCCGGCACTCGCTGACACAACC
AAGACATGAAAAGTTTTTGATCAGGTTAAACCTGCTACCCAAAAAGAGTC
CAGATAAAACGTTGATCACGCATTTTTGATCAGGCTAAACCTGCTGCTCA
ATAAGTAGCTACCAAAAAGAGCCCAGATAAAACGTTGATCACGCTATTGC
CGGGGAGAGAAAGTTGGTCTCAGCACGGCTGTCAGGATGACAAAGCAAAA
ACCTCGCCGATCACTGCATTTCATTACGCACAATACTATTTCTAATTCCA
TGCTACACGCACACATCATATCATCAGTTTAGAAACTGGCATCAGTTTTT
GAGGATTACTGGTAACCTGCATTAATTGTGTCTACCCGTTATGCTACAGG
TAGTCGGCCTTCTTTGGCCGAGCGTTTGACGGCGGTACCGCGCGACGATG
TCGCGATTTTGATTGAGTCTACCGCGTTGGCGTTTGACGGCAGTACCGCA
CGGCGTATTGCCGCGT
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protein sequence of EsuBft154_9a-0001

>EsuBft154_9 ID=EsuBft154_9|Name=EsuBft154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=23bp
MNGRSPLGMAEGLERGRQNESLQ
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mRNA from alignment at Scaffold_340:597931..600635+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_9a-0001 ID=EsuBft154_9a-0001|Name=EsuBft154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2705bp|location=Sequence derived from alignment at Scaffold_340:597931..600635+ (Ectocarpus subulatus male Bft15b)
ATGAACGGACGCTCACCACTAGGTATGCACGAACGCCGTCCTTCCCCCGT
AGGATACTCTCATGCAGATGCGTGTCAAAGGTTCAGTATCATTTTCGGCG
ATTCCTCGATATCAGAATGGAATAGTAGAAATCCTCCCAGGCATGGCGGA
GGGACTCGAGAGAGGCCGGCAGAATGAGAGTCTCCAATAGAGAGTGGGGT
TGTTGGATAAACCGGGTAGGCCGAAGCTTGTAGGTTTGTGGAGAAAGGCA
GTTCGGCCAGTGAGGGCCGAGATGGGAAAGTCTTGTATTAGAGGAAAGAG
GGAAGGGCAGAGACCACTCCAGGTCGAGCAGCCGAAGAGTAGGGCGTCAC
CACACCTATCCGTCACGCAATTCAGATCACTCATCGAATCTCCGAAGAAA
CCAAGCAGAAACTCCCTGTTCCTCCGCGATCTACCAACTGCAATCTCCGT
AGATCCATGTCCCATACTCAACCACATTACTATGCTACGAGTATATCTAA
CAGCCCCCCTGCTCGTATGCATCGTAATGATACGGCAAGGCAACATAAAT
CCACTTACGAACCAAAACGTCGTTCCTATTCGTCCGTGACAAACAATGAA
CCAAAAACTCGATTATGCAAATATTCCTGAACCAAAAACGTCTCTTAGCA
CACTGCATCCTTCAACTCAGAAAACGCTTTGCTATTGGTCCATCTGCTCT
CTCTGCATCTCGTCGCATTTGTATTCGCCATACATTTCATCCCTTACGTC
TCAAAAGCATTAAACAACCCATTCATGTTAACATAATTATGGAAGAACTC
TTCCATCATTCTTTTCCAAAACAATGATCAATCCTGGATAATCGCCTTCG
AAATACTGCAGATGCATACAGTCATCCCCAAATCCTACATGAATACCAAG
ACAACATGAATTTCGCAAGGGATAAAATATGCATGTTTGATGCTTCCGAA
CACACAGAATGTACCCAGTTCGCAGATAAAACGCGACCAGGAACGAATGC
TACTCTCACAATTCCGATCAAACAATATCCCCAAAACATTCGGTCAACGT
CAAGACAACTTCCGCAGGTGAAACGCGAATATTTCTTGATTGTAACACTC
CAGAAACCAAACATCAGCTTTCCGTTCCTCCTCCTGAAAGGATAGTGTGC
CCCTCTTCTCGGGGGGATCTGCCCCCCTGATTTGAGAAGGGGTTGGAGTC
AGAAACACAGACCAAAATAACACATTCAAAGTCCATCCAGTCGAAAGCTC
AAGAAAAAACAATATTTATGCAAATCCGAAAAGCTAATACCAAAACCAAA
TCAAAATCCATTACCAAACAGTTCCAGTCCGAAAGTCCAGACCAAATCAA
AAACCAAAACCAAAATCCAATACCAAAACAAAGACAACATCAACACAAAA
TCCAATCTAATACCAAAACAAAACAATACTCGAAACCCCTACATTTGCCG
GCGCATCATCAAGCTCCAGCGCTTAATAACCCATTGCCCAAGCCATTGTT
TTCCCCCCCGCGGACAATTCGCACGCCTCCGCCGCGGTCGCCTTCCGCCA
TCTTTTCCGGCTGGCCGCGGCTCGAGCTTCGATGTTTGCGTCCGCCTGAC
TTGGGGGAAGAACAATTGTCGCTCCGAGAGGATTGACTCGGCAGTGGTGC
AGGGCAGGTCGCGCGTTCGGAGGGGATGATGGCGGCAGATTAGTTCCGAA
CAAACCAGCACTACTGAGGAGAATCACAAACATACAAACATTCCCCCCGG
TTCTGCAAAGTAGTGACTGCATGCAGCAGAAAAAACAATAAATGAAACAC
ACGTTCAAGTCGTCGGACCCTACTTGTGGAATGGTTTGTCTGAAATTCAT
TGCCGATGCGATATCGCCACACCATAAATAGCTGAATATCATCCTGAAAC
GGAGGTTGATTAGTCCTCTGTTGCAAAATAGTAATCAAGCTGCTGCTACT
GTTCTAACCATAGGGTAATCAATCCTAAGTCAAAACCTTAACAACTTTTG
GAACCGCAATCTCACAACAAATAGCAATCTCAAGACAACGTACAACAATA
TTAGGAAATCAGCATTTATTTCGTCAATATTGTGAATTTTTAATCTGCAA
CAAGGTGGAGGTACCAATGTTGCACTTCGTTGAGACTTGACACGTCTCCG
GCACTCGCTGACACAACCAAGACATGAAAAGTTTTTGATCAGGTTAAACC
TGCTACCCAAAAAGAGTCCAGATAAAACGTTGATCACGCATTTTTGATCA
GGCTAAACCTGCTGCTCAATAAGTAGCTACCAAAAAGAGCCCAGATAAAA
CGTTGATCACGCTATTGCCGGGGAGAGAAAGTTGGTCTCAGCACGGCTGT
CAGGATGACAAAGCAAAAACCTCGCCGATCACTGCATTTCATTACGCACA
ATACTATTTCTAATTCCATGCTACACGCACACATCATATCATCAGTTTAG
AAACTGGCATCAGTTTTTGAGGATTACTGGTAACCTGCATTAATTGTGTC
TACCCGTTATGCTACAGGTAGTCGGCCTTCTTTGGCCGAGCGTTTGACGG
CGGTACCGCGCGACGATGTCGCGATTTTGATTGAGTCTACCGGTAATAGG
TAGTCGACCTTCTTGGCCGAGAGGTGGCGGTGGAGAATGAGGTGGAGTTG
GAGGTTGCGTTAGCGTTGGCGTTTGACGGCAGTACCGCACGGCGTATTGC
CGCGT
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Coding sequence (CDS) from alignment at Scaffold_340:597931..600635+

>EsuBft154_9a-0001 ID=EsuBft154_9a-0001|Name=EsuBft154_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=72bp|location=Sequence derived from alignment at Scaffold_340:597931..600635+ (Ectocarpus subulatus male Bft15b)
ATGAACGGACGCTCACCACTAGGCATGGCGGAGGGACTCGAGAGAGGCCG
GCAGAATGAGAGTCTCCAATAG
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