EsuBft154_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_8a-0001
Unique NameEsuBft154_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:604913..607714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft154_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length129
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004000.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_8aEsuBft154_8aEctocarpus subulatus male Bft15bgeneScaffold_340 604913..607714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_8a-0001EsuBft154_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 605904..607690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_8a-0001-exonagat-exon-109586Ectocarpus subulatus male Bft15bexonScaffold_340 604913..606029 -
EsuBft154_8a-0001-exonEsuBft154_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 606331..606411 -
EsuBft154_8a-0001-exonagat-exon-109585Ectocarpus subulatus male Bft15bexonScaffold_340 607619..607714 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_8a-0001-exonagat-three_prime_utr-4833Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 604913..605903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_8a-0001-cdsEsuBft154_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 605904..606029 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_8a-0001-exonagat-five_prime_utr-3137Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 607691..607714 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_8a-0001 ID=EsuBft154_8a-0001|Name=EsuBft154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1294bp|location=Sequence derived from alignment at Scaffold_340:604913..607714- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCTTGCTAGCGCTCTACAAGACTATGGCGAGCGGCTTCGGGAAAAACAA
GGTCGGGAGGTGCTACTCGATATTCTCTGTTTTCGAAACATGCATGAACA
CGGAGCCCGACTCCTCGGTATGCTACGACTTCCGCAAGCAGTACTTCAAC
TGCTTACACTTGCCAACCGTTAACACGATGTCCGAAAAGCAGATGGATTT
CATGGAGGAGCGCAAAGACACCCTCGTCCTGGCGTCGAAGGCTCTCCAAT
CCGGGGCAAGCGGTAGTGCGCCAGCTAAACCACCGGGAGAAGAATCAACA
TAGCGCCGCCTTACGTCCGACAATAGTTATTCGTAGAGTACCTTAAGAGG
CGCAGACATGGCATCGAGTTTTCAAAGCTCGATTTTTCTCCGCAAGCAAC
GGGGGTGCGAAAGAGCCCGATCGAAGCCCCCTCGACGAGATGTTCCTACA
ACCACAATTTTCGGTGTTGGCAAAATCTTCAGTGGTCGAGCAATCGAGCT
CTTTGAAAACCGGTCTAGGGGAGGGTGCCATATCTCCGCCTCTTCACGGT
ACTACTGACCAGGAAAGGGGGGGCAGCGGCAGAGGAGGGGGTTGGTGCTT
CTTGTCAGGGTTTTTTTATGGTCCCCTCAGTGGCTCGCCGGAGTGCCAAT
GGGGTGCATGGATCGAGCGGGATTTTCGTTCAATGCGGTGTGTTGATTCT
TCCCACGGCTTTGGGATGGTCGGCTTACACAGATCGCATTGGTTTACGTG
ATGAGTGAGCTTTCGTTCAAAGGATGGAGGCGTGTCTGGCGCTCCGTTTG
GGCCTGCGGAGCGCAACTCATACGGCCAAGAGATGACCTGCTTTCAGGTA
GTTTGAGCACGTCGCAAGCTGGCAAACGTGTTACTTCTACAAATAGTGGT
TGTTTTTTTCCCTTCCGATGGACGCTTTGAAGACTGTCGTACTGCCGTGT
CGAATGGCTTTCACGTCGCTACTTGTTTAGCTTCTTGCTGAACAACATCA
TCGATGACGGGATGATGCGGACGTTAAAACATTTCTGTGGAGGTATGGAG
TTCCGGGCTCGTAGGTGTGCTGTTCGATCGACCGCGTCGCACGTACCGAG
CACGGGATCCAAATCGCTGTCGGCATGACGCAGTCGCTCCTAGTCACTCT
TGACCAAGCGGTGGTGTGTTGCGAGCTCAGGTGCTGGATGGCATATATAT
GCACACCCAGATACCGCGCCCCACCGGGTCGAGCCGCGGTTTCGAGGGCA
CCAATGAGCCGTCTCACGCCCAGCACGTTGTACCAGCCATACCC
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protein sequence of EsuBft154_8a-0001

>EsuBft154_8 ID=EsuBft154_8|Name=EsuBft154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=92bp
MASGFGKNKVGRCYSIFSVFETCMNTEPDSSVCYDFRKQYFNCLHLPTVN
TMSEKQMDFMEERKDTLVLASKALQSGASGSAPAKPPGEEST
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mRNA from alignment at Scaffold_340:604913..607714-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_8a-0001 ID=EsuBft154_8a-0001|Name=EsuBft154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2802bp|location=Sequence derived from alignment at Scaffold_340:604913..607714- (Ectocarpus subulatus male Bft15b)
GCCTTGCTAGCGCTCTACAAGACTATGGCGAGCGGCTTCGGGAAAAACAA
GGTCGGGAGGTGCTACTCGATATTCTCTGTTTTCGAAACATGCATGGTGA
GTGCCTTCTGTGAGCTGAATGTCGACCGAAACTCAGAGCGTGTTTTGCTT
GGTTTTTGCCCGTCACTGCAGCGGGCGTGCTGTATGTTTCCAACGATGGG
ATGAGCTGTAGCAGCATTGCACCGTTGCATCTGACACTTGACGTGATGGC
TGTCGTAGCGAGGACGTCTGGCCAGCGCGAAAAGTACGAACGGCAGATCC
ATTGCTCTGATAGCCCCCGACTCTCTATGAGCGGGCCTTTTGCCGACCCT
CCTGTGACATGCTTCCAGAGCTGCCCAGCCGCTGTCGAGGGTTAATGCGA
CAAGCAAACGAGTCAAGCAGGGGTCTAGTGATGAAGTGAGGTTGCACGGA
CACAAAATGGGGCCGCCACAAAGAGTACTGGCTGTGGTGGCTTATTCTCT
GATGCTTTTTGCAGTAACGATCGCGAGTTGACTTTGGGGCATTGGGAGCA
CAAGAGACATGCCGCTGGTGTGCTCGATCATGTGTGCACTTGGGCGAGCA
GTCTTGTTTAGCCGTATGCTACGCATTCATATACTCGTATTCATGTCCTT
GGGAATGCATCCCGGCTTATTGGGGGCAAATTGTGCACTCACGAGGTCTT
CGTAGGCCACGCGATCGGTGTCAATGAATCTCCTTGCAGAAACTCTGCTC
TGGTTGCTTCGGAAGCGTTTGGTCGTTTGCTCGTGTGTTCGTTTACAGTC
GTGGCTCCAATACAGAAGGGTGGTGTGACAAAGGCCCTCGACGCTCTTAC
ATCGGAGCCCGCTCTGGTACCGGATCAATAGGTACCACTCAACTACCAAG
CAGTAGAGGGTAACTAACCGATCTTTCCCCTCTTAAGTTGGAGCCCCCTT
TTGTGAGGAACCCTCTTTACATCGTGGCCATGACTGTACTCCGGTAGAAG
AGCTCTCCTTCGGTGGTCACCACCTCCGACTGCTGCGCAGCCACAAGCAG
CCAGAAGCAGCACAGCAGTGCCGTGAAATCTTGTACTGCTTTAACGGCTA
AATGTAAGCCAGGTGTTCCTTGAGGCTGGACAAACCGAAACACGCGGAAC
AATTTGTCTCTCGTTGGAAACGTATTGTCAACTGTGAGCCTGCCGGAAAA
GTATTCCGGACAAACATCTTCCCCCGCGCTGTCATGCCGGCCAATTGCCA
TCTTGCTGATGATGTATTCCCCGTCCGGCCTAACCTCGCTTTTGTGTCCG
CAGAACACGGAGCCCGACTCCTCGGTATGCTACGACTTCCGCAAGCAGTA
CTTCAACTGCTTACACTTGCCAACCGTTAACACGGTAAGAGGCGTGTATG
AACCGTGGTGTTGAGGACGTTGTAGATTATAGTGGTTTGTGTTGTAAATA
GATGCTTTTGGTTGTTGGCCGTGCTTCGTTCTTCCTTCATTCTTCAACTA
TAGAACACGCCGTCCAACGTGTCCTTGTTTCTTGTTCATGAAAAACTGCG
CGTGACCAAGGCTGTATCGTCACATGTTGGCGTTGTTCGCTCTCGGTTTT
TTCGTACAGCATCTTGAGCGGGTGCTGAGAAACACTTACATCCTCTCTAT
TTGTTGGTTGCGCTCCCTCTGTGCGTTTTCATTAGATGTCCGAAAAGCAG
ATGGATTTCATGGAGGAGCGCAAAGACACCCTCGTCCTGGCGTCGAAGGC
TCTCCAATCCGGGGCAAGCGGTAGTGCGCCAGCTAAACCACCGGGAGAAG
AATCAACATAGCGCCGCCTTACGTCCGACAATAGTTATTCGTAGAGTACC
TTAAGAGGCGCAGACATGGCATCGAGTTTTCAAAGCTCGATTTTTCTCCG
CAAGCAACGGGGGTGCGAAAGAGCCCGATCGAAGCCCCCTCGACGAGATG
TTCCTACAACCACAATTTTCGGTGTTGGCAAAATCTTCAGTGGTCGAGCA
ATCGAGCTCTTTGAAAACCGGTCTAGGGGAGGGTGCCATATCTCCGCCTC
TTCACGGTACTACTGACCAGGAAAGGGGGGGCAGCGGCAGAGGAGGGGGT
TGGTGCTTCTTGTCAGGGTTTTTTTATGGTCCCCTCAGTGGCTCGCCGGA
GTGCCAATGGGGTGCATGGATCGAGCGGGATTTTCGTTCAATGCGGTGTG
TTGATTCTTCCCACGGCTTTGGGATGGTCGGCTTACACAGATCGCATTGG
TTTACGTGATGAGTGAGCTTTCGTTCAAAGGATGGAGGCGTGTCTGGCGC
TCCGTTTGGGCCTGCGGAGCGCAACTCATACGGCCAAGAGATGACCTGCT
TTCAGGTAGTTTGAGCACGTCGCAAGCTGGCAAACGTGTTACTTCTACAA
ATAGTGGTTGTTTTTTTCCCTTCCGATGGACGCTTTGAAGACTGTCGTAC
TGCCGTGTCGAATGGCTTTCACGTCGCTACTTGTTTAGCTTCTTGCTGAA
CAACATCATCGATGACGGGATGATGCGGACGTTAAAACATTTCTGTGGAG
GTATGGAGTTCCGGGCTCGTAGGTGTGCTGTTCGATCGACCGCGTCGCAC
GTACCGAGCACGGGATCCAAATCGCTGTCGGCATGACGCAGTCGCTCCTA
GTCACTCTTGACCAAGCGGTGGTGTGTTGCGAGCTCAGGTGCTGGATGGC
ATATATATGCACACCCAGATACCGCGCCCCACCGGGTCGAGCCGCGGTTT
CGAGGGCACCAATGAGCCGTCTCACGCCCAGCACGTTGTACCAGCCATAC
CC
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Coding sequence (CDS) from alignment at Scaffold_340:604913..607714-

>EsuBft154_8a-0001 ID=EsuBft154_8a-0001|Name=EsuBft154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=279bp|location=Sequence derived from alignment at Scaffold_340:604913..607714- (Ectocarpus subulatus male Bft15b)
ATGGCGAGCGGCTTCGGGAAAAACAAGGTCGGGAGGTGCTACTCGATATT
CTCTGTTTTCGAAACATGCATGAACACGGAGCCCGACTCCTCGGTATGCT
ACGACTTCCGCAAGCAGTACTTCAACTGCTTACACTTGCCAACCGTTAAC
ACGATGTCCGAAAAGCAGATGGATTTCATGGAGGAGCGCAAAGACACCCT
CGTCCTGGCGTCGAAGGCTCTCCAATCCGGGGCAAGCGGTAGTGCGCCAG
CTAAACCACCGGGAGAAGAATCAACATAG
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