EsuBft154_36a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_36a-0001
Unique NameEsuBft154_36a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:344172..344714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft154_36
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length24
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_36aEsuBft154_36aEctocarpus subulatus male Bft15bgeneScaffold_340 344172..344714 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_36a-0001-exonagat-exon-109715Ectocarpus subulatus male Bft15bexonScaffold_340 344172..344390 -
EsuBft154_36a-0001-exonEsuBft154_36a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 344687..344714 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_36a-0001-exonagat-three_prime_utr-4827Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 344172..344343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_36a-0001-cdsEsuBft154_36a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 344344..344390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_36a-0001EsuBft154_36Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 344344..344714 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_36a-0001 ID=EsuBft154_36a-0001|Name=EsuBft154_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=247bp|location=Sequence derived from alignment at Scaffold_340:344172..344714- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGTGCGCTGCATCCTTGTGAGGGGGGNCGCCATCAGAAAGGTGG
ACGGGCACTATGTACACGGCCCTAGGTTTGCTAGAGGGAGCTGTACTGTC
TCAGTATCCTAGTTTTGCCATCAAAGGAGGGGACAGACAGGTGGTGACGA
GCTGAGTGGGCTGGTTGACCCTTCGGCGCGACAATTTTCAGACCAAGAAC
CCTAAGTGCAACGAGGGAACAAGCGAGGAACCGACTGGGAAGGACAG
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protein sequence of EsuBft154_36a-0001

>EsuBft154_36 ID=EsuBft154_36|Name=EsuBft154_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=24bp
MKGALHPCEGGRHQKGGRALCTRP
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mRNA from alignment at Scaffold_340:344172..344714-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_36a-0001 ID=EsuBft154_36a-0001|Name=EsuBft154_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=543bp|location=Sequence derived from alignment at Scaffold_340:344172..344714- (Ectocarpus subulatus male Bft15b)
ATGAAGGGTGCGCTGCATCCTTGTGAGGGTTTTCGGCATCTTGTGCTTAC
TTCGGTGCGTACGGATGACAGCTGCGTAGACTATGACTTAATTAATTTTC
TGGTGCTTCCACTTGCTGAGACAGTTGTAAGCACTGTGTAACAGCCTCGA
GGATGCTTTGCCATTTTAACACAACGGGTTGCGATCATCCCCCTTGCGCG
GAGTGAGGATTCTCGACCCCACACAACATGATCTACTCGACTACACAACA
CCGGGGGGCGGGCGGCTTGTGTTACAACGTCGTTGCCAAGCGACGAAAAC
CCAACCCCGATGGCAAACACCGAGGGGGNCGCCATCAGAAAGGTGGACGG
GCACTATGTACACGGCCCTAGGTTTGCTAGAGGGAGCTGTACTGTCTCAG
TATCCTAGTTTTGCCATCAAAGGAGGGGACAGACAGGTGGTGACGAGCTG
AGTGGGCTGGTTGACCCTTCGGCGCGACAATTTTCAGACCAAGAACCCTA
AGTGCAACGAGGGAACAAGCGAGGAACCGACTGGGAAGGACAG
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Coding sequence (CDS) from alignment at Scaffold_340:344172..344714-

>EsuBft154_36a-0001 ID=EsuBft154_36a-0001|Name=EsuBft154_36a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=75bp|location=Sequence derived from alignment at Scaffold_340:344172..344714- (Ectocarpus subulatus male Bft15b)
ATGAAGGGTGCGCTGCATCCTTGTGAGGGGGGNCGCCATCAGAAAGGTGG
ACGGGCACTATGTACACGGCCCTAG
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