EsuBft154_28a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_28a-0001
Unique NameEsuBft154_28a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:414071..417071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft154_28
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length171
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003840.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_28aEsuBft154_28aEctocarpus subulatus male Bft15bgeneScaffold_340 414071..417071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_28a-0001-exonEsuBft154_28a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 414071..415238 -
EsuBft154_28a-0001-exonagat-exon-109680Ectocarpus subulatus male Bft15bexonScaffold_340 416522..417071 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_28a-0001-exonagat-three_prime_utr-4815Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 414071..415175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_28a-0001-cdsEsuBft154_28a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 415176..415238 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_28a-0001-exonagat-five_prime_utr-3123Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 416936..417071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_28a-0001EsuBft154_28Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 415176..416935 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_28a-0001 ID=EsuBft154_28a-0001|Name=EsuBft154_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1718bp|location=Sequence derived from alignment at Scaffold_340:414071..417071- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGCGCAGGCGTGCCGTGGCTGGTGTAGACGGTGGGGTCGGACTGCAGA
CACAGCCAGCTTCACATAGTACGCACATCTCTATACGCCACCACCGTGTC
GTAAAGTGTCTTAAGTCCTAAGAGCCGGGTTCGGTCATGAAGTACAGCAT
CGTTGCTTGGTTTGTCTGGTATACCGCTGCGGATGCTTTGTTTGCCACCG
CACCGATCGGCAGCAGCGCGGGCGCCTCACACCGAGGGAGAATACATCGG
CATTTATCGGCAGCAACGCTGCTAGCGTTGCCGAGGCGCAGCGATGCCGG
GCAGGGAATGGGTACCCGAAGGCTCTGCGCTGCCGACAGCATCCACAGGA
GCTACCCGATGATGCGCGGCGTTGCTGACGACCATCAAGAACTGGTACTG
AGAGAGTTTGCCCTGCCTCTGCAAGCTAGCCCAGGGTCGTACGAGAGACG
GGTTAGGGCGGAGTGTTTGCGGGAGGGAGGGGAGACGGCTACAGTCGTTC
GGTGGCACATTAGCCACGCGGACGAAGCGACAGGCCGTGCTCATGTAGAG
GCTGTATTCCTCCTTGCCGCAAGTGTATCGGTAGACAAGATCACAATTGC
CGAAGCGCCATGATACAGCTTGGTGCTCGACCTTGAAGCTTTTGGAGAAA
TTGATTTACCGAAGGGGTGCATGCAGACCGCGTTGGTTCGACGTTTGCTG
TGGCAACCTGAGAGCGACGGGAGCGCTGCTGTACGGCACTGCCGCTGGTG
CTAGCCTTTTGACTTGGGGCTACAACAGCAGTATCTGCATTCTCCGGAAG
TTGTTGAGCATGGGAATGTAGCGAGTTCGTCGTTGCTGCGATAAAGAGGG
GTGGCGCGCGCCACGGCTAACGGATAGTACCACAGTATCTGCGGCACCAC
AACAGATTATCCCTCTGGATTGGACCCTGAGGACCCATGGCGGGCTGGAA
AGGTACAAGTTTGGTGCATACCTAAACCTGACGCCACATCGTTGTTTTTT
GAAACACTCAAGGAAAAATTCCAGCTTCTTAAAGCTAGGTTTGCGAATAT
GGGAACGGGTACCCTGAAAAAGAGGCGGAAAATTTATTCTACACGAGAGT
ATCCCGCCGAAGACAGACAGACCCTTGCAGTGCAGGGAAAGGGGAGTAAC
AAAGAGGTACACGAAGAGATAAACGATTGCAGGCGCACCATTTATCTAAA
TGCCGTTTGTTTTGCTTTGCTTTTTGTGCATTGCCGACATCGAGCGCCGT
GTCGGTGCTCCCAAAATGAAGACATTGCAGTTTTGATTAGGGGATGACGG
GTGTCATCGCGTCTCGCTTCGTGCTTCGCAAATACCTTCCCAAAAGAGTT
GTGTGTGGTGAATGACGTGCGAGTTTTGGGGTGACGAGACAGATATGCCT
CGCGTCACTGGTGCATCGTGTAGCATACATGCTTCAACTAGTCTCGTGCT
GATCGTGTCCTGTTGCGCCGCCACGCCCTCACCTAGGAACGTTGGGCCTC
GCACAATGACATTCTGCTGTAGACCAACCTTGAAGTGATTTTATTTCTTC
TCTTGGGCTGCTCTGTTGAGGCAACAATAGGGTGTGCTGTGCGGTTTTTG
GAAGCTGTCGAGACTGCAATCCAACGCGTATCATTGGTATCTGCTGTGCG
ACGCAGGAGGTCGACTCGACTTGTGCTCACGGTTGACTTGGTGGTGCAAG
CACTTGTAGCTTTGCCAA
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protein sequence of EsuBft154_28a-0001

>EsuBft154_28 ID=EsuBft154_28|Name=EsuBft154_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=158bp
MKYSIVAWFVWYTAADALFATAPIGSSAGASHRGRIHRHLSAATLLALPR
RSDAGQGMGTRRLCAADSIHRSYPMMRGVADDHQELVLREFALPLQASPG
SYERRVRAECLREGGETATVVRWHISHADEATGRAHVEAVFLLAASVSVD
KITIAEAP
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mRNA from alignment at Scaffold_340:414071..417071-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_28a-0001 ID=EsuBft154_28a-0001|Name=EsuBft154_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3001bp|location=Sequence derived from alignment at Scaffold_340:414071..417071- (Ectocarpus subulatus male Bft15b)
GTCGCGCAGGCGTGCCGTGGCTGGTGTAGACGGTGGGGTCGGACTGCAGA
CACAGCCAGCTTCACATAGTACGCACATCTCTATACGCCACCACCGTGTC
GTAAAGTGTCTTAAGTCCTAAGAGCCGGGTTCGGTCATGAAGTACAGCAT
CGTTGCTTGGTTTGTCTGGTATACCGCTGCGGATGCTTTGTTTGCCACCG
CACCGATCGGCAGCAGCGCGGGCGCCTCACACCGAGGGAGAATACATCGG
CATTTATCGGCAGCAACGCTGCTAGCGTTGCCGAGGCGCAGCGATGCCGG
GCAGGGAATGGGTACCCGAAGGCTCTGCGCTGCCGACAGCATCCACAGGA
GCTACCCGATGATGCGCGGCGTTGCTGACGACCATCAAGAACTGGTACTG
AGAGAGTTTGCCCTGCCTCTGCAAGCTAGCCCAGGGTCGTACGAGAGACG
GGTTAGGGCGGAGTGTTTGCGGGAGGGAGGGGAGACGGCTACAGTCGTTC
GGTGGCACATTAGCCACGCGGACGAAGCGACAGGCCGTGCTCATGTAGAG
GTGAGGGGGGTGAGGGAGAATTGTGCTTGTTTGTTTGGCTGCAATCAACT
TGGCGGAGGCCGAGTTTGATGATGGATCATGAAACAGAGGACCTCGTACC
AATCATGGTCGCTCTGCTGCTGTGACTGCTGTGTAGCAATCATGTGTCGC
TCTGCTGCTGTACGTAACTGCTGTACGCTGCTGTAGAAGTGCATATGTAA
CCACCAAACAGTTTTGTTGCATCACTTCTACACGGCGTACCAAGTGGCCT
GTAAGCAGACGGCTACAAAGCAATGCAGTATGCGCAGTTGGCAGCCCTGA
GCGACCAGGTGCATCCTTTGCCTGAAACGAGGCAATGGATACCATCTACA
TACTGTCTACGCCGTCAAACGCCACATGCAAGAGTGCCCAACGGGTCGTT
GCGTCTACGTAGTCCCCTGCTTGTCCGTGGCACCGTCCGCAGCCCGCGGC
CGCGATGGCAACGATGCTCGAATTAGAGAAATTGGCATCCTTGCCAGTGA
TGGGGTTTCGCGTGGCACCCCAAAAACTCCTGCAAATCAGTTTGCCGACA
GCAGCATCCTGCCACACATGTGATGTACCGGTCGGTGCCTGACAATTACA
TCCTTTCCATCTCAATCGCGTGAACAACTCTTGCCCAAATTTTGGTCAGT
GGCCGCATTTTGAAAGTGGTGACTTGTCGAATCCTCCTGGTGGTTAGGTC
GAGAGTTGAGTCCGAAAGAAACAACACTGCCGTAGAAACGTTCGGTGGCG
GATACGCTATGTCAGTGGAGGGCAGGACCTGCCACATCCTGGAGTAATTG
TTTTGTGCGACTCCGCATCGAAGCTAATAATGTTCACAGGAAACGCAAGT
ACAATATTGCTACAGGCTGCGATCAACGGGCAAAAAAAAGCTGATGTTTT
CTTATCTGTGATTTTCCTTCCGTTGTTGAGTAGCTCCGATTTATTTCCCT
CGGTCTGCATGGGGGTAACGCTGGATTGTGGGTGCCCTCCTACCGTAACT
CACCCTTTGATTGTCAAGTTTTTCCTTTTTCGTCAGCAGGACCAAACCAA
CGCGTTGTTCGTGCTTGGGTGGGTCGTTCGACTCTATGATGGGTGCGTCA
TCTGTCGTCTGTCTAGCTCTCGTGTTCGCTCTCTAGACGTGCGTCTCTCA
CTGGGGGTGATCTCCTTGCCTCTTTTCGAACCTCCCGCACTCCCTTCTGT
CGTCTCATTTACGTCCCGTTTCAATCACGATCTCTCATGTTGCCGCCGTC
CCCCCGCATTGATGCCAACTTTGTTTTGGGCAGGCTGTATTCCTCCTTGC
CGCAAGTGTATCGGTAGACAAGATCACAATTGCCGAAGCGCCATGATACA
GCTTGGTGCTCGACCTTGAAGCTTTTGGAGAAATTGATTTACCGAAGGGG
TGCATGCAGACCGCGTTGGTTCGACGTTTGCTGTGGCAACCTGAGAGCGA
CGGGAGCGCTGCTGTACGGCACTGCCGCTGGTGCTAGCCTTTTGACTTGG
GGCTACAACAGCAGTATCTGCATTCTCCGGAAGTTGTTGAGCATGGGAAT
GTAGCGAGTTCGTCGTTGCTGCGATAAAGAGGGGTGGCGCGCGCCACGGC
TAACGGATAGTACCACAGTATCTGCGGCACCACAACAGATTATCCCTCTG
GATTGGACCCTGAGGACCCATGGCGGGCTGGAAAGGTACAAGTTTGGTGC
ATACCTAAACCTGACGCCACATCGTTGTTTTTTGAAACACTCAAGGAAAA
ATTCCAGCTTCTTAAAGCTAGGTTTGCGAATATGGGAACGGGTACCCTGA
AAAAGAGGCGGAAAATTTATTCTACACGAGAGTATCCCGCCGAAGACAGA
CAGACCCTTGCAGTGCAGGGAAAGGGGAGTAACAAAGAGGTACACGAAGA
GATAAACGATTGCAGGCGCACCATTTATCTAAATGCCGTTTGTTTTGCTT
TGCTTTTTGTGCATTGCCGACATCGAGCGCCGTGTCGGTGCTCCCAAAAT
GAAGACATTGCAGTTTTGATTAGGGGATGACGGGTGTCATCGCGTCTCGC
TTCGTGCTTCGCAAATACCTTCCCAAAAGAGTTGTGTGTGGTGAATGACG
TGCGAGTTTTGGGGTGACGAGACAGATATGCCTCGCGTCACTGGTGCATC
GTGTAGCATACATGCTTCAACTAGTCTCGTGCTGATCGTGTCCTGTTGCG
CCGCCACGCCCTCACCTAGGAACGTTGGGCCTCGCACAATGACATTCTGC
TGTAGACCAACCTTGAAGTGATTTTATTTCTTCTCTTGGGCTGCTCTGTT
GAGGCAACAATAGGGTGTGCTGTGCGGTTTTTGGAAGCTGTCGAGACTGC
AATCCAACGCGTATCATTGGTATCTGCTGTGCGACGCAGGAGGTCGACTC
GACTTGTGCTCACGGTTGACTTGGTGGTGCAAGCACTTGTAGCTTTGCCA
A
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Coding sequence (CDS) from alignment at Scaffold_340:414071..417071-

>EsuBft154_28a-0001 ID=EsuBft154_28a-0001|Name=EsuBft154_28a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=477bp|location=Sequence derived from alignment at Scaffold_340:414071..417071- (Ectocarpus subulatus male Bft15b)
ATGAAGTACAGCATCGTTGCTTGGTTTGTCTGGTATACCGCTGCGGATGC
TTTGTTTGCCACCGCACCGATCGGCAGCAGCGCGGGCGCCTCACACCGAG
GGAGAATACATCGGCATTTATCGGCAGCAACGCTGCTAGCGTTGCCGAGG
CGCAGCGATGCCGGGCAGGGAATGGGTACCCGAAGGCTCTGCGCTGCCGA
CAGCATCCACAGGAGCTACCCGATGATGCGCGGCGTTGCTGACGACCATC
AAGAACTGGTACTGAGAGAGTTTGCCCTGCCTCTGCAAGCTAGCCCAGGG
TCGTACGAGAGACGGGTTAGGGCGGAGTGTTTGCGGGAGGGAGGGGAGAC
GGCTACAGTCGTTCGGTGGCACATTAGCCACGCGGACGAAGCGACAGGCC
GTGCTCATGTAGAGGCTGTATTCCTCCTTGCCGCAAGTGTATCGGTAGAC
AAGATCACAATTGCCGAAGCGCCATGA
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