EsuBft154_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft154_26a-0001
Unique NameEsuBft154_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_340contigScaffold_340:462816..465147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft154_26
Protein domainsSSF54277
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length152
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_002540.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft154_26aEsuBft154_26aEctocarpus subulatus male Bft15bgeneScaffold_340 462816..465147 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_26a-0001-exonagat-exon-109664Ectocarpus subulatus male Bft15bexonScaffold_340 462816..463195 +
EsuBft154_26a-0001-exonEsuBft154_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_340 464006..465147 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_26a-0001-exonagat-five_prime_utr-3122Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_340 462816..462853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_26a-0001-cdsEsuBft154_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_340 462854..463195 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_26a-0001-exonagat-three_prime_utr-4813Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_340 464981..465147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft154_26a-0001EsuBft154_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_340 462854..464980 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft154_26a-0001 ID=EsuBft154_26a-0001|Name=EsuBft154_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1522bp|location=Sequence derived from alignment at Scaffold_340:462816..465147+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTGCCCGTGCCCTGCCCCCACCTCACTCACAACATCCATGAACACCATC
AACCACAACAACAACAACAACCGCTACAACAACAACAAGACGATGACTAC
CTCTTCCATCAAGATCACCTTCCAGGGCGCTTCACGCGACGTGAACGTTC
GGGTTCCGGTTATGCTCGCCAGCCTTCAAGCTGCCATCGCCGCCGCCTTC
GATGTAGAGCTGCCTGCCCGCTCCTCCGCTGGCGAGGCCGCCAATGACAC
CGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACGACATCGTGTTCG
ACAAGGAATCCGAGCTACAGCTGGCCCTGCGCCTGTGCCCCGGTTCGCTC
GAGATCTCGGCTGCCGGCAAGGAAAACAAGGCTACTAGGATGCCGGACTC
CGAAGAGAAGCTGTACAAGATCGCCGCCCGCAACCTGCGCGAGTACAATG
GCGTGCCCTCGATGACCCCACCCAAGCTCGTCAAGACCCTGGCGTTCCTC
AAGCTGAACCCGCAACGCCTCGTGAAGCAGGGCCTTGCTCCCAAGGTGCT
TCTGGCTCGCATGAAGGCCGAAGCCGCCAACAACGCCAAGGTATCGAAGG
TTCCTCTTGGTGACGGCAAGAACAACGAGGATCTCGCCGAATCGGTCGCC
GCCGGCATGGAACTGATGAGCGTGGAGGACGGCAAGAAGGAGTGGAACGA
CGGCTTCGTGTCCGTCGAGCCCGCAGAGATCTCCTTCCCTGCCAATGACA
ACGAGGAGAAGAACGACGCTGCACCTGAGGCCAAGAAGAACCTCATCCAC
AAGGCCTTCATCGCCGGCGGCATCCAGCTCCGCCCCCGCGAGGTCCGACC
CCTGCTCGTCGCCCTTGACGTCCTCCCCTACCGGCTGGCCAAGCTCGGCC
TCGTCGGCGGCAAGGATCTCCGCGCCATGCTCCGAGCCGAGAAGAAGACC
GCCCACAAGCGCCACGGCCCGGGCCACGCCGGCCTCCAGCACCTCGGCCA
CGTTGAGCGCATGGCCCACAGTGGCCCCCGTGGCCCCACCGGCGGCTTCG
CCCGTGGTCCCGCAGGCCTCATCATGCGCGTCGGCAGTGTTAGACCCGGT
GCCGGTCCCAGTCCCGGTTCCGGTTCCGGTGCCAGTGGTCGTACCCCAGA
GGCGGGAGCCAACGTGGTTCCTCTCGGAAGGGGCAAGATGAGGGCCGTGT
TCTGCGGCAAACCCCGCGTAGGGATGATGATGCCCCGTCGCTGCCACCCC
CACGCCGGCATGCCTCCCCCTCCCCGACCTCACATGGAGCACGCTCGTGC
GCCCGGCGGCGGCGGCGGCGGTGTTGGCCAGCAGCAGCACGGGCGTCACC
GCTAGGGGCGAAGATCACCGTCAATCCGAAGGAGGAGAAGCCTCGCTGTC
TGCTACCATTCTGTTCCTTGTTCCGCGTTTCGTGGTGCAAGAAGATCGGC
ATGAGAGTAGCAGTTGAATTGGTATATCGTTGTCTATGGGTTGGTACCAT
TTGCAATTGGGCAGAAGCCTCC
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protein sequence of EsuBft154_26a-0001

>EsuBft154_26 ID=EsuBft154_26|Name=EsuBft154_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=438bp
MNTINHNNNNNRYNNNKTMTTSSIKITFQGASRDVNVRVPVMLASLQAAI
AAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLC
PGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKT
LAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLA
ESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAKK
NLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRA
EKKTAHKRHGPGHAGLQHLGHVERMAHSGPRGPTGGFARGPAGLIMRVGS
VRPGAGPSPGSGSGASGRTPEAGANVVPLGRGKMRAVFCGKPRVGMMMPR
RCHPHAGMPPPPRPHMEHARAPGGGGGGVGQQQHGRHR
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mRNA from alignment at Scaffold_340:462816..465147+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft154_26a-0001 ID=EsuBft154_26a-0001|Name=EsuBft154_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2332bp|location=Sequence derived from alignment at Scaffold_340:462816..465147+ (Ectocarpus subulatus male Bft15b)
CCTGCCCGTGCCCTGCCCCCACCTCACTCACAACATCCATGAACACCATC
AACCACAACAACAACAACAACCGCTACAACAACAACAAGACGATGACTAC
CTCTTCCATCAAGATCACCTTCCAGGGCGCTTCACGCGACGTGAACGTTC
GGGTTCCGGTTATGCTCGCCAGCCTTCAAGCTGCCATCGCCGCCGCCTTC
GATGTAGAGCTGCCTGCCCGCTCCTCCGCTGGCGAGGCCGCCAATGACAC
CGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACGACATCGTGTTCG
ACAAGGAATCCGAGCTACAGCTGGCCCTGCGCCTGTGCCCCGGTTCGCTC
GAGATCTCGGCTGCCGGCAAGGAAAACAAGGTGAGAGCGTGAACGGGAGA
GAAAAATAACTCAATGCTGTGCACCGACACGCGTTTTCACACACGAGGGC
ACACGTCGTAAGGGCACAGGCTTTGACGACGTTGCACATGGAACAAATAG
TTCTTCGACACTGCCCTCCCGTGCACTGCCCCCATTCGTTGTTGCTCTTC
CAGTTTATCCAAATGTCGAAGTTGATGCGGGTCGCGGAAAATTCACGTTG
CCTCTCCGCTCTCCTGTAAAGTTGTACTACGGTGTAATGTAGTCCGTCAA
GTAGCAAGGTGCTGCTGTTGGTGGGCCAAATGGAGTTACGAAATATTGTC
AAGCCGCCCTCGCTTTCCATAAGCAGCTTGCCCCATATATTTACGCTTTA
TTGAGTAGGTTGTGGGCCATCCACTCACAGCAACAATCGGAAGAACTCGA
TGAATCGATTAACTGTCGCCTCATTAACTTCATGTGCTGCCGTAGTTGAA
GTATTCTCCGAGCCACGTGGTGATGATGACATGTACATAGGAATAAGACT
ACATAGCGAGACGTATCGCAACGCCCTATTTTGATATTTGACGGGTTACA
ACTTGCTCCACTTGGCAGCCTGGCGATCACCATTGGTTTCTCGTATGCAA
AGAATATTCTGTCTCCTCTTGGGTCGTACCTCTTGCGAACTACCATTATT
GATTTCGATTGGTCGGCCGTTATTTCTCGATGTATCACCTTCTACCTCCG
ACGTCCAAAAGCTGCTGAATCCCAACAAGCTACTTTCTGGCATCTGACCA
CCGTCGTTCCATCCTCTCCTCCATTCCTTCTTCCGTTCAGGCTACTAGGA
TGCCGGACTCCGAAGAGAAGCTGTACAAGATCGCCGCCCGCAACCTGCGC
GAGTACAATGGCGTGCCCTCGATGACCCCACCCAAGCTCGTCAAGACCCT
GGCGTTCCTCAAGCTGAACCCGCAACGCCTCGTGAAGCAGGGCCTTGCTC
CCAAGGTGCTTCTGGCTCGCATGAAGGCCGAAGCCGCCAACAACGCCAAG
GTATCGAAGGTTCCTCTTGGTGACGGCAAGAACAACGAGGATCTCGCCGA
ATCGGTCGCCGCCGGCATGGAACTGATGAGCGTGGAGGACGGCAAGAAGG
AGTGGAACGACGGCTTCGTGTCCGTCGAGCCCGCAGAGATCTCCTTCCCT
GCCAATGACAACGAGGAGAAGAACGACGCTGCACCTGAGGCCAAGAAGAA
CCTCATCCACAAGGCCTTCATCGCCGGCGGCATCCAGCTCCGCCCCCGCG
AGGTCCGACCCCTGCTCGTCGCCCTTGACGTCCTCCCCTACCGGCTGGCC
AAGCTCGGCCTCGTCGGCGGCAAGGATCTCCGCGCCATGCTCCGAGCCGA
GAAGAAGACCGCCCACAAGCGCCACGGCCCGGGCCACGCCGGCCTCCAGC
ACCTCGGCCACGTTGAGCGCATGGCCCACAGTGGCCCCCGTGGCCCCACC
GGCGGCTTCGCCCGTGGTCCCGCAGGCCTCATCATGCGCGTCGGCAGTGT
TAGACCCGGTGCCGGTCCCAGTCCCGGTTCCGGTTCCGGTGCCAGTGGTC
GTACCCCAGAGGCGGGAGCCAACGTGGTTCCTCTCGGAAGGGGCAAGATG
AGGGCCGTGTTCTGCGGCAAACCCCGCGTAGGGATGATGATGCCCCGTCG
CTGCCACCCCCACGCCGGCATGCCTCCCCCTCCCCGACCTCACATGGAGC
ACGCTCGTGCGCCCGGCGGCGGCGGCGGCGGTGTTGGCCAGCAGCAGCAC
GGGCGTCACCGCTAGGGGCGAAGATCACCGTCAATCCGAAGGAGGAGAAG
CCTCGCTGTCTGCTACCATTCTGTTCCTTGTTCCGCGTTTCGTGGTGCAA
GAAGATCGGCATGAGAGTAGCAGTTGAATTGGTATATCGTTGTCTATGGG
TTGGTACCATTTGCAATTGGGCAGAAGCCTCC
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Coding sequence (CDS) from alignment at Scaffold_340:462816..465147+

>EsuBft154_26a-0001 ID=EsuBft154_26a-0001|Name=EsuBft154_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1317bp|location=Sequence derived from alignment at Scaffold_340:462816..465147+ (Ectocarpus subulatus male Bft15b)
ATGAACACCATCAACCACAACAACAACAACAACCGCTACAACAACAACAA
GACGATGACTACCTCTTCCATCAAGATCACCTTCCAGGGCGCTTCACGCG
ACGTGAACGTTCGGGTTCCGGTTATGCTCGCCAGCCTTCAAGCTGCCATC
GCCGCCGCCTTCGATGTAGAGCTGCCTGCCCGCTCCTCCGCTGGCGAGGC
CGCCAATGACACCGACCTGTCCTTCACGTACAAGGATCCTGATGGGGACG
ACATCGTGTTCGACAAGGAATCCGAGCTACAGCTGGCCCTGCGCCTGTGC
CCCGGTTCGCTCGAGATCTCGGCTGCCGGCAAGGAAAACAAGGCTACTAG
GATGCCGGACTCCGAAGAGAAGCTGTACAAGATCGCCGCCCGCAACCTGC
GCGAGTACAATGGCGTGCCCTCGATGACCCCACCCAAGCTCGTCAAGACC
CTGGCGTTCCTCAAGCTGAACCCGCAACGCCTCGTGAAGCAGGGCCTTGC
TCCCAAGGTGCTTCTGGCTCGCATGAAGGCCGAAGCCGCCAACAACGCCA
AGGTATCGAAGGTTCCTCTTGGTGACGGCAAGAACAACGAGGATCTCGCC
GAATCGGTCGCCGCCGGCATGGAACTGATGAGCGTGGAGGACGGCAAGAA
GGAGTGGAACGACGGCTTCGTGTCCGTCGAGCCCGCAGAGATCTCCTTCC
CTGCCAATGACAACGAGGAGAAGAACGACGCTGCACCTGAGGCCAAGAAG
AACCTCATCCACAAGGCCTTCATCGCCGGCGGCATCCAGCTCCGCCCCCG
CGAGGTCCGACCCCTGCTCGTCGCCCTTGACGTCCTCCCCTACCGGCTGG
CCAAGCTCGGCCTCGTCGGCGGCAAGGATCTCCGCGCCATGCTCCGAGCC
GAGAAGAAGACCGCCCACAAGCGCCACGGCCCGGGCCACGCCGGCCTCCA
GCACCTCGGCCACGTTGAGCGCATGGCCCACAGTGGCCCCCGTGGCCCCA
CCGGCGGCTTCGCCCGTGGTCCCGCAGGCCTCATCATGCGCGTCGGCAGT
GTTAGACCCGGTGCCGGTCCCAGTCCCGGTTCCGGTTCCGGTGCCAGTGG
TCGTACCCCAGAGGCGGGAGCCAACGTGGTTCCTCTCGGAAGGGGCAAGA
TGAGGGCCGTGTTCTGCGGCAAACCCCGCGTAGGGATGATGATGCCCCGT
CGCTGCCACCCCCACGCCGGCATGCCTCCCCCTCCCCGACCTCACATGGA
GCACGCTCGTGCGCCCGGCGGCGGCGGCGGCGGTGTTGGCCAGCAGCAGC
ACGGGCGTCACCGCTAG
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